Strain Fitness in Variovorax sp. SCN45 around GFF6674

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6671 and GFF6672 overlap by 4 nucleotidesGFF6672 and GFF6673 are separated by 221 nucleotidesGFF6673 and GFF6674 are separated by 13 nucleotidesGFF6674 and GFF6675 are separated by 16 nucleotides GFF6671 - Membrane proteins related to metalloendopeptidases, at 47,398 to 48,318 GFF6671 GFF6672 - no description, at 48,315 to 48,473 GFF6672 GFF6673 - Membrane protein, at 48,695 to 49,264 GFF6673 GFF6674 - Predicted membrane protein, at 49,278 to 49,682 GFF6674 GFF6675 - ortholog of Bordetella pertussis (BX470248) BP3300, at 49,699 to 50,634 GFF6675 Position (kb) 49 50Strain fitness (log2 ratio) -2 -1 0 1 2at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.336 kb on + strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.337 kb on - strand, within GFF6672at 48.584 kb on + strandat 48.584 kb on + strandat 48.584 kb on + strandat 48.584 kb on + strandat 48.585 kb on - strandat 48.585 kb on - strandat 48.585 kb on - strandat 48.585 kb on - strandat 48.670 kb on + strandat 48.670 kb on + strandat 48.670 kb on + strandat 48.671 kb on - strandat 48.671 kb on - strandat 48.671 kb on - strandat 48.671 kb on - strandat 48.671 kb on - strandat 48.756 kb on + strand, within GFF6673at 48.757 kb on - strand, within GFF6673at 48.757 kb on - strand, within GFF6673at 48.757 kb on - strand, within GFF6673at 48.770 kb on + strand, within GFF6673at 48.771 kb on - strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.965 kb on + strand, within GFF6673at 48.966 kb on - strand, within GFF6673at 48.966 kb on - strand, within GFF6673at 48.966 kb on - strand, within GFF6673at 48.966 kb on - strand, within GFF6673at 48.966 kb on - strand, within GFF6673at 48.966 kb on - strand, within GFF6673at 49.106 kb on + strand, within GFF6673at 49.106 kb on + strand, within GFF6673at 49.106 kb on + strand, within GFF6673at 49.106 kb on + strand, within GFF6673at 49.106 kb on + strand, within GFF6673at 49.107 kb on - strand, within GFF6673at 49.107 kb on - strand, within GFF6673at 49.107 kb on - strand, within GFF6673at 49.107 kb on - strand, within GFF6673at 49.107 kb on - strand, within GFF6673at 49.107 kb on - strand, within GFF6673at 49.107 kb on - strand, within GFF6673at 49.118 kb on + strand, within GFF6673at 49.118 kb on + strand, within GFF6673at 49.118 kb on + strand, within GFF6673at 49.208 kb on + strandat 49.208 kb on + strandat 49.208 kb on + strandat 49.209 kb on - strandat 49.209 kb on - strandat 49.262 kb on + strandat 49.262 kb on + strandat 49.262 kb on + strandat 49.263 kb on - strandat 49.263 kb on - strandat 49.307 kb on + strandat 49.308 kb on - strandat 49.369 kb on + strand, within GFF6674at 49.369 kb on + strand, within GFF6674at 49.369 kb on + strand, within GFF6674at 