Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6706 and GFF6707 are separated by 0 nucleotides GFF6707 and GFF6708 are separated by 195 nucleotides GFF6708 and GFF6709 are separated by 19 nucleotides
GFF6706 - ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92), at 14,350 to 14,976
GFF6706
GFF6707 - RidA/YER057c/UK114 superfamily protein, at 14,977 to 15,366
GFF6707
GFF6708 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 15,562 to 17,142
GFF6708
GFF6709 - Putative hemagglutinin-related protein, at 17,162 to 18,418
GFF6709
Position (kb) 15
16
17
18 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 14.859 kb on + strand, within GFF6706 at 14.860 kb on - strand, within GFF6706 at 14.993 kb on + strand at 14.993 kb on + strand at 14.993 kb on + strand at 14.993 kb on + strand at 14.994 kb on - strand at 14.994 kb on - strand at 14.994 kb on - strand at 15.077 kb on + strand, within GFF6707 at 15.077 kb on + strand, within GFF6707 at 15.077 kb on + strand, within GFF6707 at 15.078 kb on - strand, within GFF6707 at 15.078 kb on - strand, within GFF6707 at 15.078 kb on - strand, within GFF6707 at 15.078 kb on - strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.276 kb on - strand, within GFF6707 at 15.276 kb on - strand, within GFF6707 at 15.276 kb on - strand, within GFF6707 at 15.276 kb on - strand, within GFF6707 at 15.353 kb on + strand at 15.353 kb on + strand at 15.354 kb on - strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.787 kb on + strand, within GFF6708 at 15.788 kb on - strand, within GFF6708 at 15.788 kb on - strand, within GFF6708 at 15.799 kb on + strand, within GFF6708 at 15.799 kb on + strand, within GFF6708 at 15.799 kb on + strand, within GFF6708 at 15.799 kb on + strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.877 kb on + strand, within GFF6708 at 15.877 kb on + strand, within GFF6708 at 15.877 kb on + strand, within GFF6708 at 15.878 kb on - strand, within GFF6708 at 15.878 kb on - strand, within GFF6708 at 15.878 kb on - strand, within GFF6708 at 16.060 kb on + strand, within GFF6708 at 16.061 kb on - strand, within GFF6708 at 16.165 kb on + strand, within GFF6708 at 16.166 kb on - strand, within GFF6708 at 16.166 kb on - strand, within GFF6708 at 16.222 kb on + strand, within GFF6708 at 16.222 kb on + strand, within GFF6708 at 16.223 kb on - strand, within GFF6708 at 16.223 kb on - strand, within GFF6708 at 16.223 kb on - strand, within GFF6708 at 16.223 kb on - strand, within GFF6708 at 16.223 kb on - strand, within GFF6708 at 16.627 kb on + strand, within GFF6708 at 16.628 kb on - strand, within GFF6708 at 16.628 kb on - strand, within GFF6708 at 16.628 kb on - strand, within GFF6708 at 16.628 kb on - strand, within GFF6708 at 16.678 kb on + strand, within GFF6708 at 16.718 kb on - strand, within GFF6708 at 16.729 kb on + strand, within GFF6708 at 16.729 kb on + strand, within GFF6708 at 16.729 kb on + strand, within GFF6708 at 16.730 kb on - strand, within GFF6708 at 16.730 kb on - strand, within GFF6708 at 16.730 kb on - strand, within GFF6708 at 16.849 kb on + strand, within GFF6708 