Strain Fitness in Variovorax sp. SCN45 around GFF6884

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
16,320	+		GFF6883	0.26	-0.4
16,320	+		GFF6883	0.26	-0.2
16,320	+		GFF6883	0.26	-0.8
16,320	+		GFF6883	0.26	-0.5
16,320	+		GFF6883	0.26	-0.3
16,320	+		GFF6883	0.26	-0.2
16,320	+		GFF6883	0.26	-0.6
16,320	+		GFF6883	0.26	-0.0
16,320	+		GFF6883	0.26	-0.8
16,320	+		GFF6883	0.26	-0.7
16,320	+		GFF6883	0.26	+0.2
16,320	+		GFF6883	0.26	-1.1
16,320	+		GFF6883	0.26	+0.2
16,320	+		GFF6883	0.26	-0.8
16,320	+		GFF6883	0.26	-0.0
16,320	+		GFF6883	0.26	+1.6
16,320	+		GFF6883	0.26	-1.1
16,320	+		GFF6883	0.26	-0.6
16,320	+		GFF6883	0.26	-0.3
16,320	+		GFF6883	0.26	-0.3
16,320	+		GFF6883	0.26	-1.1
16,320	+		GFF6883	0.26	-0.1
16,320	+		GFF6883	0.26	-0.6
16,320	+		GFF6883	0.26	+1.4
16,320	+		GFF6883	0.26	-0.0
16,320	+		GFF6883	0.26	+0.3
16,320	+		GFF6883	0.26	-1.0
16,320	+		GFF6883	0.26	-0.1
16,320	+		GFF6883	0.26	-0.2
16,320	+		GFF6883	0.26	-0.4
16,320	+		GFF6883	0.26	-0.2
16,320	+		GFF6883	0.26	-0.5
16,320	+		GFF6883	0.26	-1.3
16,320	+		GFF6883	0.26	-0.6
16,320	+		GFF6883	0.26	-0.6
16,320	+		GFF6883	0.26	-0.1
16,320	+		GFF6883	0.26	+0.0
16,321	-		GFF6883	0.26	-1.7
16,321	-		GFF6883	0.26	-0.7
16,321	-		GFF6883	0.26	+0.1
16,321	-		GFF6883	0.26	-0.7
16,321	-		GFF6883	0.26	+0.5
16,321	-		GFF6883	0.26	-0.1
16,321	-		GFF6883	0.26	+0.2
16,321	-		GFF6883	0.26	-0.9
16,321	-		GFF6883	0.26	-0.5
16,321	-		GFF6883	0.26	-0.7
16,321	-		GFF6883	0.26	-0.4
16,321	-		GFF6883	0.26	-0.2
16,321	-		GFF6883	0.26	-1.5
16,321	-		GFF6883	0.26	-1.8
16,321	-		GFF6883	0.26	-2.3
16,321	-		GFF6883	0.26	+0.7
16,321	-		GFF6883	0.26	-1.0
16,321	-		GFF6883	0.26	-0.3
16,321	-		GFF6883	0.26	+0.4
16,321	-		GFF6883	0.26	+0.1
16,321	-		GFF6883	0.26	-1.3
16,321	-		GFF6883	0.26	-0.8
16,321	-		GFF6883	0.26	+0.3
16,321	-		GFF6883	0.26	-0.4
16,321	-		GFF6883	0.26	-0.2
16,321	-		GFF6883	0.26	+0.3
16,321	-		GFF6883	0.26	-1.2
16,321	-		GFF6883	0.26	+0.4
16,321	-		GFF6883	0.26	-0.5
16,321	-		GFF6883	0.26	-0.7
16,321	-		GFF6883	0.26	+0.1
16,321	-		GFF6883	0.26	-1.2
16,321	-		GFF6883	0.26	+0.3
16,321	-		GFF6883	0.26	-0.0
16,321	-		GFF6883	0.26	-0.1
16,321	-		GFF6883	0.26	+1.2
16,321	-		GFF6883	0.26	-0.3
16,321	-		GFF6883	0.26	+1.0
16,321	-		GFF6883	0.26	+0.7
16,321	-		GFF6883	0.26	-0.3
16,321	-		GFF6883	0.26	-0.0
16,321	-		GFF6883	0.26	-2.1
16,321	-		GFF6883	0.26	+2.0
16,322	+		GFF6883	0.26	-0.6
16,322	+		GFF6883	0.26	-1.0
16,322	+		GFF6883	0.26	-1.2
16,322	+		GFF6883	0.26	-0.9
16,322	+		GFF6883	0.26	-0.6
16,322	+		GFF6883	0.26	+0.5
16,322	+		GFF6883	0.26	-0.4
16,322	+		GFF6883	0.26	-0.3
16,322	+		GFF6883	0.26	-2.4
16,323	-		GFF6883	0.26	+0.1
