Strain Fitness in Variovorax sp. SCN45 around GFF6762

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
8,173	+		GFF6761	0.58	-0.1
8,173	+		GFF6761	0.58	+1.5
8,173	+		GFF6761	0.58	+0.3
8,173	+		GFF6761	0.58	+0.7
8,173	+		GFF6761	0.58	-0.2
8,173	+		GFF6761	0.58	-0.1
8,173	+		GFF6761	0.58	-0.5
8,173	+		GFF6761	0.58	-0.7
8,173	+		GFF6761	0.58	+1.6
8,173	+		GFF6761	0.58	-0.0
8,174	-		GFF6761	0.58	-0.1
8,174	-		GFF6761	0.58	+0.2
8,389	+		GFF6761	0.71	-0.2
8,389	+		GFF6761	0.71	-0.4
8,389	+		GFF6761	0.71	-0.7
8,389	+		GFF6761	0.71	+0.5
8,389	+		GFF6761	0.71	-1.0
8,389	+		GFF6761	0.71	-0.4
8,389	+		GFF6761	0.71	+1.2
8,389	+		GFF6761	0.71	-0.1
8,389	+		GFF6761	0.71	-0.4
8,389	+		GFF6761	0.71	-0.0
8,389	+		GFF6761	0.71	-1.4
8,390	-		GFF6761	0.71	+0.4
8,390	-		GFF6761	0.71	+1.0
8,390	-		GFF6761	0.71	+0.2
8,390	-		GFF6761	0.71	-1.4
8,390	-		GFF6761	0.71	+1.6
8,390	-		GFF6761	0.71	+0.0
8,390	-		GFF6761	0.71	-0.4
8,390	-		GFF6761	0.71	-0.4
8,391	-		GFF6761	0.71	-0.2
8,395	+		GFF6761	0.71	+0.2
8,395	+		GFF6761	0.71	-1.0
8,395	+		GFF6761	0.71	-0.2
8,396	-		GFF6761	0.71	+0.3
8,396	-		GFF6761	0.71	+0.0
8,401	+		GFF6761	0.71	+0.0
8,401	+		GFF6761	0.71	-0.1
8,539	+		GFF6761	0.80	+0.0
8,557	+		GFF6761	0.81	+0.2
8,557	+		GFF6761	0.81	+0.9
8,557	+		GFF6761	0.81	-0.1
8,557	+		GFF6761	0.81	+0.2
8,557	+		GFF6761	0.81	-0.3
8,557	+		GFF6761	0.81	+0.1
8,557	+		GFF6761	0.81	-0.3
8,557	+		GFF6761	0.81	-0.3
8,557	+		GFF6761	0.81	-0.9
8,557	+		GFF6761	0.81	-0.6
8,557	+		GFF6761	0.81	+0.4
8,558	-		GFF6761	0.81	-1.0
8,558	-		GFF6761	0.81	+0.8
8,558	-		GFF6761	0.81	+0.2
8,558	-		GFF6761	0.81	-0.1
8,558	-		GFF6761	0.81	+0.1
8,558	-		GFF6761	0.81	-0.5
8,558	-		GFF6761	0.81	-0.4
8,558	-		GFF6761	0.81	+0.8
8,558	-		GFF6761	0.81	+0.7
8,558	-		GFF6761	0.81	+0.3
8,558	-		GFF6761	0.81	-0.7
8,558	-		GFF6761	0.81	+0.4
8,558	-		GFF6761	0.81	-0.1
9,026	+				-0.4
9,026	+				-0.9
9,027	-				+0.4
9,075	-				+0.9
9,075	-				-0.8
9,176	+		GFF6762	0.14	+0.1
9,176	+		GFF6762	0.14	+0.0
9,176	+		GFF6762	0.14	+0.0
9,176	+		GFF6762	0.14	+0.1
9,176	+		GFF6762	0.14	+0.2
9,176	+		GFF6762	0.14	+0.0
9,177	-		GFF6762	0.14	-0.2
9,177	-		GFF6762	0.14	+1.4
9,177	-		GFF6762	0.14	-0.2
9,191	+		GFF6762	0.16	-0.6
9,191	+		GFF6762	0.16	+0.2
9,401	+		GFF6762	0.35	+1.0
9,401	+		GFF6762	0.35	-1.5
9,401	+		GFF6762	0.35	+0.4
9,401	+		GFF6762	0.35	+1.0
9,402	-		GFF6762	0.35	-0.5
9,402	-		GFF6762	0.35	+0.6
9,402	-		GFF6762	0.35	+0.5
9,402	-		GFF6762	0.35	-0.4
9,402	-		GFF6762	0.35	+0.2
9,402	-		GFF6762	0.35	-0.9
9,402	-		GFF6762	0.35	-0.3
9,402	-		GFF6762	0.35	-0.3
9,404	+		GFF6762	0.36	+0.0
