Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6818 and GFF6819 are separated by 333 nucleotides GFF6819 and GFF6820 are separated by 21 nucleotides GFF6820 and GFF6821 are separated by 56 nucleotides GFF6821 and GFF6822 are separated by 27 nucleotides
GFF6818 - hypothetical protein, at 2,085 to 5,882
GFF6818
GFF6819 - hypothetical protein, at 6,216 to 7,082
GFF6819
GFF6820 - hypothetical protein, at 7,104 to 7,367
GFF6820
GFF6821 - ribonuclease H, at 7,424 to 7,897
GFF6821
GFF6822 - Peptidase C14, caspase catalytic subunit p20, at 7,925 to 8,404
GFF6822
Position (kb) 6
7
8 Strain fitness (log2 ratio) -1
0
1
2
3 at 5.234 kb on + strand, within GFF6818 at 5.310 kb on + strand, within GFF6818 at 5.310 kb on + strand, within GFF6818 at 5.310 kb on + strand, within GFF6818 at 5.311 kb on - strand, within GFF6818 at 5.311 kb on - strand, within GFF6818 at 5.311 kb on - strand, within GFF6818 at 5.311 kb on - strand, within GFF6818 at 5.313 kb on + strand, within GFF6818 at 5.313 kb on + strand, within GFF6818 at 5.313 kb on + strand, within GFF6818 at 5.313 kb on + strand, within GFF6818 at 5.313 kb on + strand, within GFF6818 at 5.313 kb on + strand, within GFF6818 at 5.314 kb on - strand, within GFF6818 at 5.314 kb on - strand, within GFF6818 at 5.314 kb on - strand, within GFF6818 at 5.325 kb on + strand, within GFF6818 at 5.325 kb on + strand, within GFF6818 at 5.326 kb on - strand, within GFF6818 at 5.326 kb on - strand, within GFF6818 at 5.362 kb on - strand, within GFF6818 at 5.496 kb on + strand, within GFF6818 at 5.497 kb on - strand, within GFF6818 at 5.497 kb on - strand, within GFF6818 at 5.497 kb on - strand, within GFF6818 at 5.497 kb on - strand, within GFF6818 at 5.497 kb on - strand, within GFF6818 at 5.558 kb on + strand at 5.559 kb on - strand at 5.559 kb on - strand at 5.567 kb on - strand at 5.567 kb on - strand at 5.583 kb on + strand at 5.583 kb on + strand at 5.583 kb on + strand at 5.584 kb on - strand at 5.584 kb on - strand at 5.605 kb on + strand at 5.605 kb on + strand at 5.631 kb on - strand at 5.704 kb on + strand at 5.704 kb on + strand at 5.704 kb on + strand at 5.705 kb on - strand at 5.738 kb on + strand at 5.739 kb on - strand at 5.795 kb on + strand at 5.795 kb on + strand at 5.834 kb on + strand at 5.872 kb on + strand at 5.873 kb on - strand at 5.873 kb on - strand at 5.873 kb on - strand at 5.873 kb on - strand at 5.880 kb on + strand at 5.880 kb on + strand at 5.917 kb on + strand at 5.918 kb on - strand at 5.918 kb on - strand at 6.050 kb on + strand at 6.050 kb on + strand at 6.050 kb on + strand at 6.050 kb on + strand at 6.051 kb on - strand at 6.051 kb on - strand at 6.051 kb on - strand at 6.051 kb on - strand at 6.051 kb on - strand at 6.051 kb on - strand at 6.301 kb on - strand at 6.657 kb on + strand, within GFF6819 at 6.715 kb on - strand, within GFF6819 at 6.990 kb on + strand, within GFF6819 at 6.990 kb on + strand, within GFF6819 at 6.990 kb on + strand, within GFF6819 at 6.990 