Strain Fitness in Variovorax sp. SCN45 around GFF687

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF686 and GFF687 are separated by 122 nucleotidesGFF687 and GFF688 overlap by 4 nucleotidesGFF688 and GFF689 overlap by 4 nucleotides GFF686 - porin, Gram-negative type, at 740,038 to 741,165 GFF686 GFF687 - Dihydroxy-acid dehydratase (EC 4.2.1.9), at 741,288 to 742,988 GFF687 GFF688 - Uncharacterized conserved protein, at 742,985 to 743,437 GFF688 GFF689 - protein of unknown function DUF521, at 743,434 to 744,729 GFF689 Position (kb) 741 742 743Strain fitness (log2 ratio) -1 0 1 2 3at 740.371 kb on - strand, within GFF686at 740.371 kb on - strand, within GFF686at 740.390 kb on + strand, within GFF686at 740.390 kb on + strand, within GFF686at 740.391 kb on - strand, within GFF686at 740.391 kb on - strand, within GFF686at 740.450 kb on + strand, within GFF686at 740.450 kb on + strand, within GFF686at 740.450 kb on + strand, within GFF686at 740.451 kb on - strand, within GFF686at 740.477 kb on - strand, within GFF686at 740.612 kb on + strand, within GFF686at 740.642 kb on + strand, within GFF686at 740.643 kb on - strand, within GFF686at 740.643 kb on - strand, within GFF686at 740.643 kb on - strand, within GFF686at 740.643 kb on - strand, within GFF686at 740.753 kb on + strand, within GFF686at 740.753 kb on + strand, within GFF686at 740.753 kb on + strand, within GFF686at 740.753 kb on + strand, within GFF686at 740.754 kb on - strand, within GFF686at 740.754 kb on - strand, within GFF686at 740.754 kb on - strand, within GFF686at 740.754 kb on - strand, within GFF686at 740.765 kb on + strand, within GFF686at 740.765 kb on + strand, within GFF686at 740.766 kb on - strand, within GFF686at 740.766 kb on - strand, within GFF686at 740.766 kb on - strand, within GFF686at 741.060 kb on - strandat 741.060 kb on - strandat 741.060 kb on - strandat 741.160 kb on - strandat 741.361 kb on + strandat 741.362 kb on - strandat 742.114 kb on + strand, within GFF687at 742.115 kb on - strand, within GFF687at 742.528 kb on + strand, within GFF687at 742.528 kb on + strand, within GFF687at 742.528 kb on + strand, within GFF687at 742.528 kb on + strand, within GFF687at 742.529 kb on - strand, within GFF687at 742.529 kb on - strand, within GFF687at 742.529 kb on - strand, within GFF687at 742.529 kb on - strand, within GFF687at 742.529 kb on - strand, within GFF687at 742.547 kb on - strand, within GFF687at 742.711 kb on + strand, within GFF687at 742.711 kb on + strand, within GFF687at 742.711 kb on + strand, within GFF687at 742.711 kb on + strand, within GFF687at 742.711 kb on + strand, within GFF687at 742.711 kb on + strand, within GFF687at 742.712 kb on - strand, within GFF687at 742.712 kb on - strand, within GFF687at 742.948 kb on + strandat 742.948 kb on + strandat 742.948 kb on + strandat 742.948 kb on + strandat 742.948 kb on + strandat 742.949 kb on - strandat 742.949 kb on - strandat 743.441 kb on + strandat 743.442 kb on - strandat 743.442 kb on - strandat 743.531 kb on + strandat 743.531 kb on + strandat 743.531 kb on + strandat 743.771 kb on + strand, within GFF689at 743.772 kb on - strand, within GFF689at 743.772 kb on - strand, within GFF689at 743.772 kb on - strand, within GFF689at 743.772 kb on - strand, within GFF689at 743.772 kb on - strand, within GFF689at 743.772 kb on - strand, within GFF689at 743.772 kb on - strand, within GFF689at 743.795 kb on + strand, within GFF689at 743.795 kb on + strand, within GFF689at 743.795 kb on + strand, within GFF689at 743.795 kb on + strand, within GFF689at 743.795 kb on + strand, within GFF689at 743.796 kb on - strand, within GFF689at 743.796 kb on - strand, within GFF689at 743.837 kb on + strand, within GFF689at 743.838 kb on - strand, within GFF689at 743.865 kb on - strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.946 kb on - strand, within GFF689at 743.946 kb on - strand, within GFF689at 743.946 kb on - strand, within GFF689at 743.946 kb on - strand, within GFF689at 743.946 kb on - strand, within GFF689at 743.946 kb on - strand, within GFF689

