Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6662 and GFF6663 are separated by 39 nucleotides GFF6663 and GFF6664 overlap by 4 nucleotides GFF6664 and GFF6665 are separated by 56 nucleotides
GFF6662 - hypothetical protein, at 40,224 to 40,745
GFF6662
GFF6663 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 40,785 to 41,741
GFF6663
GFF6664 - Putative transmembrane protein, at 41,738 to 42,037
GFF6664
GFF6665 - Autolysin sensor kinase (EC 2.7.3.-), at 42,094 to 43,107
GFF6665
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 40.743 kb on + strand at 40.743 kb on + strand at 40.743 kb on + strand at 40.744 kb on - strand at 40.746 kb on + strand at 40.746 kb on + strand at 40.746 kb on + strand at 40.747 kb on - strand at 40.747 kb on - strand at 40.747 kb on - strand at 40.887 kb on + strand, within GFF6663 at 40.887 kb on + strand, within GFF6663 at 40.887 kb on + strand, within GFF6663 at 40.887 kb on + strand, within GFF6663 at 40.887 kb on + strand, within GFF6663 at 40.888 kb on - strand, within GFF6663 at 40.888 kb on - strand, within GFF6663 at 40.888 kb on - strand, within GFF6663 at 40.888 kb on - strand, within GFF6663 at 40.995 kb on + strand, within GFF6663 at 40.995 kb on + strand, within GFF6663 at 40.995 kb on + strand, within GFF6663 at 40.995 kb on + strand, within GFF6663 at 40.995 kb on + strand, within GFF6663 at 40.995 kb on + strand, within GFF6663 at 40.996 kb on - strand, within GFF6663 at 40.996 kb on - strand, within GFF6663 at 40.996 kb on - strand, within GFF6663 at 40.996 kb on - strand, within GFF6663 at 40.996 kb on - strand, within GFF6663 at 40.996 kb on - strand, within GFF6663 at 40.996 kb on - strand, within GFF6663 at 41.073 kb on + strand, within GFF6663 at 41.073 kb on + strand, within GFF6663 at 41.073 kb on + strand, within GFF6663 at 41.073 kb on + strand, within GFF6663 at 41.073 kb on + strand, within GFF6663 at 41.074 kb on - strand, within GFF6663 at 41.074 kb on - strand, within GFF6663 at 41.074 kb on - strand, within GFF6663 at 41.074 kb on - strand, within GFF6663 at 41.074 kb on - strand, within GFF6663 at 41.074 kb on - strand, within GFF6663 at 41.074 kb on - strand, within GFF6663 at 41.076 kb on + strand, within GFF6663 at 41.076 kb on + strand, within GFF6663 at 41.076 kb on + strand, within GFF6663 at 41.076 kb on + strand, within GFF6663 at 41.076 kb on + strand, within GFF6663 at 41.076 kb on + strand, within GFF6663 at 41.076 kb on + strand, within GFF6663 at 41.077 kb on - strand, within GFF6663 at 41.077 kb on - strand, within GFF6663 at 41.077 kb on - strand, within GFF6663 at 41.077 kb on - strand, within GFF6663 at 41.077 kb on - strand, within GFF6663 at 41.077 kb on - strand, within GFF6663 at 41.082 kb on + strand, within GFF6663 at 41.082 kb on + strand, within