Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6955 and GFF6956 are separated by 260 nucleotides GFF6956 and GFF6957 are separated by 2 nucleotides GFF6957 and GFF6958 overlap by 4 nucleotides GFF6958 and GFF6959 overlap by 4 nucleotides GFF6959 and GFF6960 are separated by 34 nucleotides
GFF6955 - no description, at 30,730 to 30,864
GFF6955
GFF6956 - Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein, at 31,125 to 31,820
GFF6956
GFF6957 - Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), at 31,823 to 33,229
GFF6957
GFF6958 - no description, at 33,226 to 33,492
GFF6958
GFF6959 - Putative analog of CcoH, COG3198, at 33,489 to 33,770
GFF6959
GFF6960 - Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation, at 33,805 to 35,232
GFF6960
Position (kb) 31
32
33
34 Strain fitness (log2 ratio) -2
-1
0
1
2 at 31.637 kb on - strand, within GFF6956 at 31.863 kb on + strand at 32.184 kb on + strand, within GFF6957 at 32.185 kb on - strand, within GFF6957 at 32.341 kb on - strand, within GFF6957 at 32.346 kb on + strand, within GFF6957 at 32.347 kb on - strand, within GFF6957 at 32.466 kb on + strand, within GFF6957 at 32.466 kb on + strand, within GFF6957 at 32.467 kb on - strand, within GFF6957 at 32.473 kb on - strand, within GFF6957 at 32.556 kb on + strand, within GFF6957 at 32.557 kb on - strand, within GFF6957 at 32.931 kb on + strand, within GFF6957 at 32.931 kb on + strand, within GFF6957 at 32.931 kb on + strand, within GFF6957 at 32.991 kb on + strand, within GFF6957 at 32.991 kb on + strand, within GFF6957 at 32.991 kb on + strand, within GFF6957 at 32.991 kb on + strand, within GFF6957 at 32.994 kb on + strand, within GFF6957 at 33.027 kb on + strand, within GFF6957 at 33.027 kb on + strand, within GFF6957 at 33.028 kb on - strand, within GFF6957 at 33.028 kb on - strand, within GFF6957 at 33.028 kb on - strand, within GFF6957 at 33.132 kb on + strand at 33.132 kb on + strand at 33.141 kb on + strand at 33.347 kb on + strand, within GFF6958 at 33.347 kb on + strand, within GFF6958 at 33.347 kb on + strand, within GFF6958 at 33.347 kb on + strand, within GFF6958 at 33.348 kb on - strand, within GFF6958 at 33.348 kb on - strand, within GFF6958 at 33.348 kb on - strand, within GFF6958 at 33.619 kb on + strand, within GFF6959 at 33.620 kb on - strand, within GFF6959 at 34.017 kb on - strand, within GFF6960 at 34.017 kb on - strand, within GFF6960 at 34.059 kb on - strand, within GFF6960
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 31,637 - GFF6956 0.74 -0.6 31,863 + +0.3 32,184 + GFF6957 0.26 +0.1 32,185 - GFF6957 0.26 +0.2 32,341 - GFF6957 0.37 +2.2 32,346 + GFF6957 0.37 +1.0 32,347 - GFF6957 0.37 -1.2 32,466 + GFF6957 0.46 -2.6 32,466 + GFF6957 0.46 -1.1 32,467 - GFF6957 0.46 -0.5 32,473 - GFF6957 0.46 +0.8 32,556 + GFF6957 0.52 -2.4 32,557 - GFF6957 0.52 +0.3 32,931 + GFF6957 0.79 -0.7 32,931 + GFF6957 0.79 +1.3 32,931 + GFF6957 0.79 +0.0 32,991 + GFF6957 0.83 -0.1 32,991 + GFF6957 0.83 +0.6 32,991 + GFF6957 0.83 +0.9 32,991 + GFF6957 0.83 +0.3 32,994 + GFF6957 0.83 -1.0 33,027 + GFF6957 0.86 -1.2 33,027 + GFF6957 0.86 +0.6 33,028 - GFF6957 0.86 -0.7 33,028 - GFF6957 0.86 -0.3 33,028 - GFF6957 0.86 +0.4 33,132 + -0.2 33,132 + -0.6 33,141 + -0.0 33,347 + GFF6958 0.45 +0.4 33,347 + GFF6958 0.45 -0.2 33,347 + GFF6958 0.45 +0.2 33,347 + GFF6958 0.45 +0.9 33,348 - GFF6958 0.46 -0.0 33,348 - GFF6958 0.46 +0.2 33,348 - GFF6958 0.46 +0.4 33,619 + GFF6959 0.46 -0.3 33,620 - GFF6959 0.46 +1.6 34,017 - GFF6960 0.15 +0.1 34,017 - GFF6960 0.15 +0.0 34,059 - GFF6960 0.18 -0.4
Or see this region's nucleotide sequence