Strain Fitness in Variovorax sp. SCN45 around GFF6911

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6910 and GFF6911 are separated by 148 nucleotidesGFF6911 and GFF6912 are separated by 16 nucleotides GFF6910 - Xanthine permease, at 45,049 to 46,389 GFF6910 GFF6911 - Transcriptional regulator, LacI family, at 46,538 to 47,578 GFF6911 GFF6912 - L-sorbosone dehydrogenase, at 47,595 to 48,968 GFF6912 Position (kb) 46 47 48Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 45.935 kb on + strand, within GFF6910at 45.935 kb on + strand, within GFF6910at 45.935 kb on + strand, within GFF6910at 45.935 kb on + strand, within GFF6910at 45.935 kb on + strand, within GFF6910at 45.935 kb on + strand, within GFF6910at 45.936 kb on - strand, within GFF6910at 45.936 kb on - strand, within GFF6910at 45.999 kb on - strand, within GFF6910at 45.999 kb on - strand, within GFF6910at 46.037 kb on + strand, within GFF6910at 46.037 kb on + strand, within GFF6910at 46.037 kb on + strand, within GFF6910at 46.037 kb on + strand, within GFF6910at 46.037 kb on + strand, within GFF6910at 46.038 kb on - strand, within GFF6910at 46.351 kb on + strandat 46.351 kb on + strandat 46.351 kb on + strandat 46.351 kb on + strandat 46.351 kb on + strandat 46.352 kb on - strandat 46.352 kb on - strandat 46.352 kb on - strandat 46.352 kb on - strandat 46.352 kb on - strandat 46.352 kb on - strandat 46.353 kb on - strandat 46.468 kb on + strandat 46.468 kb on + strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.496 kb on + strandat 46.691 kb on + strand, within GFF6911at 46.961 kb on + strand, within GFF6911at 46.961 kb on + strand, within GFF6911at 46.961 kb on + strand, within GFF6911at 46.961 kb on + strand, within GFF6911at 46.962 kb on - strand, within GFF6911at 46.962 kb on - strand, within GFF6911at 46.962 kb on - strand, within GFF6911at 46.962 kb on - strand, within GFF6911at 47.042 kb on + strand, within GFF6911at 47.042 kb on + strand, within GFF6911at 47.042 kb on + strand, within GFF6911at 47.042 kb on + strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.151 kb on - strand, within GFF6911at 47.171 kb on + strand, within GFF6911at 47.171 kb on + strand, within GFF6911at 47.171 kb on + strand, within GFF6911at 47.171 kb on + strand, within GFF6911at 47.171 kb on + strand, within GFF6911at 47.172 kb on - strand, within GFF6911at 47.394 kb on - strand, within GFF6911at 47.597 kb on - strandat 47.783 kb on - strand, within GFF6912at 47.785 kb on + strand, within GFF6912at 47.785 kb on + strand, within GFF6912at 47.785 kb on + strand, within GFF6912at 47.785 kb on + strand, within GFF6912at 47.786 kb on - strand, within GFF6912at 47.914 kb on + strand, within GFF6912at 47.915 kb on - strand, within GFF6912at 47.986 kb on + strand, within GFF6912at 47.987 kb on - strand, within GFF6912at 47.989 kb on + strand, within GFF6912at 47.989 kb on + strand, within GFF6912at 47.989 kb on + strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 48.007 kb on + strand, within GFF6912at 48.008 kb on - strand, within GFF6912at 48.037 kb on + strand, within GFF6912at 48.037 kb on + strand, within GFF6912at 48.037 kb on + strand, within GFF6912at 48.037 kb on + strand, within GFF6912at 48.037 kb on + strand, within GFF6912at 48.037 kb on + strand, within GFF6912at 48.038 kb on - strand, within GFF6912at 48.038 kb on - strand, within GFF6912at 48.038 kb on - strand, within GFF6912at 48.188 kb on + strand, within GFF6912at 48.188 kb on + strand, within GFF6912at 48.188 kb on + strand, within GFF6912at 48.189 kb on - strand, within GFF6912at 48.189 kb on - strand, within GFF6912at 48.256 kb on + strand, within GFF6912at 48.256 kb on + strand, within GFF6912at 48.256 kb on + strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.373 kb on + strand, within GFF6912at 48.373 kb on + strand, within GFF6912at 48.373 kb on + strand, within GFF6912at 48.373 kb on + strand, within GFF6912at 48.374 kb on - strand, within GFF6912at 48.374 kb on - strand, within GFF6912at 48.374 kb on - strand, within GFF6912at 48.374 kb on - strand, within GFF6912at 48.374 kb on - strand, within GFF6912at 48.439 kb on + strand, within GFF6912