kb on + strand, within GFF6819 at 6.991 kb on - strand, within GFF6819 at 6.991 kb on - strand, within GFF6819 at 7.105 kb on + strand at 7.105 kb on + strand at 7.105 kb on + strand at 7.105 kb on + strand at 7.106 kb on - strand at 7.106 kb on - strand at 7.111 kb on + strand at 7.111 kb on + strand at 7.111 kb on + strand at 7.111 kb on + strand at 7.111 kb on + strand at 7.111 kb on + strand at 7.111 kb on + strand at 7.112 kb on - strand at 7.112 kb on - strand at 7.112 kb on - strand at 7.112 kb on - strand at 7.112 kb on - strand at 7.112 kb on - strand at 7.114 kb on + strand at 7.114 kb on + strand at 7.114 kb on + strand at 7.114 kb on + strand at 7.115 kb on - strand at 7.115 kb on - strand at 7.115 kb on - strand at 7.115 kb on - strand at 7.213 kb on + strand, within GFF6820 at 7.213 kb on + strand, within GFF6820 at 7.213 kb on + strand, within GFF6820 at 7.214 kb on - strand, within GFF6820 at 7.214 kb on - strand, within GFF6820 at 7.268 kb on - strand, within GFF6820 at 7.355 kb on + strand at 7.380 kb on + strand at 7.381 kb on - strand at 7.653 kb on + strand, within GFF6821 at 7.653 kb on + strand, within GFF6821 at 7.653 kb on + strand, within GFF6821 at 7.653 kb on + strand, within GFF6821 at 7.653 kb on + strand, within GFF6821 at 7.653 kb on + strand, within GFF6821 at 7.654 kb on - strand, within GFF6821 at 7.654 kb on - strand, within GFF6821 at 7.654 kb on - strand, within GFF6821 at 7.845 kb on + strand, within GFF6821 at 7.845 kb on + strand, within GFF6821 at 7.845 kb on + strand, within GFF6821 at 7.845 kb on + strand, within GFF6821 at 7.845 kb on + strand, within GFF6821 at 7.845 kb on + strand, within GFF6821 at 7.846 kb on - strand, within GFF6821 at 7.846 kb on - strand, within GFF6821 at 7.846 kb on - strand, within GFF6821 at 7.846 kb on - strand, within GFF6821 at 7.846 kb on - strand, within GFF6821 at 7.846 kb on - strand, within GFF6821 at 7.846 kb on - strand, within GFF6821 at 7.846 kb on - strand, within GFF6821 at 8.040 kb on + strand, within GFF6822 at 8.040 kb on + strand, within GFF6822 at 8.041 kb on - strand, within GFF6822 at 8.041 kb on - strand, within GFF6822 at 8.041 kb on - strand, within GFF6822 at 8.041 kb on - strand, within GFF6822 at 8.043 kb on + strand, within GFF6822 at 8.044 kb on - strand, within GFF6822 at 8.044 kb on - strand, within GFF6822 at 8.052 kb on + strand, within GFF6822 at 8.052 kb on + strand, within GFF6822 at 8.052 kb on + strand, within GFF6822 at 8.053 kb on - strand, within GFF6822 at 8.053 kb on - strand, within GFF6822 at 8.053 kb on - strand, within GFF6822 at 8.053 kb on - strand, within GFF6822 at 8.053 kb on - strand, within GFF6822 at 8.053 kb on - strand, within GFF6822 at 8.056 kb on - strand, within GFF6822