16,323	-		GFF6883	0.26	-0.3
16,323	-		GFF6883	0.26	-0.4
16,323	-		GFF6883	0.26	-0.7
16,323	-		GFF6883	0.26	+0.8
16,323	-		GFF6883	0.26	-0.1
16,368	+		GFF6883	0.30	-0.3
16,368	+		GFF6883	0.30	-0.2
16,368	+		GFF6883	0.30	+0.6
16,368	+		GFF6883	0.30	+1.2
16,369	-		GFF6883	0.30	-0.2
16,369	-		GFF6883	0.30	-0.3
16,369	-		GFF6883	0.30	-0.3
16,369	-		GFF6883	0.30	-1.0
16,401	+		GFF6883	0.32	+0.2
16,401	+		GFF6883	0.32	-0.2
16,401	+		GFF6883	0.32	-0.5
16,401	+		GFF6883	0.32	-0.3
16,401	+		GFF6883	0.32	-1.2
16,401	+		GFF6883	0.32	+0.6
16,402	-		GFF6883	0.32	-0.7
16,402	-		GFF6883	0.32	-0.5
16,402	-		GFF6883	0.32	+0.1
16,402	-		GFF6883	0.32	+0.8
16,402	-		GFF6883	0.32	-1.5
16,551	+		GFF6883	0.44	-0.7
16,551	+		GFF6883	0.44	+1.4
16,551	+		GFF6883	0.44	+0.8
16,551	+		GFF6883	0.44	+0.4
16,551	+		GFF6883	0.44	-0.6
16,551	+		GFF6883	0.44	-0.9
16,551	+		GFF6883	0.44	+0.0
16,551	+		GFF6883	0.44	+0.4
16,551	+		GFF6883	0.44	-0.7
16,551	+		GFF6883	0.44	-0.7
16,551	+		GFF6883	0.44	-0.5
16,551	+		GFF6883	0.44	-0.2
16,551	+		GFF6883	0.44	-0.3
16,551	+		GFF6883	0.44	-0.1
16,552	-		GFF6883	0.44	-0.3
16,552	-		GFF6883	0.44	-0.3
16,552	-		GFF6883	0.44	-0.2
16,552	-		GFF6883	0.44	-0.8
16,552	-		GFF6883	0.44	-0.9
16,552	-		GFF6883	0.44	-0.1
16,552	-		GFF6883	0.44	+0.8
16,552	-		GFF6883	0.44	-0.2
16,636	+		GFF6883	0.50	-0.6
16,637	-		GFF6883	0.50	-0.6
16,637	-		GFF6883	0.50	-0.3
16,806	+		GFF6883	0.63	+1.1
16,806	+		GFF6883	0.63	-1.0
16,806	+		GFF6883	0.63	-0.0
16,807	-		GFF6883	0.63	-0.8
16,821	+		GFF6883	0.65	-1.3
16,822	-		GFF6883	0.65	+0.7
16,822	-		GFF6883	0.65	-0.1
16,908	+		GFF6883	0.71	+0.1
16,908	+		GFF6883	0.71	-0.8
16,908	+		GFF6883	0.71	-1.7
16,908	+		GFF6883	0.71	-0.5
16,908	+		GFF6883	0.71	-1.0
16,908	+		GFF6883	0.71	-0.3
16,908	+		GFF6883	0.71	+0.4
16,909	-		GFF6883	0.71	-1.1
16,909	-		GFF6883	0.71	-0.3
16,909	-		GFF6883	0.71	-0.4
16,909	-		GFF6883	0.71	+0.5
16,909	-		GFF6883	0.71	-1.2
16,909	-		GFF6883	0.71	+0.4
16,909	-		GFF6883	0.71	-1.0
16,965	+		GFF6883	0.76	+0.4
16,966	-		GFF6883	0.76	+0.7
16,966	-		GFF6883	0.76	+2.3
17,045	+		GFF6883	0.82	-0.6
17,045	+		GFF6883	0.82	-0.2
17,045	+		GFF6883	0.82	-1.9
17,045	+		GFF6883	0.82	+0.4
17,046	-		GFF6883	0.82	+0.6
17,046	-		GFF6883	0.82	-0.3
17,046	-		GFF6883	0.82	-0.7
17,046	-		GFF6883	0.82	-0.8
17,046	-		GFF6883	0.82	+0.2
17,046	-		GFF6883	0.82	+0.4
17,336	+				+0.1
17,336	+				-0.9
17,336	+				+0.8
17,336	+				-0.3
17,336	+				-0.5
17,337	-				+1.0
17,337	-				-0.6
17,337	-				-0.4
17,337	-				+0.1
17,337	-				+0.1
17,337	-				+1.0
17,337	-				-0.5
17,338	+				-0.6
17,338	+				+0.1
17,338	+				+0.0
17,338	+				-0.5
17,338	+				+1.8
