Strain Fitness in Variovorax sp. SCN45 around GFF691

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF689 and GFF690 are separated by 56 nucleotidesGFF690 and GFF691 are separated by 82 nucleotidesGFF691 and GFF692 are separated by 155 nucleotides GFF689 - protein of unknown function DUF521, at 743,434 to 744,729 GFF689 GFF690 - Transcriptional regulator, IclR family, at 744,786 to 745,628 GFF690 GFF691 - hypothetical protein, at 745,711 to 747,162 GFF691 GFF692 - BUG/TctC family periplasmic protein, at 747,318 to 748,313 GFF692 Position (kb) 745 746 747 748Strain fitness (log2 ratio) -2 -1 0 1 2 3at 744.787 kb on + strandat 744.788 kb on - strandat 744.788 kb on - strandat 744.807 kb on + strandat 744.807 kb on + strandat 744.808 kb on - strandat 745.003 kb on + strand, within GFF690at 745.132 kb on + strand, within GFF690at 745.132 kb on + strand, within GFF690at 745.133 kb on - strand, within GFF690at 745.133 kb on - strand, within GFF690at 745.133 kb on - strand, within GFF690at 745.133 kb on - strand, within GFF690at 745.237 kb on + strand, within GFF690at 745.262 kb on - strand, within GFF690at 745.262 kb on - strand, within GFF690at 745.667 kb on + strandat 745.667 kb on + strandat 745.667 kb on + strandat 745.667 kb on + strandat 745.667 kb on + strandat 745.668 kb on - strandat 745.668 kb on - strandat 745.668 kb on - strandat 745.938 kb on + strand, within GFF691at 745.939 kb on - strand, within GFF691at 745.939 kb on - strand, within GFF691at 745.966 kb on + strand, within GFF691at 745.991 kb on + strand, within GFF691at 746.153 kb on + strand, within GFF691at 746.153 kb on + strand, within GFF691at 746.153 kb on + strand, within GFF691at 746.153 kb on + strand, within GFF691at 746.154 kb on - strand, within GFF691at 746.154 kb on - strand, within GFF691at 746.154 kb on - strand, within GFF691at 746.189 kb on + strand, within GFF691at 746.189 kb on + strand, within GFF691at 746.189 kb on + strand, within GFF691at 746.189 kb on + strand, within GFF691at 746.190 kb on - strand, within GFF691at 746.190 kb on - strand, within GFF691at 746.190 kb on - strand, within GFF691at 746.190 kb on - strand, within GFF691at 746.190 kb on - strand, within GFF691at 746.190 kb on - strand, within GFF691at 746.486 kb on + strand, within GFF691at 746.486 kb on + strand, within GFF691at 746.487 kb on - strand, within GFF691at 746.636 kb on + strand, within GFF691at 746.637 kb on - strand, within GFF691at 746.637 kb on - strand, within GFF691at 746.637 kb on - strand, within GFF691at 746.637 kb on - strand, within GFF691at 746.637 kb on - strand, within GFF691at 746.732 kb on + strand, within GFF691at 746.733 kb on - strand, within GFF691at 746.733 kb on - strand, within GFF691at 746.939 kb on + strand, within GFF691at 746.940 kb on - strand, within GFF691at 746.940 kb on - strand, within GFF691at 746.940 kb on - strand, within GFF691at 746.940 kb on - strand, within GFF691at 746.940 kb on - strand, within GFF691at 746.940 kb on - strand, within GFF691at 746.940 kb on - strand, within GFF691at 746.940 kb on - strand, within GFF691at 747.041 kb on + strandat 747.041 kb on + strandat 747.041 kb on + strandat 747.288 kb on + strandat 747.433 kb on + strand, within GFF692at 747.600 kb on + strand, within GFF692at 747.601 kb on - strand, within GFF692at 747.601 kb on - strand, within GFF692at 747.601 kb on - strand, within GFF692at 747.612 kb on + strand, within GFF692at 747.613 kb on - strand, within GFF692at 747.613 kb on - strand, within GFF692at 747.613 kb on - strand, within GFF692at 747.667 kb on - strand, within GFF692at 747.667 kb on - strand, within GFF692at 747.774 kb on + strand, within GFF692at 747.775 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.840 kb on + strand, within GFF692at 747.840 kb on + strand, within GFF692at 747.840 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.892 kb on - strand, within GFF692at 747.892 kb on - strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 748.069 kb on - strand, within GFF692at 748.069 kb on - strand, within GFF692at 748.104 kb on + strand, within GFF692at 748.104 kb on + strand, within GFF692at 748.105 kb on - strand, within GFF692at 748.105 kb on - strand, within GFF692