at 16.849 kb on + strand, within GFF6708 at 16.849 kb on + strand, within GFF6708 at 17.024 kb on - strand at 17.024 kb on - strand at 17.038 kb on + strand at 17.038 kb on + strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.095 kb on + strand at 17.095 kb on + strand at 17.095 kb on + strand at 17.095 kb on + strand at 17.095 kb on + strand at 17.095 kb on + strand at 17.095 kb on + strand at 17.095 kb on + strand at 17.096 kb on - strand at 17.096 kb on - strand at 17.096 kb on - strand at 17.096 kb on - strand at 17.096 kb on - strand at 17.140 kb on + strand at 17.140 kb on + strand at 17.141 kb on - strand at 17.141 kb on - strand at 17.141 kb on - strand at 17.237 kb on - strand at 17.268 kb on - strand at 17.273 kb on + strand at 17.273 kb on + strand at 17.273 kb on + strand at 17.274 kb on - strand at 17.285 kb on + strand at 17.286 kb on - strand at 17.471 kb on + strand, within GFF6709 at 17.472 kb on - strand, within GFF6709 at 17.579 kb on + strand, within GFF6709 at 17.580 kb on - strand, within GFF6709 at 17.580 kb on - strand, within GFF6709 at 17.580 kb on - strand, within GFF6709 at 17.580 kb on - strand, within GFF6709 at 17.624 kb on + strand, within GFF6709 at 17.624 kb on + strand, within GFF6709 at 17.624 kb on + strand, within GFF6709 at 17.624 kb on + strand, within GFF6709 at 17.625 kb on - strand, within GFF6709 at 17.625 kb on - strand, within GFF6709 at 17.699 kb on + strand, within GFF6709 at 17.996 kb on + strand, within GFF6709 at 17.996 kb on + strand, within GFF6709 at 17.996 kb on + strand, within GFF6709 at 17.997 kb on - strand, within GFF6709 at 18.038 kb on + strand, within GFF6709 at 18.113 kb on + strand, within GFF6709 at 18.114 kb on - strand, within GFF6709 at 18.114 kb on - strand, within GFF6709 at 18.114 kb on - strand, within GFF6709
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 14,859 + GFF6706 0.81 -0.5 14,860 - GFF6706 0.81 -1.2 14,993 + -0.2 14,993 + -0.1 14,993 + -0.0 14,993 + -0.1 14,994 - -1.0 14,994 - -1.1 14,994 - -0.4 15,077 + GFF6707 0.26 +0.8 15,077 + GFF6707 0.26 -0.9 15,077 + GFF6707 0.26 -0.7 15,078 - GFF6707 0.26 -0.3 15,078 - GFF6707 0.26 -0.1 15,078 - GFF6707 0.26 -0.7 15,078 - GFF6707 0.26 +1.1 15,086 + GFF6707 0.28 +0.4 15,086 + GFF6707 0.28 +0.1 15,086 + GFF6707 0.28 -0.6 15,086 + GFF6707 0.28 -0.4 15,086 + GFF6707 0.28 +0.2 15,086 + GFF6707 0.28 -0.3 15,086 + GFF6707 0.28 +0.1 15,086 + GFF6707 0.28 +0.7 15,086 + GFF6707 0.28 +0.1 15,087 - GFF6707 0.28 +0.6 15,087 - GFF6707 0.28 -0.1 15,087 - GFF6707 0.28 -0.1 15,087 - GFF6707 0.28 +1.5 15,087 - GFF6707 0.28 -0.5 15,087 - GFF6707 0.28 -0.9 15,087 - GFF6707 0.28 -1.2 15,087 - GFF6707 0.28 -0.6 15,087 - GFF6707 0.28 -0.5 15,087 - GFF6707 0.28 -0.1 15,087 - GFF6707 0.28 -0.1 15,087 - GFF6707 0.28 -1.0 15,087 - GFF6707 0.28 -1.3 15,087 - GFF6707 0.28 -0.7 15,087 - GFF6707 0.28 +0.2 15,275 + GFF6707 0.76 -1.0 15,275 + GFF6707 0.76 +1.6 15,275 + GFF6707 0.76 -1.4 15,275 + GFF6707 0.76 -1.0 15,275 + GFF6707 0.76 -0.9 15,275 + GFF6707 0.76 +0.3 15,275 + GFF6707 0.76 +1.5 15,276 - GFF6707 0.77 +0.4 15,276 - GFF6707 0.77 -1.6 