17,338	+				-0.6
17,338	+				-0.6
17,338	+				+0.9
17,339	-				-0.7
17,339	-				-0.1
17,339	-				+0.2
17,339	-				-0.8
17,339	-				-0.0
17,339	-				+0.4
17,339	-				-1.1
17,339	-				-0.5
17,339	-				-1.3
17,339	-				+0.3
17,339	-				+1.0
17,344	+				-0.5
17,344	+				-1.3
17,344	+				+0.4
17,344	+				-0.1
17,344	+				-0.7
17,344	+				-1.8
17,344	+				-0.2
17,344	+				+0.2
17,344	+				-0.4
17,344	+				-0.3
17,344	+				-0.1
17,344	+				+0.1
17,345	-				-0.7
17,345	-				-0.2
17,345	-				-0.4
17,345	-				+1.6
17,345	-				-1.3
17,345	-				-1.4
17,345	-				+0.1
17,345	-				-0.4
17,345	-				-0.4
17,345	-				-0.2
17,345	-				-1.3
17,345	-				+0.7
17,345	-				+1.0
17,345	-				-0.3
17,345	-				-0.7
17,346	+				-1.2
17,346	+				-0.7
17,346	+				-1.1
17,346	+				-0.6
17,346	+				-0.5
17,346	+				-0.5
17,346	+				+0.7
17,346	+				-0.0
17,346	+				-0.7
17,346	+				-0.5
17,346	+				-0.2
17,346	+				-1.2
17,346	+				-0.0
17,346	+				-0.4
17,346	+				+0.2
17,346	+				+0.6
17,346	+				-0.9
17,346	+				+0.2
17,346	+				-0.1
17,346	+				+0.7
17,346	+				-0.7
17,346	+				-0.8
17,346	+				+0.4
17,346	+				+2.0
17,346	+				-1.2
17,346	+				-0.6
17,346	+				+0.1
17,346	+				+0.2
17,346	+				+0.3
17,346	+				+0.0
17,346	+				+0.8
17,346	+				-0.0
17,346	+				-0.3
17,346	+				+0.1
17,346	+				+0.2
17,346	+				-0.3
17,346	+				-1.7
17,346	+				-1.2
17,346	+				-0.7
17,346	+				+0.7
17,346	+				-0.5
17,346	+				-0.4
17,346	+				-0.4
17,346	+				-0.6
17,346	+				+1.4
17,346	+				+0.3
17,346	+				-1.0
17,346	+				-0.2
17,346	+				-0.0
17,346	+				-0.5
17,346	+				+0.5
17,346	+				-0.8
17,346	+				-0.1
17,346	+				+0.4
17,346	+				+0.5
17,346	+				-0.3
17,346	+				-1.5
17,346	+				+0.0
17,346	+				+1.0
17,346	+				+0.2
17,346	+				-0.9
17,346	+				-0.0
17,346	+				+0.8
17,346	+				-1.0
17,346	+				+0.4
17,346	+				-0.8
17,346	+				-0.8
17,346	+				-0.3
17,346	+				+0.1
17,346	+				-0.7
17,346	+				+0.2
17,346	+				+0.5
17,346	+				-0.5
17,346	+				-0.7
17,346	+				+1.4
17,346	+				+0.6
17,347	-				-0.7
17,347	-				-0.8
17,347	-				-0.2
17,347	-				-1.3
17,347	-				-0.7
17,347	-				+0.4
17,347	-				+0.5
17,347	-				-0.1
17,347	-				-0.3
17,347	-				+2.0
17,347	-				-0.1
17,347	-				-0.8
17,347	-				-0.4
17,347	-				+1.0
17,347	-				+1.0
17,347	-				-0.1
17,347	-				-0.2
17,347	-				-0.1
17,347	-				-1.5
17,347	-				-0.6
17,347	-				-0.2
17,347	-				-1.0
17,347	-				-0.0
17,347	-				+0.1
17,347	-				-0.0
17,347	-				-1.1
17,347	-				+0.9
17,347	-				-0.7
17,347	-				+0.2
17,347	-				+0.2
17,347	-				-1.1
17,347	-				+0.4
17,347	-				+0.3
17,347	-				-0.5
17,347	-				-0.2
17,347	-				-0.1
17,347	-				-0.8