9,404	+		GFF6762	0.36	-2.2
9,404	+		GFF6762	0.36	-0.1
9,404	+		GFF6762	0.36	+0.2
9,405	-		GFF6762	0.36	+0.3
9,405	-		GFF6762	0.36	+0.7
9,572	+		GFF6762	0.52	-0.0
9,572	+		GFF6762	0.52	-1.0
9,572	+		GFF6762	0.52	+0.0
9,572	+		GFF6762	0.52	+0.0
9,573	-		GFF6762	0.52	+0.8
9,573	-		GFF6762	0.52	-0.6
9,573	-		GFF6762	0.52	+1.6
9,611	+		GFF6762	0.55	-1.1
9,611	+		GFF6762	0.55	-0.8
9,611	+		GFF6762	0.55	-0.2
9,611	+		GFF6762	0.55	-0.7
9,611	+		GFF6762	0.55	-0.2
9,611	+		GFF6762	0.55	+0.4
9,611	+		GFF6762	0.55	-1.3
9,612	-		GFF6762	0.55	+0.0
9,612	-		GFF6762	0.55	-0.6
9,612	-		GFF6762	0.55	+0.0
9,612	-		GFF6762	0.55	-0.1
9,612	-		GFF6762	0.55	+0.1
9,612	-		GFF6762	0.55	+0.7
9,612	-		GFF6762	0.55	+0.1
9,612	-		GFF6762	0.55	+0.2
9,612	-		GFF6762	0.55	-0.3
9,612	-		GFF6762	0.55	-0.4
9,612	-		GFF6762	0.55	+0.0
9,636	-		GFF6762	0.58	-0.4
9,968	+		GFF6762	0.89	-0.9
9,968	+		GFF6762	0.89	-0.9
9,969	-		GFF6762	0.89	+0.4
10,112	+				+0.1
10,112	+				+0.5
10,112	+				-1.0
10,112	+				-0.2
10,112	+				-0.2
10,112	+				+0.1
10,113	-				-0.1
10,113	-				-0.5
10,113	-				-0.2
10,113	-				+0.0
10,113	-				-0.4
10,113	-				-0.2
10,116	+				+0.3
10,116	+				-0.7
10,117	-				-1.3
10,117	-				-0.6
10,192	+				-1.3
10,192	+				+0.0
10,192	+				-0.6
10,193	-				-0.1
10,193	-				-0.5
10,193	-				+0.7
10,207	+				+0.4
10,207	+				+0.2
10,208	-				-0.3
10,208	-				-2.4
10,208	-				-0.3
10,208	-				+0.6
10,295	+				+0.0
10,295	+				+0.4
10,296	-				+0.5
10,296	-				-0.7
10,296	-				+0.2
10,296	-				-1.3
10,316	+		GFF6763	0.13	-0.3
10,316	+		GFF6763	0.13	+1.2
10,316	+		GFF6763	0.13	-1.8
10,316	+		GFF6763	0.13	-1.2
10,317	-		GFF6763	0.13	+0.4
10,317	-		GFF6763	0.13	+0.9
10,412	+		GFF6763	0.31	+0.2
10,412	+		GFF6763	0.31	-0.0
10,412	+		GFF6763	0.31	-1.4
10,412	+		GFF6763	0.31	-1.4
10,412	+		GFF6763	0.31	+0.3
10,412	+		GFF6763	0.31	-0.2
10,412	+		GFF6763	0.31	-1.0
10,412	+		GFF6763	0.31	-1.2
10,412	+		GFF6763	0.31	+0.0
10,413	-		GFF6763	0.31	-0.4
10,413	-		GFF6763	0.31	+1.0
10,413	-		GFF6763	0.31	+0.4
10,413	-		GFF6763	0.31	+0.3
10,413	-		GFF6763	0.31	-0.6
10,413	-		GFF6763	0.31	-0.4
10,413	-		GFF6763	0.31	-0.4
10,439	+		GFF6763	0.36	-0.2
10,439	+		GFF6763	0.36	+1.6
10,440	-		GFF6763	0.36	-0.2
10,440	-		GFF6763	0.36	+0.3
10,440	-		GFF6763	0.36	-1.1
10,440	-		GFF6763	0.36	+0.5
10,440	-		GFF6763	0.36	+0.5
10,440	-		GFF6763	0.36	+0.2
10,440	-		GFF6763	0.36	+0.0
10,440	-		GFF6763	0.36	-0.2
10,440	-		GFF6763	0.36	+0.6
10,942	+		GFF6764	0.16	-0.2
10,943	-		GFF6764	0.17	-0.1
10,984	+		GFF6764	0.26	+0.9
10,984	+		GFF6764	0.26	+0.6
10,984	+		GFF6764	0.26	-0.2