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 5,234 + GFF6818 0.83 +0.3 5,310 + GFF6818 0.85 +0.6 5,310 + GFF6818 0.85 -0.5 5,310 + GFF6818 0.85 +1.6 5,311 - GFF6818 0.85 +0.6 5,311 - GFF6818 0.85 -0.6 5,311 - GFF6818 0.85 +1.6 5,311 - GFF6818 0.85 -0.1 5,313 + GFF6818 0.85 +1.4 5,313 + GFF6818 0.85 +0.1 5,313 + GFF6818 0.85 +0.8 5,313 + GFF6818 0.85 +1.2 5,313 + GFF6818 0.85 -0.1 5,313 + GFF6818 0.85 -0.2 5,314 - GFF6818 0.85 +0.2 5,314 - GFF6818 0.85 +0.1 5,314 - GFF6818 0.85 -0.4 5,325 + GFF6818 0.85 +0.6 5,325 + GFF6818 0.85 +0.1 5,326 - GFF6818 0.85 -0.1 5,326 - GFF6818 0.85 +1.3 5,362 - GFF6818 0.86 -0.1 5,496 + GFF6818 0.90 -0.5 5,497 - GFF6818 0.90 +1.6 5,497 - GFF6818 0.90 -0.3 5,497 - GFF6818 0.90 +0.6 5,497 - GFF6818 0.90 +0.6 5,497 - GFF6818 0.90 +1.0 5,558 + +0.9 5,559 - -0.0 5,559 - -0.1 5,567 - -0.2 5,567 - +0.2 5,583 + -0.6 5,583 + -0.8 5,583 + +0.0 5,584 - -0.3 5,584 - -0.8 5,605 + -0.1 5,605 + +3.6 5,631 - -0.5 5,704 + +0.8 5,704 + -0.1 5,704 + +1.3 5,705 - -1.3 5,738 + +0.4 5,739 - +0.2 5,795 + -0.3 5,795 + +2.6 5,834 + +0.1 5,872 + +0.5 5,873 - -0.5 5,873 - -0.1 5,873 - -0.1 5,873 - -0.8 5,880 + +0.7 5,880 + -0.4 5,917 + +0.0 5,918 - +0.2 5,918 - -0.3 6,050 + -0.0 6,050 + -0.2 6,050 + -0.5 6,050 + -0.2 6,051 - +0.2 6,051 - -0.1 6,051 - +0.2 6,051 - +1.0 6,051 - +0.3 6,051 - +2.2 6,301 - -0.1 6,657 + GFF6819 0.51 +0.1 6,715 - GFF6819 0.58 -0.1 6,990 + GFF6819 0.89 -0.0 6,990 + GFF6819 0.89 -1.1 6,990 + GFF6819 0.89 -0.1 6,990 + GFF6819 0.89 -0.8 6,991 - GFF6819 0.89 +0.4 6,991 - GFF6819 0.89 +0.5 7,105 + -0.2 7,105 + +0.9 7,105 + -0.8 7,105 + +0.4 7,106 - -0.5 7,106 - +0.2 7,111 + -0.5 7,111 + +0.2 7,111 + +0.5 7,111 + -1.0 7,111 + -0.2 7,111 + -0.8 7,111 + +0.5 7,112 - -0.4 7,112 - -0.4 7,112 - +0.6 7,112 - +0.5 7,112 - +0.2 7,112 - +1.6 7,114 + -0.6 7,114 + +0.2 7,114 + +1.6 7,114 + +1.5 7,115 - +0.6 7,115 - -1.0 7,115 - -0.6 7,115 - -1.0 7,213 + GFF6820 0.41 -0.3 7,213 + GFF6820 0.41 -0.8 7,213 + GFF6820 0.41 -1.7 7,214 - GFF6820 0.42 +0.1 7,214 - GFF6820 0.42 -0.2 7,268 - GFF6820 0.62 -0.2 7,355 + -0.0 7,380 + -0.0 7,381 - -0.8 7,653 + GFF6821 0.48 +0.3 7,653 + GFF6821 0.48 -0.4 7,653 + GFF6821 0.48 -0.1 7,653 + GFF6821 0.48 -0.5 7,653 + GFF6821 0.48 -0.6 7,653 + GFF6821 0.48 +0.6 7,654 - GFF6821 0.49 -0.5 7,654 - GFF6821 0.49 -0.7 7,654 - GFF6821 0.49 -0.3 7,845 + GFF6821 0.89 +0.2 7,845 + GFF6821 0.89 -0.0 7,845 + GFF6821 0.89 -1.2 7,845 + GFF6821 0.89 +3.6 7,845 + GFF6821 0.89 -0.2 7,845 + GFF6821 0.89 -0.8 7,846 - GFF6821 0.89 -0.6 7,846 - GFF6821 0.89 -0.7 7,846 - GFF6821 0.89 -0.3 7,846 - GFF6821 0.89 -1.2 7,846 - GFF6821 0.89 +0.1 7,846 - GFF6821 0.89 +2.0 7,846 - GFF6821 0.89 +0.2 7,846 - GFF6821 0.89 -0.8 8,040 + GFF6822 0.24 +0.8 8,040 + GFF6822 0.24 -0.0 8,041 - GFF6822 0.24 +1.2 8,041 - GFF6822 0.24 -0.1 8,041 - GFF6822 0.24 +0.3 8,041 - GFF6822 0.24 -0.1 8,043 + GFF6822 0.25 -0.2 8,044 - GFF6822 0.25 +0.7 8,044 - GFF6822 0.25 +0.3 8,052 + GFF6822 0.26 -0.5 8,052 + GFF6822 0.26 +0.3 8,052 + GFF6822 0.26 +0.6 8,053 - GFF6822 0.27 -0.0 8,053 - GFF6822 0.27 -0.2 8,053 - GFF6822 0.27 -0.0 8,053 - GFF6822 0.27 -0.9 8,053 - GFF6822 0.27 +0.4 8,053 - GFF6822 0.27 +0.2 8,056 - GFF6822 0.27 -0.3
Or see this region's nucleotide sequence