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
744,787 + -0.8
744,788 - -1.1
744,788 - -0.7
744,807 + +0.3
744,807 + -0.5
744,808 - +0.4
745,003 + GFF690 0.26 -0.3
745,132 + GFF690 0.41 +0.8
745,132 + GFF690 0.41 -0.2
745,133 - GFF690 0.41 -1.0
745,133 - GFF690 0.41 -0.2
745,133 - GFF690 0.41 -0.4
745,133 - GFF690 0.41 -1.0
745,237 + GFF690 0.53 +0.1
745,262 - GFF690 0.56 +0.7
745,262 - GFF690 0.56 -0.4
745,667 + -0.6
745,667 + -0.1
745,667 + -0.0
745,667 + +3.1
745,667 + +0.1
745,668 - -0.1
745,668 - -0.3
745,668 - +1.4
745,938 + GFF691 0.16 -0.5
745,939 - GFF691 0.16 +0.3
745,939 - GFF691 0.16 -0.3
745,966 + GFF691 0.18 -0.8
745,991 + GFF691 0.19 +0.1
746,153 + GFF691 0.30 -1.2
746,153 + GFF691 0.30 +0.1
746,153 + GFF691 0.30 +0.4
746,153 + GFF691 0.30 +0.1
746,154 - GFF691 0.31 -0.5
746,154 - GFF691 0.31 -0.6
746,154 - GFF691 0.31 -0.2
746,189 + GFF691 0.33 -0.3
746,189 + GFF691 0.33 -1.7
746,189 + GFF691 0.33 -0.5
746,189 + GFF691 0.33 +0.2
746,190 - GFF691 0.33 +0.1
746,190 - GFF691 0.33 +0.5
746,190 - GFF691 0.33 +0.1
746,190 - GFF691 0.33 -0.3
746,190 - GFF691 0.33 +1.8
746,190 - GFF691 0.33 -0.2
746,486 + GFF691 0.53 -0.4
746,486 + GFF691 0.53 -0.1
746,487 - GFF691 0.53 +0.4
746,636 + GFF691 0.64 +0.6
746,637 - GFF691 0.64 -0.2
746,637 - GFF691 0.64 +0.9
746,637 - GFF691 0.64 -2.4
746,637 - GFF691 0.64 +0.5
746,637 - GFF691 0.64 +1.2
746,732 + GFF691 0.70 +1.3
746,733 - GFF691 0.70 -0.5
746,733 - GFF691 0.70 -0.3
746,939 + GFF691 0.85 +0.5
746,940 - GFF691 0.85 -0.2
746,940 - GFF691 0.85 -0.6
746,940 - GFF691 0.85 +0.8
746,940 - GFF691 0.85 +0.5
746,940 - GFF691 0.85 +0.2
746,940 - GFF691 0.85 -0.2
746,940 - GFF691 0.85 -0.4
746,940 - GFF691 0.85 +0.9
747,041 + -0.7
747,041 + -0.4
747,041 + -0.0
747,288 + +0.2
747,433 + GFF692 0.12 -2.0
747,600 + GFF692 0.28 -0.2
747,601 - GFF692 0.28 -1.2
747,601 - GFF692 0.28 +0.1
747,601 - GFF692 0.28 +0.1
747,612 + GFF692 0.30 -1.0
747,613 - GFF692 0.30 -0.8
747,613 - GFF692 0.30 -0.9
747,613 - GFF692 0.30 -1.2
747,667 - GFF692 0.35 -0.4
747,667 - GFF692 0.35 +0.3
747,774 + GFF692 0.46 -0.0
747,775 - GFF692 0.46 -0.5
747,805 - GFF692 0.49 +0.4
747,805 - GFF692 0.49 +0.4
747,805 - GFF692 0.49 -0.2
747,805 - GFF692 0.49 +0.0
747,805 - GFF692 0.49 -1.2
747,805 - GFF692 0.49 +0.1
747,805 - GFF692 0.49 +0.3
747,805 - GFF692 0.49 -1.0
747,805 - GFF692 0.49 +0.2
747,805 - GFF692 0.49 +0.4
747,805 - GFF692 0.49 -0.1
747,805 - GFF692 0.49 -0.1
747,805 - GFF692 0.49 -0.5
747,805 - GFF692 0.49 +0.2
747,805 - GFF692 0.49 -0.8
747,805 - GFF692 0.49 -0.9
747,805 - GFF692 0.49 -1.8
747,805 - GFF692 0.49 -0.1
747,805 - GFF692 0.49 -0.7
747,840 + GFF692 0.52 -0.1
747,840 + GFF692 0.52 +0.0
747,840 + GFF692 0.52 +0.2
747,891 + GFF692 0.58 -0.5
747,891 + GFF692 0.58 -0.4
747,891 + GFF692 0.58 +0.2
747,891 + GFF692 0.58 +0.3
747,891 + GFF692 0.58 +0.8
747,891 + GFF692 0.58 +1.8
747,892 - GFF692 0.58 +0.6
747,892 - GFF692 0.58 -0.3
747,942 + GFF692 0.63 +0.8
747,942 + GFF692 0.63 -1.4
747,942 + GFF692 0.63 +0.1
747,942 + GFF692 0.63 -1.4
747,942 + GFF692 0.63 +0.3
747,942 + GFF692 0.63 -0.2
747,942 + GFF692 0.63 -0.1
747,942 + GFF692 0.63 +0.8
747,942 + GFF692 0.63 +0.0
747,942 + GFF692 0.63 -0.8
747,942 + GFF692 0.63 +0.1
747,943 - GFF692 0.63 -1.8
747,943 - GFF692 0.63 -1.4
747,943 - GFF692 0.63 -0.7
747,943 - GFF692 0.63 -0.5
747,943 - GFF692 0.63 -1.2
747,943 - GFF692 0.63 +0.8
747,943 - GFF692 0.63 -0.3
747,943 - GFF692 0.63 -0.4
747,943 - GFF692 0.63 -0.2
747,943 - GFF692 0.63 -1.5
748,069 - GFF692 0.75 -0.6
748,069 - GFF692 0.75 +1.2
748,104 + GFF692 0.79 -1.7
748,104 + GFF692 0.79 -0.5
748,105 - GFF692 0.79 -0.8
748,105 - GFF692 0.79 -0.4

Or see this region's nucleotide sequence