15,276 - GFF6707 0.77 -0.3 15,276 - GFF6707 0.77 +0.2 15,353 + -0.5 15,353 + +0.5 15,354 - -1.9 15,491 + +1.8 15,491 + -0.9 15,491 + -1.1 15,491 + -0.2 15,491 + -0.0 15,491 + -0.5 15,491 + -1.2 15,491 + +0.9 15,491 + +0.1 15,491 + +0.6 15,491 + -0.0 15,491 + -0.7 15,491 + +0.2 15,491 + +0.0 15,491 + -0.3 15,492 - -0.8 15,492 - -0.7 15,492 - +0.8 15,492 - -0.3 15,492 - +0.5 15,492 - -1.6 15,492 - -0.5 15,492 - +1.4 15,492 - -0.1 15,492 - +0.2 15,492 - -0.2 15,492 - +0.1 15,492 - +0.4 15,492 - +0.5 15,492 - +0.2 15,492 - -0.5 15,492 - -0.3 15,492 - +0.4 15,492 - +0.5 15,787 + GFF6708 0.14 -0.4 15,788 - GFF6708 0.14 -0.2 15,788 - GFF6708 0.14 -0.3 15,799 + GFF6708 0.15 +0.9 15,799 + GFF6708 0.15 -1.4 15,799 + GFF6708 0.15 -0.8 15,799 + GFF6708 0.15 -0.3 15,800 - GFF6708 0.15 -0.1 15,800 - GFF6708 0.15 -1.7 15,800 - GFF6708 0.15 -0.2 15,800 - GFF6708 0.15 -0.2 15,800 - GFF6708 0.15 +0.1 15,800 - GFF6708 0.15 -1.4 15,800 - GFF6708 0.15 -1.2 15,877 + GFF6708 0.20 -1.1 15,877 + GFF6708 0.20 -0.4 15,877 + GFF6708 0.20 -0.1 15,878 - GFF6708 0.20 -0.4 15,878 - GFF6708 0.20 -0.9 15,878 - GFF6708 0.20 +1.8 16,060 + GFF6708 0.31 -0.7 16,061 - GFF6708 0.32 -0.6 16,165 + GFF6708 0.38 -0.8 16,166 - GFF6708 0.38 +0.8 16,166 - GFF6708 0.38 +0.8 16,222 + GFF6708 0.42 +0.3 16,222 + GFF6708 0.42 +0.2 16,223 - GFF6708 0.42 -1.3 16,223 - GFF6708 0.42 -0.7 16,223 - GFF6708 0.42 -1.0 16,223 - GFF6708 0.42 +0.8 16,223 - GFF6708 0.42 -0.9 16,627 + GFF6708 0.67 -1.0 16,628 - GFF6708 0.67 -1.5 16,628 - GFF6708 0.67 +0.2 16,628 - GFF6708 0.67 -0.2 16,628 - GFF6708 0.67 +0.1 16,678 + GFF6708 0.71 +0.4 16,718 - GFF6708 0.73 +0.1 16,729 + GFF6708 0.74 -0.5 16,729 + GFF6708 0.74 -0.3 16,729 + GFF6708 0.74 -2.1 16,730 - GFF6708 0.74 -0.5 16,730 - GFF6708 0.74 -0.1 16,730 - GFF6708 0.74 -0.1 16,849 + GFF6708 0.81 -0.6 16,849 + GFF6708 0.81 -2.8 16,849 + GFF6708 0.81 -0.4 17,024 - +0.1 17,024 - +0.5 17,038 + -0.2 17,038 + +0.5 17,039 - -0.3 17,039 - -0.4 17,039 - +1.0 17,039 - +0.1 17,039 - +0.4 17,039 - +0.1 17,039 - +1.5 17,039 - +0.2 17,039 - -1.5 17,039 - +0.6 17,039 - -0.5 17,095 + -1.4 17,095 + -0.6 17,095 + -1.0 17,095 + -0.3 17,095 + -0.2 17,095 + -0.2 17,095 + -0.9 17,095 + -0.9 17,096 - -0.1 17,096 - +0.0 17,096 - -1.1 17,096 - +0.7 17,096 - +0.4 17,140 + +0.1 17,140 + -1.3 17,141 - +0.9 17,141 - -0.3 17,141 - -0.8 17,237 - -1.3 17,268 - -0.3 17,273 + -1.0 17,273 + +0.4 17,273 + -1.3 17,274 - +0.2 17,285 + -0.6 17,286 - +0.8 17,471 + GFF6709 0.25 +0.0 17,472 - GFF6709 0.25 -1.3 17,579 + GFF6709 0.33 +0.5 17,580 - GFF6709 0.33 -1.1 17,580 - GFF6709 0.33 +0.8 17,580 - GFF6709 0.33 -0.9 17,580 - GFF6709 0.33 -1.0 17,624 + GFF6709 0.37 -0.5 17,624 + GFF6709 0.37 +0.4 17,624 + GFF6709 0.37 +1.1 17,624 + GFF6709 0.37 +0.0 17,625 - GFF6709 0.37 +0.0 17,625 - GFF6709 0.37 -0.4 17,699 + GFF6709 0.43 -0.9 17,996 + GFF6709 0.66 -1.0 17,996 + GFF6709 0.66 +0.1 17,996 + GFF6709 0.66 +1.3 17,997 - GFF6709 0.66 -0.7 18,038 + GFF6709 0.70 -0.7 18,113 + GFF6709 0.76 -0.1 18,114 - GFF6709 0.76 +0.8 18,114 - GFF6709 0.76 +2.2 18,114 - GFF6709 0.76 -0.8
Or see this region's nucleotide sequence