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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740,371 - GFF686 0.30 +0.0
740,371 - GFF686 0.30 -0.2
740,390 + GFF686 0.31 +0.0
740,390 + GFF686 0.31 +1.1
740,391 - GFF686 0.31 -0.3
740,391 - GFF686 0.31 -0.7
740,450 + GFF686 0.37 -0.5
740,450 + GFF686 0.37 -0.4
740,450 + GFF686 0.37 +1.8
740,451 - GFF686 0.37 -0.2
740,477 - GFF686 0.39 -0.5
740,612 + GFF686 0.51 +0.1
740,642 + GFF686 0.54 -0.1
740,643 - GFF686 0.54 -0.2
740,643 - GFF686 0.54 -0.2
740,643 - GFF686 0.54 +0.5
740,643 - GFF686 0.54 -0.7
740,753 + GFF686 0.63 +0.9
740,753 + GFF686 0.63 -0.2
740,753 + GFF686 0.63 -0.5
740,753 + GFF686 0.63 +0.8
740,754 - GFF686 0.63 -0.3
740,754 - GFF686 0.63 +0.0
740,754 - GFF686 0.63 +0.8
740,754 - GFF686 0.63 -0.7
740,765 + GFF686 0.64 -0.4
740,765 + GFF686 0.64 -0.8
740,766 - GFF686 0.65 -0.6
740,766 - GFF686 0.65 +0.3
740,766 - GFF686 0.65 +0.8
741,060 - +0.9
741,060 - -0.1
741,060 - -0.1
741,160 - +0.1
741,361 + -0.2
741,362 - +2.1
742,114 + GFF687 0.49 -0.1
742,115 - GFF687 0.49 +0.6
742,528 + GFF687 0.73 -0.4
742,528 + GFF687 0.73 -0.8
742,528 + GFF687 0.73 -0.9
742,528 + GFF687 0.73 +0.2
742,529 - GFF687 0.73 -1.2
742,529 - GFF687 0.73 -1.4
742,529 - GFF687 0.73 +0.8
742,529 - GFF687 0.73 -0.4
742,529 - GFF687 0.73 -0.6
742,547 - GFF687 0.74 -0.8
742,711 + GFF687 0.84 -1.0
742,711 + GFF687 0.84 +0.2
742,711 + GFF687 0.84 +0.6
742,711 + GFF687 0.84 -1.3
742,711 + GFF687 0.84 +0.1
742,711 + GFF687 0.84 +0.2
742,712 - GFF687 0.84 -0.1
742,712 - GFF687 0.84 -0.9
742,948 + +0.3
742,948 + -0.1
742,948 + -0.5
742,948 + +0.8
742,948 + +0.7
742,949 - +0.5
742,949 - +1.5
743,441 + +0.1
743,442 - +0.6
743,442 - -0.3
743,531 + -0.5
743,531 + +0.4
743,531 + -0.5
743,771 + GFF689 0.26 +0.2
743,772 - GFF689 0.26 +0.3
743,772 - GFF689 0.26 -0.7
743,772 - GFF689 0.26 -0.5
743,772 - GFF689 0.26 +0.2
743,772 - GFF689 0.26 -0.6
743,772 - GFF689 0.26 +0.3
743,772 - GFF689 0.26 -1.4
743,795 + GFF689 0.28 -0.8
743,795 + GFF689 0.28 +0.8
743,795 + GFF689 0.28 +0.4
743,795 + GFF689 0.28 +1.1
743,795 + GFF689 0.28 +1.2
743,796 - GFF689 0.28 -1.4
743,796 - GFF689 0.28 +0.4
743,837 + GFF689 0.31 +0.6
743,838 - GFF689 0.31 -1.4
743,865 - GFF689 0.33 +0.0
743,945 + GFF689 0.39 +0.2
743,945 + GFF689 0.39 -1.4
743,945 + GFF689 0.39 -0.5
743,945 + GFF689 0.39 +1.2
743,945 + GFF689 0.39 +3.1
743,945 + GFF689 0.39 -0.1
743,945 + GFF689 0.39 +0.8
743,945 + GFF689 0.39 +0.2
743,945 + GFF689 0.39 -0.1
743,945 + GFF689 0.39 -0.8
743,945 + GFF689 0.39 -0.1
743,945 + GFF689 0.39 -0.3
743,946 - GFF689 0.40 +1.0
743,946 - GFF689 0.40 +2.4
743,946 - GFF689 0.40 +0.8
743,946 - GFF689 0.40 +0.4
743,946 - GFF689 0.40 -0.5
743,946 - GFF689 0.40 -0.4

Or see this region's nucleotide sequence