Strain Fitness in Variovorax sp. SCN45 around GFF6721

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6720 and GFF6721 overlap by 4 nucleotidesGFF6721 and GFF6722 are separated by 139 nucleotides GFF6720 - no description, at 29,505 to 30,554 GFF6720 GFF6721 - Transcriptional regulator, LysR family, at 30,551 to 31,486 GFF6721 GFF6722 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 31,626 to 32,522 GFF6722 Position (kb) 30 31 32Strain fitness (log2 ratio) -1 0 1 2at 29.700 kb on + strand, within GFF6720at 29.701 kb on - strand, within GFF6720at 29.703 kb on + strand, within GFF6720at 29.919 kb on + strand, within GFF6720at 29.919 kb on + strand, within GFF6720at 29.920 kb on - strand, within GFF6720at 29.920 kb on - strand, within GFF6720at 29.920 kb on - strand, within GFF6720at 30.021 kb on + strand, within GFF6720at 30.021 kb on + strand, within GFF6720at 30.021 kb on + strand, within GFF6720at 30.022 kb on - strand, within GFF6720at 30.175 kb on - strand, within GFF6720at 30.175 kb on - strand, within GFF6720at 30.175 kb on - strand, within GFF6720at 30.175 kb on - strand, within GFF6720at 30.175 kb on - strand, within GFF6720at 30.302 kb on - strand, within GFF6720at 30.302 kb on - strand, within GFF6720at 30.690 kb on + strand, within GFF6721at 30.690 kb on + strand, within GFF6721at 30.690 kb on + strand, within GFF6721at 30.691 kb on - strand, within GFF6721at 30.691 kb on - strand, within GFF6721at 30.691 kb on - strand, within GFF6721at 30.691 kb on - strand, within GFF6721at 30.691 kb on - strand, within GFF6721at 30.777 kb on + strand, within GFF6721at 30.777 kb on + strand, within GFF6721at 30.777 kb on + strand, within GFF6721at 30.778 kb on - strand, within GFF6721at 30.882 kb on + strand, within GFF6721at 30.882 kb on + strand, within GFF6721at 31.130 kb on + strand, within GFF6721at 31.131 kb on - strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.293 kb on + strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.294 kb on - strand, within GFF6721at 31.459 kb on - strandat 31.518 kb on - strandat 31.776 kb on + strand, within GFF6722at 31.776 kb on + strand, within GFF6722at 31.885 kb on - strand, within GFF6722at 32.220 kb on + strand, within GFF6722at 32.221 kb on - strand, within GFF6722at 32.221 kb on - strand, within GFF6722at 32.280 kb on + strand, within GFF6722at 32.280 kb on + strand, within GFF6722at 32.412 kb on + strand, within GFF6722at 32.412 kb on + strand, within GFF6722at 32.412 kb on + strand, within GFF6722at 32.412 kb on + strand, within GFF6722at 32.413 kb on - strand, within GFF6722

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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29,700 + GFF6720 0.19 -0.5
29,701 - GFF6720 0.19 -0.2
29,703 + GFF6720 0.19 -0.3
29,919 + GFF6720 0.39 -0.6
29,919 + GFF6720 0.39 +0.0
29,920 - GFF6720 0.40 -1.0
29,920 - GFF6720 0.40 +0.8
29,920 - GFF6720 0.40 +0.6
30,021 + GFF6720 0.49 +0.1
30,021 + GFF6720 0.49 +0.1
30,021 + GFF6720 0.49 -0.3
30,022 - GFF6720 0.49 +0.9
30,175 - GFF6720 0.64 -0.3
30,175 - GFF6720 0.64 +0.1
30,175 - GFF6720 0.64 +0.5
30,175 - GFF6720 0.64 -0.5
30,175 - GFF6720 0.64 +1.1
30,302 - GFF6720 0.76 -0.0
30,302 - GFF6720 0.76 +0.9
30,690 + GFF6721 0.15 -0.5
30,690 + GFF6721 0.15 +1.2
30,690 + GFF6721 0.15 -0.2
30,691 - GFF6721 0.15 +0.4
30,691 - GFF6721 0.15 -1.0
30,691 - GFF6721 0.15 -0.5
30,691 - GFF6721 0.15 -0.0
30,691 - GFF6721 0.15 -0.8
30,777 + GFF6721 0.24 +0.4
30,777 + GFF6721 0.24 +0.1
30,777 + GFF6721 0.24 +0.1
30,778 - GFF6721 0.24 +0.1
30,882 + GFF6721 0.35 +0.3
30,882 + GFF6721 0.35 -0.2
31,130 + GFF6721 0.62 -0.2
31,131 - GFF6721 0.62 -0.0
31,293 + GFF6721 0.79 -1.2
31,293 + GFF6721 0.79 +2.1
31,293 + GFF6721 0.79 -0.2
31,293 + GFF6721 0.79 -0.3
31,293 + GFF6721 0.79 -0.5
31,293 + GFF6721 0.79 -0.3
31,293 + GFF6721 0.79 -0.2
31,293 + GFF6721 0.79 +0.5
31,293 + GFF6721 0.79 -0.5
31,293 + GFF6721 0.79 -0.1
31,293 + GFF6721 0.79 -0.5
31,293 + GFF6721 0.79 +0.6
31,294 - GFF6721 0.79 +0.6
31,294 - GFF6721 0.79 +0.6
31,294 - GFF6721 0.79 -0.5
31,294 - GFF6721 0.79 -1.3
31,294 - GFF6721 0.79 -1.3
31,294 - GFF6721 0.79 -1.3
31,294 - GFF6721 0.79 -1.4
31,294 - GFF6721 0.79 -1.0
31,294 - GFF6721 0.79 +0.1
31,294 - GFF6721 0.79 +0.3
31,294 - GFF6721 0.79 -0.0
31,294 - GFF6721 0.79 -1.3
31,294 - GFF6721 0.79 -0.3
31,294 - GFF6721 0.79 -0.6
31,294 - GFF6721 0.79 +0.7
31,294 - GFF6721 0.79 +1.2
31,294 - GFF6721 0.79 -1.2
31,459 - +0.1
31,518 - +0.2
31,776 + GFF6722 0.17 -1.1
31,776 + GFF6722 0.17 -0.2
31,885 - GFF6722 0.29 -0.5
32,220 + GFF6722 0.66 +0.7
32,221 - GFF6722 0.66 -1.3
32,221 - GFF6722 0.66 -0.2
32,280 + GFF6722 0.73 +0.3
32,280 + GFF6722 0.73 +0.6
32,412 + GFF6722 0.88 -0.1
32,412 + GFF6722 0.88 -0.8
32,412 + GFF6722 0.88 -0.6
32,412 + GFF6722 0.88 -0.4
32,413 - GFF6722 0.88 +1.1

Or see this region's nucleotide sequence