Strain Fitness in Variovorax sp. SCN45 around GFF6862

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6860 and GFF6861 overlap by 4 nucleotidesGFF6861 and GFF6862 are separated by 93 nucleotidesGFF6862 and GFF6863 are separated by 106 nucleotides GFF6860 - Epoxide hydrolase (EC 3.3.2.9), at 53,152 to 54,186 GFF6860 GFF6861 - no description, at 54,183 to 54,347 GFF6861 GFF6862 - Two-component system sensor histidine kinase, at 54,441 to 55,793 GFF6862 GFF6863 - DipZ protein, at 55,900 to 57,666 GFF6863 Position (kb) 54 55 56Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 53.445 kb on - strand, within GFF6860at 53.445 kb on - strand, within GFF6860at 53.445 kb on - strand, within GFF6860at 53.496 kb on - strand, within GFF6860at 53.496 kb on - strand, within GFF6860at 53.588 kb on + strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.591 kb on + strand, within GFF6860at 53.591 kb on + strand, within GFF6860at 53.591 kb on + strand, within GFF6860at 53.591 kb on + strand, within GFF6860at 53.592 kb on - strand, within GFF6860at 53.592 kb on - strand, within GFF6860at 53.592 kb on - strand, within GFF6860at 53.597 kb on + strand, within GFF6860at 53.663 kb on + strand, within GFF6860at 53.663 kb on + strand, within GFF6860at 53.663 kb on + strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.744 kb on + strand, within GFF6860at 53.745 kb on - strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.951 kb on + strand, within GFF6860at 53.951 kb on + strand, within GFF6860at 53.999 kb on + strand, within GFF6860at 53.999 kb on + strand, within GFF6860at 53.999 kb on + strand, within GFF6860at 53.999 kb on + strand, within GFF6860at 54.002 kb on + strand, within GFF6860at 54.003 kb on - strand, within GFF6860at 54.243 kb on + strand, within GFF6861at 54.243 kb on + strand, within GFF6861at 54.243 kb on + strand, within GFF6861at 54.243 kb on + strand, within GFF6861at 54.244 kb on - strand, within GFF6861at 54.244 kb on - strand, within GFF6861at 54.244 kb on - strand, within GFF6861at 54.244 kb on - strand, within GFF6861at 54.244 kb on - strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.277 kb on - strand, within GFF6861at 54.277 kb on - strand, within GFF6861at 54.277 kb on - strand, within GFF6861at 54.277 kb on - strand, within GFF6861at 54.286 kb on + strand, within GFF6861at 54.286 kb on + strand, within GFF6861at 54.287 kb on - strand, within GFF6861at 54.287 kb on - strand, within GFF6861at 54.305 kb on - strand, within GFF6861at 54.314 kb on + strand, within GFF6861at 54.314 kb on + strand, within GFF6861at 54.314 kb on + strand, within GFF6861at 54.314 kb on + strand, within GFF6861at 54.314 kb on + strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.354 kb on + strandat 54.354 kb on + strandat 54.355 kb on - strandat 54.355 kb on - strandat 54.383 kb on - strandat 54.394 kb on + strandat 54.394 kb on + strandat 54.394 kb on + strandat 54.394 kb on + strandat 54.394 kb on + strandat 54.394 kb on + strandat 54.395 kb on - strandat 54.395 kb on - strandat 54.395 kb on - strandat 54.395 kb on - strandat 54.428 kb on + strandat 54.428 kb on + strandat 54.428 kb on + strandat 54.428 kb on + strandat 54.429 kb on - strandat 54.429 kb on - strandat 54.429 kb on - strandat 54.429 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.579 kb on + strand, within GFF6862at 54.714 kb on + strand, within GFF6862at 54.714 kb on + strand, within GFF6862at 54.715 kb on - strand, within GFF6862at 54.955 kb on + strand, within GFF6862at 54.955 kb on + strand, within GFF6862at 54.956 kb on - strand, within GFF6862at 54.988 kb on - strand, within GFF6862at 55.147 kb on - strand, within GFF6862at 55.147 kb on - strand, within GFF6862at 55.311 kb on + strand, within GFF6862at 55.311 kb on + strand, within GFF6862at 55.312 kb on - strand, within GFF6862at 55.312 kb on - strand, within GFF6862at 55.312 kb on - strand, within GFF6862at 55.312 kb on - strand, within GFF6862at 55.393 kb on - strand, within GFF6862at 55.624 kb on - strand, within GFF6862at 55.767 kb on + strandat 55.767 kb on + strandat 55.768 kb on - strandat 55.768 kb on - strandat 55.768 kb on - strandat 55.768 kb on - strandat 55.768 kb on - strandat 55.768 kb on - strandat 55.921 kb on + strandat 55.921 kb on + strandat 56.107 kb on + strand, within GFF6863at 56.116 kb on + strand, within GFF6863at 56.116 kb on + strand, within GFF6863