GFF6663 at 41.082 kb on + strand, within GFF6663 at 41.083 kb on - strand, within GFF6663 at 41.283 kb on + strand, within GFF6663 at 41.283 kb on + strand, within GFF6663 at 41.283 kb on + strand, within GFF6663 at 41.284 kb on - strand, within GFF6663 at 41.284 kb on - strand, within GFF6663 at 41.284 kb on - strand, within GFF6663 at 41.388 kb on + strand, within GFF6663 at 41.403 kb on + strand, within GFF6663 at 41.404 kb on - strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.479 kb on - strand, within GFF6663 at 41.592 kb on + strand, within GFF6663 at 41.592 kb on + strand, within GFF6663 at 41.592 kb on + strand, within GFF6663 at 41.592 kb on + strand, within GFF6663 at 41.592 kb on + strand, within GFF6663 at 41.592 kb on + strand, within GFF6663 at 41.593 kb on - strand, within GFF6663 at 41.593 kb on - strand, within GFF6663 at 41.593 kb on - strand, within GFF6663 at 41.593 kb on - strand, within GFF6663 at 41.593 kb on - strand, within GFF6663 at 41.593 kb on - strand, within GFF6663 at 41.593 kb on - strand, within GFF6663 at 41.593 kb on - strand, within GFF6663 at 41.722 kb on - strand at 41.722 kb on - strand at 41.722 kb on - strand at 41.722 kb on - strand at 41.768 kb on + strand, within GFF6664 at 41.768 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.840 kb on + strand, within GFF6664 at 41.840 kb on + strand, within GFF6664 at 41.841 kb on - strand, within GFF6664 at 41.841 kb on - strand, within GFF6664 at 41.841 kb on - strand, within GFF6664 at 41.841 kb on - strand, within GFF6664 at 41.903 kb on + strand, within GFF6664 at 41.903 kb on + strand, within GFF6664 at 41.903 kb on + strand, within GFF6664 at 41.903 kb on + strand, within GFF6664 at 41.903 kb on + strand, within GFF6664 at 41.903 kb on + strand, within GFF6664 at 41.903 kb on + strand, within GFF6664 at 41.904 kb on - strand, within GFF6664 at 41.904 kb on - strand, within GFF6664 at 41.904 kb on - strand, within GFF6664 at 41.904 kb on - strand, within GFF6664 at 41.904 kb on - strand, within GFF6664 at 41.904 kb on - strand, within GFF6664 at 41.981 kb on + strand, within GFF6664 at 41.981 kb on + strand, within GFF6664 at 41.981 kb on + strand, within GFF6664 at 41.981 kb on + strand, within GFF6664 at 41.981 kb on + strand, within GFF6664 at 41.982 kb on - strand, within GFF6664 at 41.982 kb on - strand, within GFF6664 at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.461 kb on - strand, within GFF6665 at 42.461 kb on - strand, within GFF6665 at 42.461 kb on - strand, within GFF6665 at 42.461 kb on - strand, within GFF6665 at 42.652 kb on + strand, within GFF6665 at 42.652 kb on + strand, within GFF6665 at 42.652 kb on + strand, within GFF6665 at 42.652 kb on + strand, within GFF6665 at 42.652 kb on + strand, within GFF6665 at 