49.369 kb on + strand, within GFF6674at 49.370 kb on - strand, within GFF6674at 49.370 kb on - strand, within GFF6674at 49.370 kb on - strand, within GFF6674at 49.408 kb on + strand, within GFF6674at 49.408 kb on + strand, within GFF6674at 49.408 kb on + strand, within GFF6674at 49.408 kb on + strand, within GFF6674at 49.408 kb on + strand, within GFF6674at 49.408 kb on + strand, within GFF6674at 49.408 kb on + strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.409 kb on - strand, within GFF6674at 49.718 kb on + strandat 49.718 kb on + strandat 49.718 kb on + strandat 49.718 kb on + strandat 49.718 kb on + strandat 49.718 kb on + strandat 49.718 kb on + strandat 49.718 kb on + strandat 49.718 kb on + strandat 49.718 kb on + strandat 49.718 kb on + strandat 49.718 kb on + strandat 49.719 kb on - strandat 49.719 kb on - strandat 49.719 kb on - strandat 49.719 kb on - strandat 49.719 kb on - strandat 49.889 kb on + strand, within GFF6675at 49.889 kb on + strand, within GFF6675at 49.889 kb on + strand, within GFF6675at 49.889 kb on + strand, within GFF6675at 49.889 kb on + strand, within GFF6675at 49.889 kb on + strand, within GFF6675at 49.889 kb on + strand, within GFF6675at 49.889 kb on + strand, within GFF6675at 49.889 kb on + strand, within GFF6675at 49.889 kb on + strand, within GFF6675at 49.889 kb on + strand, within GFF6675at 49.889 kb on + strand, within GFF6675at 49.889 kb on + strand, within GFF6675at 49.889 kb on + strand, within GFF6675at 49.889 kb on + strand, within GFF6675at 49.890 kb on - strand, within GFF6675at 49.890 kb on - strand, within GFF6675at 49.890 kb on - strand, within GFF6675at 49.890 kb on - strand, within GFF6675at 49.890 kb on - strand, within GFF6675at 49.890 kb on - strand, within GFF6675at 49.890 kb on - strand, within GFF6675at 49.890 kb on - strand, within GFF6675at 49.890 kb on - strand, within GFF6675at 49.890 kb on - strand, within GFF6675at 49.890 kb on - strand, within GFF6675at 49.890 kb on - strand, within GFF6675at 49.890 kb on - strand, within GFF6675at 49.890 kb on - strand, within GFF6675at 49.890 kb on - strand, within GFF6675at 49.890 kb on - strand, within GFF6675at 49.965 kb on - strand, within GFF6675at 49.965 kb on - strand, within GFF6675at 49.965 kb on - strand, within GFF6675at 49.965 kb on - strand, within GFF6675at 49.965 kb on - strand, within GFF6675at 49.979 kb on + strand, within GFF6675at 49.979 kb on + strand, within GFF6675at 49.979 kb on + strand, within GFF6675at 49.979 kb on + strand, within GFF6675at 49.979 kb on + strand, within GFF6675at 49.980 kb on - strand, within GFF6675at 49.980 kb on - strand, within GFF6675at 49.980 kb on - strand, within GFF6675at 49.980 kb on - strand, within GFF6675at 49.980 kb on - strand, within GFF6675at 49.980 kb on - strand, within GFF6675at 50.081 kb on + strand, within GFF6675at 50.186 kb on + strand, within GFF6675at 50.186 kb on + strand, within GFF6675at 50.390 kb on + strand, within GFF6675at 50.390 kb on + strand, within GFF6675at 50.390 kb on + strand, within GFF6675at 50.391 kb on - strand, within GFF6675at 50.555 kb on + strandat 50.555 kb on + strandat 50.555 kb on + strandat 50.555 kb on + strandat 50.555 kb on + strandat 50.555 kb on + strandat 50.556 kb on + strandat 50.556 kb on - strandat 50.556 kb on - strandat 50.556 kb on - strandat 50.556 kb on - strandat 50.556 kb on - strandat 50.674 kb on + strandat 50.674 kb on + strandat 50.674 kb on + strandat 50.675 kb on - strandat 50.675 kb on - strandat 50.675 kb on - strandat 50.675 kb on - strandat 50.675 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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48,336 + GFF6672 0.13 +0.2
48,336 + GFF6672 0.13 +0.2
48,336 + GFF6672 0.13 +0.1
48,336 + GFF6672 0.13 -0.2
48,336 + GFF6672 0.13 -1.1
48,336 + GFF6672 0.13 +2.0
48,336 + GFF6672 0.13 +0.3
48,336 + GFF6672 0.13 +0.2
48,336 + GFF6672 0.13 +0.8
48,336 + GFF6672 0.13 -0.2
48,337 - GFF6672 0.14 -0.6
48,337 - GFF6672 0.14 +0.4
48,337 - GFF6672 0.14 -0.4
48,337 - GFF6672 0.14 -0.5
48,337 - GFF6672 0.14 -0.6
48,337 - GFF6672 0.14 -0.3
48,337 - GFF6672 0.14 +1.0
48,337 - GFF6672 0.14 -0.6
48,337 - GFF6672 0.14 -0.3
48,337 - GFF6672 0.14 +0.2
48,337 - GFF6672 0.14 +0.4
48,337 - GFF6672 0.14 +0.5
48,337 - GFF6672 0.14 -0.2
48,584 + -0.6
48,584 + +1.3
48,584 + -0.1
48,584 + +1.0
48,585 - -0.3
48,585 - -0.1
48,585 - -0.1
48,585 - -0.1
48,670 + -0.1
48,670 + -0.7
48,670 + +0.2
48,671 - -0.7
48,671 - -0.3
48,671 - +1.6
48,671 - -0.4
48,671 - -0.6
48,756 + GFF6673 0.11 -0.2
48,757 - GFF6673 0.11 +0.7
48,757 - GFF6673 0.11 +1.4
48,757 - GFF6673 0.11 -0.2
48,770 + GFF6673 0.13 -0.1
48,771 - GFF6673 0.13 -2.0
48,965 + GFF6673 0.47 -0.4
48,965 + GFF6673 0.47 +1.6
48,965 + GFF6673 0.47 -0.6
48,965 + GFF6673 0.47 +1.0
48,965 + GFF6673 0.47 +0.1
48,965 + GFF6673 0.47 -0.7
48,965 + GFF6673 0.47 -0.3
48,965 + GFF6673 0.47 +0.8
48,965 + GFF6673 0.47 -0.3
48,965 + GFF6673 0.47 +0.0
48,965 + GFF6673 0.47 +0.5
48,965 + GFF6673 0.47 -0.0
48,965 + GFF6673 0.47 +0.2
48,965 + GFF6673 0.47 -1.1
48,965 + GFF6673 0.47 -0.3
48,966 - GFF6673 0.48 -1.0
48,966 - GFF6673 0.48 +0.3
48,966 - GFF6673 0.48 -0.1
48,966 - GFF6673 0.48 -0.2
48,966 - GFF6673 0.48 -0.6
48,966 - GFF6673 0.48 -0.6
49,106 + GFF6673 0.72 -2.1
49,106 + GFF6673 0.72 -0.2
49,106 + GFF6673 0.72 -0.1
49,106 + GFF6673 0.72 +0.4
49,106 + GFF6673 0.72 -0.8
49,107 - GFF6673 0.72 -0.0
49,107 - GFF6673 0.72 -1.3
49,107 - GFF6673 0.72 +0.5
49,107 - GFF6673 0.72 +1.4
49,107 - GFF6673 0.72 +0.3
49,107 - GFF6673 0.72 -0.2
49,107 - GFF6673 0.72 -1.2
49,118 + GFF6673 0.74 +0.2
49,118 + GFF6673 0.74 +1.6
49,118 + GFF6673 0.74 +0.1
49,208 + -1.0