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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53,445 - GFF6860 0.28 -0.5
53,445 - GFF6860 0.28 +0.3
53,445 - GFF6860 0.28 +0.6
53,496 - GFF6860 0.33 -0.3
53,496 - GFF6860 0.33 -0.1
53,588 + GFF6860 0.42 +2.0
53,589 - GFF6860 0.42 -0.3
53,589 - GFF6860 0.42 -0.6
53,589 - GFF6860 0.42 +0.6
53,589 - GFF6860 0.42 +0.2
53,589 - GFF6860 0.42 +0.9
53,591 + GFF6860 0.42 +0.3
53,591 + GFF6860 0.42 -0.3
53,591 + GFF6860 0.42 +0.2
53,591 + GFF6860 0.42 +0.3
53,592 - GFF6860 0.43 +0.8
53,592 - GFF6860 0.43 -0.3
53,592 - GFF6860 0.43 -0.1
53,597 + GFF6860 0.43 +1.0
53,663 + GFF6860 0.49 -1.1
53,663 + GFF6860 0.49 +1.6
53,663 + GFF6860 0.49 +0.1
53,664 - GFF6860 0.49 +0.6
53,664 - GFF6860 0.49 +0.6
53,664 - GFF6860 0.49 +0.2
53,664 - GFF6860 0.49 +0.2
53,664 - GFF6860 0.49 +0.2
53,744 + GFF6860 0.57 +0.2
53,745 - GFF6860 0.57 +0.2
53,930 + GFF6860 0.75 +0.6
53,930 + GFF6860 0.75 -0.5
53,930 + GFF6860 0.75 -0.2
53,930 + GFF6860 0.75 -0.4
53,930 + GFF6860 0.75 -1.0
53,931 - GFF6860 0.75 +1.6
53,931 - GFF6860 0.75 -0.2
53,931 - GFF6860 0.75 -0.4
53,931 - GFF6860 0.75 -0.4
53,931 - GFF6860 0.75 -1.5
53,931 - GFF6860 0.75 -0.4
53,951 + GFF6860 0.77 -0.7
53,951 + GFF6860 0.77 +0.4
53,999 + GFF6860 0.82 -1.0
53,999 + GFF6860 0.82 -0.2
53,999 + GFF6860 0.82 +0.1
53,999 + GFF6860 0.82 +0.5
54,002 + GFF6860 0.82 -0.0
54,003 - GFF6860 0.82 -0.2
54,243 + GFF6861 0.36 -0.6
54,243 + GFF6861 0.36 +0.6
54,243 + GFF6861 0.36 -0.4
54,243 + GFF6861 0.36 +1.0
54,244 - GFF6861 0.37 -0.7
54,244 - GFF6861 0.37 -0.3
54,244 - GFF6861 0.37 +0.4
54,244 - GFF6861 0.37 -0.2
54,244 - GFF6861 0.37 -0.2
54,276 + GFF6861 0.56 +1.6
54,276 + GFF6861 0.56 -0.4
54,276 + GFF6861 0.56 +0.7
54,276 + GFF6861 0.56 -0.8
54,276 + GFF6861 0.56 -0.9
54,276 + GFF6861 0.56 -0.1
54,276 + GFF6861 0.56 -0.8
54,276 + GFF6861 0.56 -0.5
54,276 + GFF6861 0.56 -1.2
54,277 - GFF6861 0.57 +0.6
54,277 - GFF6861 0.57 -0.4
54,277 - GFF6861 0.57 +0.2
54,277 - GFF6861 0.57 -0.7
54,286 + GFF6861 0.62 +0.1
54,286 + GFF6861 0.62 -0.4
54,287 - GFF6861 0.63 -0.9
54,287 - GFF6861 0.63 +0.0
54,305 - GFF6861 0.74 -0.4
54,314 + GFF6861 0.79 +0.8
54,314 + GFF6861 0.79 +1.0
54,314 + GFF6861 0.79 -1.0
54,314 + GFF6861 0.79 +0.3
54,314 + GFF6861 0.79 -0.0
54,315 - GFF6861 0.80 +0.1
54,315 - GFF6861 0.80 -0.4
54,315 - GFF6861 0.80 +1.0
54,315 - GFF6861 0.80 -0.1
54,315 - GFF6861 0.80 +0.3
54,315 - GFF6861 0.80 +0.3
54,315 - GFF6861 0.80 +0.3
54,354 + -0.7
54,354 + +0.4
54,355 - -0.1
54,355 - -0.4
54,383 - -0.4
54,394 + -1.0
54,394 + +0.2
54,394 + -0.5
54,394 + -2.2
54,394 + -0.5
54,394 + -0.8
54,395 - -1.5
54,395 - +0.2
54,395 - -1.6
54,395 - -0.4
54,428 + -0.0
54,428 + -0.0
54,428 + +0.2
54,428 + -0.5
54,429 - -0.8
54,429 - -1.4
54,429 - +1.2
54,429 - -0.0
54,431 - -0.4
54,431 - +0.4
54,431 - -0.0
54,431 - -0.2
54,579 + GFF6862 0.10 -0.8
54,714 + GFF6862 0.20 -2.6
54,714 + GFF6862 0.20 -0.2
54,715 - GFF6862 0.20 -3.7
54,955 + GFF6862 0.38 +0.5
54,955 + GFF6862 0.38 +0.2
54,956 - GFF6862 0.38 -0.7
54,988 - GFF6862 0.40 -1.2
55,147 - GFF6862 0.52 -0.8
55,147 - GFF6862 0.52 -1.8
55,311 + GFF6862 0.64 -0.3
55,311 + GFF6862 0.64 -0.8
55,312 - GFF6862 0.64 +0.0
55,312 - GFF6862 0.64 -0.4
55,312 - GFF6862 0.64 +0.6
55,312 - GFF6862 0.64 -1.1
55,393 - GFF6862 0.70 -1.3
55,624 - GFF6862 0.87 -0.0
55,767 + +0.2
55,767 + -0.6
55,768 - -0.5
55,768 - +0.8
55,768 - -0.7
55,768 - +0.4
55,768 - +0.8
55,768 - -0.8
55,921 + -0.1
55,921 + -0.7
56,107 + GFF6863 0.12 -0.2
56,116 + GFF6863 0.12 -1.5
56,116 + GFF6863 0.12 -1.6

Or see this region's nucleotide sequence