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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45,935 + GFF6910 0.66 -0.0
45,935 + GFF6910 0.66 -0.4
45,935 + GFF6910 0.66 -2.0
45,935 + GFF6910 0.66 -0.1
45,935 + GFF6910 0.66 +0.9
45,935 + GFF6910 0.66 +0.2
45,936 - GFF6910 0.66 -0.4
45,936 - GFF6910 0.66 +0.4
45,999 - GFF6910 0.71 -0.7
45,999 - GFF6910 0.71 -0.1
46,037 + GFF6910 0.74 -0.6
46,037 + GFF6910 0.74 -0.3
46,037 + GFF6910 0.74 +0.8
46,037 + GFF6910 0.74 +0.2
46,037 + GFF6910 0.74 -0.1
46,038 - GFF6910 0.74 -1.1
46,351 + -1.2
46,351 + +0.1
46,351 + -0.3
46,351 + -0.3
46,351 + -1.0
46,352 - -0.4
46,352 - -0.8
46,352 - +0.3
46,352 - -0.2
46,352 - -0.3
46,352 - +0.4
46,353 - -0.0
46,468 + -0.5
46,468 + -0.7
46,469 - -0.0
46,469 - -0.1
46,469 - -0.7
46,469 - -0.6
46,469 - +1.0
46,469 - -0.4
46,469 - +2.6
46,469 - -0.6
46,469 - -0.4
46,469 - -0.8
46,469 - -0.6
46,469 - -0.2
46,469 - +0.3
46,496 + -0.8
46,691 + GFF6911 0.15 -0.0
46,961 + GFF6911 0.41 -0.3
46,961 + GFF6911 0.41 +1.1
46,961 + GFF6911 0.41 -0.9
46,961 + GFF6911 0.41 -1.3
46,962 - GFF6911 0.41 +0.1
46,962 - GFF6911 0.41 -0.0
46,962 - GFF6911 0.41 -0.6
46,962 - GFF6911 0.41 -0.3
47,042 + GFF6911 0.48 +0.5
47,042 + GFF6911 0.48 -0.6
47,042 + GFF6911 0.48 +1.0
47,042 + GFF6911 0.48 -0.9
47,043 - GFF6911 0.49 -0.6
47,043 - GFF6911 0.49 -1.8
47,043 - GFF6911 0.49 -1.8
47,043 - GFF6911 0.49 -1.0
47,043 - GFF6911 0.49 -0.7
47,043 - GFF6911 0.49 -0.4
47,043 - GFF6911 0.49 +0.5
47,150 + GFF6911 0.59 -0.1
47,150 + GFF6911 0.59 -0.7
47,150 + GFF6911 0.59 -0.5
47,150 + GFF6911 0.59 +0.9
47,150 + GFF6911 0.59 -1.0
47,150 + GFF6911 0.59 -0.6
47,150 + GFF6911 0.59 +0.8
47,150 + GFF6911 0.59 -0.0
47,150 + GFF6911 0.59 -0.7
47,150 + GFF6911 0.59 +1.2
47,151 - GFF6911 0.59 +0.1
47,171 + GFF6911 0.61 -0.2
47,171 + GFF6911 0.61 -0.2
47,171 + GFF6911 0.61 +0.1
47,171 + GFF6911 0.61 -0.8
47,171 + GFF6911 0.61 +0.1
47,172 - GFF6911 0.61 +0.1
47,394 - GFF6911 0.82 -0.1
47,597 - -0.3
47,783 - GFF6912 0.14 -0.8
47,785 + GFF6912 0.14 -1.0
47,785 + GFF6912 0.14 -0.8
47,785 + GFF6912 0.14 +1.0
47,785 + GFF6912 0.14 -0.4
47,786 - GFF6912 0.14 +0.3
47,914 + GFF6912 0.23 +0.5
47,915 - GFF6912 0.23 -1.0
47,986 + GFF6912 0.28 -0.0
47,987 - GFF6912 0.29 +1.0
47,989 + GFF6912 0.29 -0.2
47,989 + GFF6912 0.29 +0.7
47,989 + GFF6912 0.29 -0.6
47,990 - GFF6912 0.29 +0.1
47,990 - GFF6912 0.29 -0.9
47,990 - GFF6912 0.29 -1.0
47,990 - GFF6912 0.29 +0.4
47,990 - GFF6912 0.29 +1.1
47,990 - GFF6912 0.29 -1.0
47,990 - GFF6912 0.29 -0.8
47,990 - GFF6912 0.29 -0.3
47,990 - GFF6912 0.29 -0.0
47,990 - GFF6912 0.29 -0.8
47,990 - GFF6912 0.29 -0.2
47,990 - GFF6912 0.29 +1.0
48,007 + GFF6912 0.30 -0.6
48,008 - GFF6912 0.30 +0.1
48,037 + GFF6912 0.32 -0.8
48,037 + GFF6912 0.32 +0.1
48,037 + GFF6912 0.32 -0.2
48,037 + GFF6912 0.32 +0.2
48,037 + GFF6912 0.32 +0.6
48,037 + GFF6912 0.32 -0.3
48,038 - GFF6912 0.32 -0.3
48,038 - GFF6912 0.32 -0.2
48,038 - GFF6912 0.32 -0.3
48,188 + GFF6912 0.43 -0.7
48,188 + GFF6912 0.43 -0.3
48,188 + GFF6912 0.43 +1.5
48,189 - GFF6912 0.43 -1.5
48,189 - GFF6912 0.43 +0.5
48,256 + GFF6912 0.48 -0.6
48,256 + GFF6912 0.48 -0.2
48,256 + GFF6912 0.48 -0.4
48,257 - GFF6912 0.48 +0.1
48,257 - GFF6912 0.48 +0.7
48,257 - GFF6912 0.48 -1.1
48,257 - GFF6912 0.48 -2.8
48,257 - GFF6912 0.48 +0.5
48,257 - GFF6912 0.48 +0.3
48,257 - GFF6912 0.48 +0.8
48,373 + GFF6912 0.57 -0.7
48,373 + GFF6912 0.57 -0.2
48,373 + GFF6912 0.57 +1.1
48,373 + GFF6912 0.57 +0.1
48,374 - GFF6912 0.57 -0.3
48,374 - GFF6912 0.57 -0.8
48,374 - GFF6912 0.57 +0.7
48,374 - GFF6912 0.57 -0.4
48,374 - GFF6912 0.57 +0.7
48,439 + GFF6912 0.61 -1.6

Or see this region's nucleotide sequence