Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6938 and GFF6939 overlap by 4 nucleotides GFF6939 and GFF6940 are separated by 44 nucleotides GFF6940 and GFF6941 are separated by 318 nucleotides
GFF6938 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 12,842 to 14,341
GFF6938
GFF6939 - ABC-type antimicrobial peptide transport system, permease component, at 14,338 to 15,480
GFF6939
GFF6940 - no description, at 15,525 to 16,061
GFF6940
GFF6941 - Two-component transcriptional response regulator, LuxR family, at 16,380 to 17,249
GFF6941
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1 at 13.451 kb on + strand, within GFF6938 at 13.451 kb on + strand, within GFF6938 at 13.452 kb on - strand, within GFF6938 at 13.547 kb on + strand, within GFF6938 at 13.547 kb on + strand, within GFF6938 at 13.911 kb on - strand, within GFF6938 at 14.175 kb on - strand, within GFF6938 at 14.345 kb on - strand at 14.486 kb on - strand, within GFF6939 at 14.572 kb on + strand, within GFF6939 at 14.573 kb on - strand, within GFF6939 at 14.611 kb on + strand, within GFF6939 at 14.611 kb on + strand, within GFF6939 at 14.612 kb on - strand, within GFF6939 at 14.612 kb on - strand, within GFF6939 at 14.612 kb on - strand, within GFF6939 at 14.665 kb on + strand, within GFF6939 at 14.665 kb on + strand, within GFF6939 at 14.666 kb on - strand, within GFF6939 at 14.698 kb on - strand, within GFF6939 at 14.698 kb on - strand, within GFF6939 at 14.914 kb on + strand, within GFF6939 at 14.932 kb on + strand, within GFF6939 at 14.932 kb on + strand, within GFF6939 at 14.962 kb on + strand, within GFF6939 at 15.076 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.080 kb on - strand, within GFF6939 at 15.080 kb on - strand, within GFF6939 at 15.080 kb on - strand, within GFF6939 at 15.085 kb on + strand, within GFF6939 at 15.085 kb on + strand, within GFF6939 at 15.086 kb on - strand, within GFF6939 at 15.086 kb on - strand, within GFF6939 at 15.169 kb on + strand, within GFF6939 at 15.170 kb on - strand, within GFF6939 at 15.170 kb on - strand, within GFF6939 at 15.170 kb on - strand, within GFF6939 at 15.349 kb on + strand, within GFF6939 at 15.349 kb on + strand, within GFF6939 at 15.349 kb on + strand, within GFF6939 at 15.350 kb on - strand, within GFF6939 at 15.425 kb on - strand at 15.425 kb on - strand at 15.706 kb on + strand, within GFF6940 at 15.706 kb on + strand, within GFF6940 at 15.706 kb on + strand, within GFF6940 at 15.857 kb on - strand, within GFF6940 at 15.857 kb on - strand, within GFF6940 at 15.964 kb on + strand, within GFF6940 at 15.964 kb on + strand, within GFF6940 at 15.964 kb on + strand, within GFF6940 at 15.965 kb on - strand, within GFF6940 at 15.965 kb on - strand, within GFF6940 at 15.965 kb on - strand, within GFF6940 at 16.285 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 13,451 + GFF6938 0.41 -0.2 13,451 + GFF6938 0.41 -0.1 13,452 - GFF6938 0.41 -0.6 13,547 + GFF6938 0.47 -2.0 13,547 + GFF6938 0.47 -0.1 13,911 - GFF6938 0.71 +1.6 14,175 - GFF6938 0.89 -0.4 14,345 - -0.2 14,486 - GFF6939 0.13 -0.2 14,572 + GFF6939 0.20 +0.9 14,573 - GFF6939 0.21 -0.2 14,611 + GFF6939 0.24 +1.6 14,611 + GFF6939 0.24 -0.0 14,612 - GFF6939 0.24 -1.2 14,612 - GFF6939 0.24 -0.0 14,612 - GFF6939 0.24 +1.6 14,665 + GFF6939 0.29 +1.0 14,665 + GFF6939 0.29 +0.6 14,666 - GFF6939 0.29 -2.0 14,698 - GFF6939 0.31 -0.6 14,698 - GFF6939 0.31 +0.1 14,914 + GFF6939 0.50 +0.2 14,932 + GFF6939 0.52 +0.3 14,932 + GFF6939 0.52 -0.4 14,962 + GFF6939 0.55 -0.2 15,076 + GFF6939 0.65 -0.0 15,079 + GFF6939 0.65 +1.3 15,079 + GFF6939 0.65 +1.6 15,079 + GFF6939 0.65 -0.2 15,079 + GFF6939 0.65 +0.6 15,079 + GFF6939 0.65 -0.3 15,080 - GFF6939 0.65 -1.0 15,080 - GFF6939 0.65 -0.5 15,080 - GFF6939 0.65 -0.0 15,085 + GFF6939 0.65 +0.3 15,085 + GFF6939 0.65 +0.7 15,086 - GFF6939 0.65 +0.1 15,086 - GFF6939 0.65 -0.9 15,169 + GFF6939 0.73 +0.4 15,170 - GFF6939 0.73 +0.3 15,170 - GFF6939 0.73 -1.0 15,170 - GFF6939 0.73 -0.6 15,349 + GFF6939 0.88 -1.0 15,349 + GFF6939 0.88 -0.9 15,349 + GFF6939 0.88 +0.7 15,350 - GFF6939 0.89 -1.3 15,425 - +1.0 15,425 - -0.6 15,706 + GFF6940 0.34 -0.4 15,706 + GFF6940 0.34 -1.2 15,706 + GFF6940 0.34 -1.1 15,857 - GFF6940 0.62 -0.1 15,857 - GFF6940 0.62 -0.3 15,964 + GFF6940 0.82 -0.1 15,964 + GFF6940 0.82 +0.0 15,964 + GFF6940 0.82 +0.0 15,965 - GFF6940 0.82 -1.6 15,965 - GFF6940 0.82 +0.1 15,965 - GFF6940 0.82 +0.5 16,285 + -0.1
Or see this region's nucleotide sequence