49,208 + -0.4
49,208 + -0.4
49,209 - +2.0
49,209 - +1.0
49,262 + -0.3
49,262 + +0.0
49,262 + -0.0
49,263 - +0.0
49,263 - -0.4
49,307 + -1.5
49,308 - +0.9
49,369 + GFF6674 0.22 -0.8
49,369 + GFF6674 0.22 -0.8
49,369 + GFF6674 0.22 -0.8
49,369 + GFF6674 0.22 -0.0
49,370 - GFF6674 0.23 -0.3
49,370 - GFF6674 0.23 -0.3
49,370 - GFF6674 0.23 -1.2
49,408 + GFF6674 0.32 +0.3
49,408 + GFF6674 0.32 -0.2
49,408 + GFF6674 0.32 +0.0
49,408 + GFF6674 0.32 +1.2
49,408 + GFF6674 0.32 -1.4
49,408 + GFF6674 0.32 -0.0
49,408 + GFF6674 0.32 -0.8
49,409 - GFF6674 0.32 -0.3
49,409 - GFF6674 0.32 -0.6
49,409 - GFF6674 0.32 +0.0
49,409 - GFF6674 0.32 -0.6
49,409 - GFF6674 0.32 -1.5
49,409 - GFF6674 0.32 +0.2
49,409 - GFF6674 0.32 -0.6
49,409 - GFF6674 0.32 -1.6
49,409 - GFF6674 0.32 -1.3
49,409 - GFF6674 0.32 +0.2
49,718 + +1.6
49,718 + -0.5
49,718 + +0.7
49,718 + -0.1
49,718 + +0.4
49,718 + +0.6
49,718 + -1.1
49,718 + +1.6
49,718 + -0.5
49,718 + -0.4
49,718 + +0.0
49,718 + +0.4
49,719 - -0.2
49,719 - -0.4
49,719 - +0.6
49,719 - -0.5
49,719 - -0.1
49,889 + GFF6675 0.20 +0.2
49,889 + GFF6675 0.20 -0.3
49,889 + GFF6675 0.20 -0.3
49,889 + GFF6675 0.20 -0.8
49,889 + GFF6675 0.20 +0.2
49,889 + GFF6675 0.20 -0.5
49,889 + GFF6675 0.20 -0.0
49,889 + GFF6675 0.20 -0.1
49,889 + GFF6675 0.20 -0.2
49,889 + GFF6675 0.20 +0.0
49,889 + GFF6675 0.20 +0.0
49,889 + GFF6675 0.20 -0.3
49,889 + GFF6675 0.20 +0.1
49,889 + GFF6675 0.20 -0.6
49,889 + GFF6675 0.20 +0.7
49,890 - GFF6675 0.20 -1.1
49,890 - GFF6675 0.20 -0.7
49,890 - GFF6675 0.20 +1.0
49,890 - GFF6675 0.20 -1.0
49,890 - GFF6675 0.20 -1.0
49,890 - GFF6675 0.20 +0.1
49,890 - GFF6675 0.20 +1.3
49,890 - GFF6675 0.20 +0.1
49,890 - GFF6675 0.20 +0.4
49,890 - GFF6675 0.20 -0.6
49,890 - GFF6675 0.20 +0.3
49,890 - GFF6675 0.20 +0.0
49,890 - GFF6675 0.20 -1.2
49,890 - GFF6675 0.20 +0.1
49,890 - GFF6675 0.20 +0.0
49,890 - GFF6675 0.20 -0.4
49,965 - GFF6675 0.28 -2.3
49,965 - GFF6675 0.28 -0.3
49,965 - GFF6675 0.28 -0.6
49,965 - GFF6675 0.28 -1.0
49,965 - GFF6675 0.28 +0.6
49,979 + GFF6675 0.30 +0.0
49,979 + GFF6675 0.30 -0.7
49,979 + GFF6675 0.30 -0.4
49,979 + GFF6675 0.30 -0.5
49,979 + GFF6675 0.30 -0.1
49,980 - GFF6675 0.30 -0.6
49,980 - GFF6675 0.30 -1.0
49,980 - GFF6675 0.30 -0.3
49,980 - GFF6675 0.30 +0.4
49,980 - GFF6675 0.30 -0.5
49,980 - GFF6675 0.30 -2.0
50,081 + GFF6675 0.41 -0.2
50,186 + GFF6675 0.52 +1.6
50,186 + GFF6675 0.52 +0.0
50,390 + GFF6675 0.74 -1.2
50,390 + GFF6675 0.74 -0.2
50,390 + GFF6675 0.74 +0.1
50,391 - GFF6675 0.74 +1.1
50,555 + -0.1
50,555 + -0.4
50,555 + -0.4
50,555 + -0.7
50,555 + -0.1
50,555 + +1.0
50,556 + -1.0
50,556 - +0.6
50,556 - -0.6
50,556 - +0.2
50,556 - -0.2
50,556 - -0.1
50,674 + -0.3
50,674 + -2.3
50,674 + +0.2
50,675 - -0.4
50,675 - -0.0
50,675 - +0.1
50,675 - -0.6
50,675 - +1.1

Or see this region's nucleotide sequence