17,347	-				-0.4
17,347	-				-0.1
17,347	-				-0.3
17,347	-				-1.3
17,347	-				-0.3
17,347	-				-0.3
17,347	-				-0.8
17,347	-				+1.0
17,347	-				+0.4
17,347	-				-1.2
17,347	-				-0.3
17,347	-				+0.2
17,347	-				-0.0
17,347	-				-0.3
17,347	-				-1.3
17,347	-				-0.5
17,347	-				-1.0
17,347	-				+0.2
17,347	-				-0.6
17,347	-				+0.1
17,347	-				+0.2
17,347	-				+1.1
17,347	-				-0.1
17,347	-				+0.5
17,347	-				-0.1
17,347	-				-1.0
17,347	-				-0.7
17,347	-				+1.0
17,347	-				-0.5
17,347	-				-1.0
17,347	-				+0.1
17,347	-				-0.9
17,347	-				+0.2
17,347	-				-0.6
17,347	-				-0.3
17,347	-				-0.4
17,347	-				-0.7
17,347	-				+0.1
17,347	-				+0.2
17,347	-				+0.1
17,347	-				-0.1
17,347	-				-0.3
17,347	-				-0.4
17,347	-				+0.0
17,347	-				+0.1
17,479	+		GFF6884	0.14	+1.0
17,479	+		GFF6884	0.14	-0.1
17,479	+		GFF6884	0.14	-0.2
17,479	+		GFF6884	0.14	+1.4
17,479	+		GFF6884	0.14	-1.0
17,479	+		GFF6884	0.14	+0.5
17,479	+		GFF6884	0.14	-0.6
17,479	+		GFF6884	0.14	+0.8
17,479	+		GFF6884	0.14	-1.0
17,479	+		GFF6884	0.14	-0.4
17,479	+		GFF6884	0.14	-2.0
17,479	+		GFF6884	0.14	+0.2
17,479	+		GFF6884	0.14	+1.2
17,479	+		GFF6884	0.14	-1.1
17,479	-		GFF6884	0.14	+1.0
17,480	-		GFF6884	0.14	-0.4
17,480	-		GFF6884	0.14	-0.8
17,480	-		GFF6884	0.14	+0.4
17,480	-		GFF6884	0.14	-0.6
17,480	-		GFF6884	0.14	+0.2
17,480	-		GFF6884	0.14	-1.2
17,480	-		GFF6884	0.14	+1.0
17,480	-		GFF6884	0.14	-0.2
17,480	-		GFF6884	0.14	-0.6
17,480	-		GFF6884	0.14	+0.6
17,480	-		GFF6884	0.14	-0.2
17,480	-		GFF6884	0.14	-0.8
17,480	-		GFF6884	0.14	-0.7
17,480	-		GFF6884	0.14	-0.8
17,480	-		GFF6884	0.14	-0.8
18,130	+		GFF6884	0.64	-0.3
18,130	+		GFF6884	0.64	+0.1
18,130	+		GFF6884	0.64	-2.1
18,130	+		GFF6884	0.64	+0.6
18,131	-		GFF6884	0.64	-0.3
18,131	-		GFF6884	0.64	-0.5
18,131	-		GFF6884	0.64	+0.6
18,213	-		GFF6884	0.71	-0.1
18,213	-		GFF6884	0.71	-1.2
18,274	+		GFF6884	0.75	-0.8
18,274	+		GFF6884	0.75	+0.6
18,274	+		GFF6884	0.75	-1.0
18,274	+		GFF6884	0.75	-0.2
18,274	+		GFF6884	0.75	-0.3
18,275	-		GFF6884	0.75	+1.0
18,275	-		GFF6884	0.75	+0.4
18,275	-		GFF6884	0.75	-0.9
18,275	-		GFF6884	0.75	-0.6
18,328	+		GFF6884	0.79	-0.1
18,328	+		GFF6884	0.79	-0.4
18,329	-		GFF6884	0.80	-0.0
18,329	-		GFF6884	0.80	-0.0
18,329	-		GFF6884	0.80	-0.1
18,436	+		GFF6884	0.88	-0.3
18,437	-		GFF6884	0.88	-0.9
18,451	+		GFF6884	0.89	-0.0
18,451	+		GFF6884	0.89	-0.3
18,451	+		GFF6884	0.89	-1.2
18,451	+		GFF6884	0.89	-0.3
18,451	+		GFF6884	0.89	-0.5
18,451	+		GFF6884	0.89	-1.4
18,451	+		GFF6884	0.89	-1.2
18,451	+		GFF6884	0.89	-0.0
18,451	+		GFF6884	0.89	+0.2
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