42.652 kb on + strand, within GFF6665 at 42.653 kb on - strand, within GFF6665 at 42.653 kb on - strand, within GFF6665 at 42.653 kb on - strand, within GFF6665 at 42.653 kb on - strand, within GFF6665 at 42.653 kb on - strand, within GFF6665 at 42.653 kb on - strand, within GFF6665 at 42.727 kb on + strand, within GFF6665 at 42.728 kb on - strand, within GFF6665 at 42.728 kb on - strand, within GFF6665 at 42.728 kb on - strand, within GFF6665 at 42.728 kb on - strand, within GFF6665 at 42.769 kb on + strand, within GFF6665 at 42.769 kb on + strand, within GFF6665 at 42.769 kb on + strand, within GFF6665 at 42.769 kb on + strand, within GFF6665 at 42.770 kb on - strand, within GFF6665 at 42.770 kb on - strand, within GFF6665 at 42.770 kb on - strand, within GFF6665 at 42.770 kb on - strand, within GFF6665 at 43.024 kb on + strand at 43.024 kb on + strand at 43.024 kb on + strand at 43.024 kb on + strand at 43.024 kb on + strand at 43.024 kb on + strand at 43.024 kb on + strand at 43.024 kb on + strand at 43.025 kb on - strand at 43.025 kb on - strand at 43.025 kb on - strand at 43.025 kb on - strand at 43.025 kb on - strand at 43.025 kb on - strand at 43.025 kb on - strand at 43.025 kb on - strand at 43.025 kb on - strand at 43.025 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 40,743 + -1.2 40,743 + +0.3 40,743 + -0.4 40,744 - +0.7 40,746 + +0.0 40,746 + +0.0 40,746 + -0.9 40,747 - -0.3 40,747 - +0.6 40,747 - -1.4 40,887 + GFF6663 0.11 +0.7 40,887 + GFF6663 0.11 +0.2 40,887 + GFF6663 0.11 +0.5 40,887 + GFF6663 0.11 -1.6 40,887 + GFF6663 0.11 -0.3 40,888 - GFF6663 0.11 +0.0 40,888 - GFF6663 0.11 +1.5 40,888 - GFF6663 0.11 -0.5 40,888 - GFF6663 0.11 -0.4 40,995 + GFF6663 0.22 -0.5 40,995 + GFF6663 0.22 -0.7 40,995 + GFF6663 0.22 -0.3 40,995 + GFF6663 0.22 -1.4 40,995 + GFF6663 0.22 +0.4 40,995 + GFF6663 0.22 -0.3 40,996 - GFF6663 0.22 -0.4 40,996 - GFF6663 0.22 -1.6 40,996 - GFF6663 0.22 -2.1 40,996 - GFF6663 0.22 -1.0 40,996 - GFF6663 0.22 +0.2 40,996 - GFF6663 0.22 -0.4 40,996 - GFF6663 0.22 +1.0 41,073 + GFF6663 0.30 -1.7 41,073 + GFF6663 0.30 +0.0 41,073 + GFF6663 0.30 -0.5 41,073 + GFF6663 0.30 -0.3 41,073 + GFF6663 0.30 +0.0 41,074 - GFF6663 0.30 +1.6 41,074 - GFF6663 0.30 +0.0 41,074 - GFF6663 0.30 +0.6 41,074 - GFF6663 0.30 -0.1 41,074 - GFF6663 0.30 +1.6 41,074 - GFF6663 0.30 +0.2 41,074 - GFF6663 0.30 -1.6 41,076 + GFF6663 0.30 -0.8 41,076 + GFF6663 0.30 +0.5 41,076 + GFF6663 0.30 -0.3 41,076 + GFF6663 0.30 -0.6 41,076 + GFF6663 0.30 +0.3 41,076 + GFF6663 0.30 +0.1 41,076 + GFF6663 0.30 +0.9 41,077 - GFF6663 0.31 +1.4 41,077 - GFF6663 0.31 +0.7 41,077 - GFF6663 0.31 -0.0 41,077 - GFF6663 0.31 -1.0 41,077 - GFF6663 0.31 -1.1 41,077 - GFF6663 0.31 -1.4 41,082 + GFF6663 0.31 +0.2 41,082 + GFF6663 0.31 +0.6 41,082 + GFF6663 0.31 -1.2 41,083 - GFF6663 0.31 +0.3 41,283 + GFF6663 0.52 -0.7 41,283 + GFF6663 0.52 -0.6 41,283 + GFF6663 0.52 +0.0 41,284 - GFF6663 0.52 -0.1 41,284 - GFF6663 0.52 -0.1 41,284 - GFF6663 0.52 -0.8 41,388 + GFF6663 0.63 -0.3 41,403 + GFF6663 0.65 +0.3 41,404 - GFF6663 0.65 -0.4 41,445 + GFF6663 0.69 -0.4 41,445 + GFF6663 0.69 +0.0 41,445 + GFF6663 0.69 +1.0 41,445 + GFF6663 0.69 +0.3 41,445 + GFF6663 0.69 -0.9 41,445 + GFF6663 0.69 +0.0 41,445 + GFF6663 0.69 +1.2 41,445 + GFF6663 0.69 +0.0 41,445 + GFF6663 0.69 -1.2 41,445 + GFF6663 0.69 -0.5 41,445 + GFF6663 0.69 +0.0 41,445 + GFF6663 0.69 -0.6 41,445 + GFF6663 0.69 -0.5 41,445 + GFF6663 0.69 -2.2 41,445 + GFF6663 0.69 +0.1 41,445 + GFF6663 0.69 +1.6 41,445 + GFF6663 0.69 +0.4 41,446 - GFF6663 0.69 -1.8 41,446 - GFF6663 0.69 -1.4 41,446 - GFF6663 0.69 -0.9 41,446 - GFF6663 0.69 -0.6 41,446 - GFF6663 0.69 -0.6 41,446 - GFF6663 0.69 -0.6 41,446 - GFF6663 0.69 +0.6 41,446 - GFF6663 0.69 -0.7 41,446 - GFF6663 0.69 -0.6 41,446 - GFF6663 0.69 +0.6 41,446 - GFF6663 0.69 -0.2 41,446 - GFF6663 0.69 +0.6 41,479 - GFF6663 0.73 -1.0 41,592 + GFF6663 0.84 +0.7 41,592 + GFF6663 0.84 -0.9 41,592 + GFF6663 0.84 -0.3 41,592 + GFF6663 0.84 +0.2 41,592 + GFF6663 0.84 -0.9 41,592 + GFF6663 0.84 +0.8 41,593 - GFF6663 0.84 +0.6 41,593 - GFF6663 0.84 +0.4 41,593 - GFF6663 0.84 +2.0 41,593 - GFF6663 0.84 +0.5 41,593 - GFF6663 0.84 +0.9 41,593 - GFF6663 0.84 +0.6 41,593 - GFF6663 0.84 -0.4 41,593 - GFF6663 0.84 -0.4 41,722 - +0.7 41,722 - -0.3 41,722 - +0.0 41,722 - -0.0 41,768 + GFF6664 0.10 +4.2 41,768 + GFF6664 0.10 -0.8 41,822 + GFF6664 0.28 -0.5 41,822 + GFF6664 0.28 -0.6 41,822 + GFF6664 0.28 +0.5 41,822 + GFF6664 0.28 +1.6 41,822 + GFF6664 0.28 -0.2 41,822 + GFF6664 0.28 -0.9 41,822 + GFF6664 0.28 -1.3 41,822 + GFF6664 0.28 -0.4 41,822 + GFF6664 0.28 -0.4 41,823 - GFF6664 0.28 +0.7 41,823 - GFF6664 0.28 -0.3 41,823 - GFF6664 0.28 +1.1 41,823 - GFF6664 0.28 +0.2 41,823 - GFF6664 0.28 -0.1 41,823 - GFF6664 0.28 +1.6 41,823 - GFF6664 0.28 -0.0 41,823 - GFF6664 0.28 +1.4 41,823 - GFF6664 0.28 -1.1 41,823 - GFF6664 0.28 -0.2 41,823 - GFF6664 0.28 -0.8 41,823 - GFF6664 0.28 -1.1 41,823 - GFF6664 0.28 +0.1 41,823 - GFF6664 0.28 +0.3 41,823 - GFF6664 0.28 -1.7 41,823 - GFF6664 0.28 +0.6 41,823 - GFF6664 0.28 -1.1 41,823 - GFF6664 0.28 -1.2 41,840 + GFF6664 0.34 -0.4 41,840 + GFF6664 0.34 +0.5 41,841 - GFF6664 0.34 +1.4 41,841 - GFF6664 0.34 -0.8 41,841 - GFF6664 0.34 +0.4 41,841 - GFF6664 0.34 +0.0 41,903 + GFF6664 0.55 -0.5 41,903 + GFF6664 0.55 +0.0 41,903 + GFF6664 0.55 -0.2 41,903 + GFF6664 0.55 -0.6 41,903 + GFF6664 0.55 -0.7 41,903 + GFF6664 0.55 +1.2 41,903 + GFF6664 0.55 -0.1 41,904 - GFF6664 0.55 +0.2 41,904 - GFF6664 0.55 +1.2 41,904 - GFF6664 0.55 +0.8 41,904 - GFF6664 0.55 -0.2 41,904 - GFF6664 0.55 -1.6 41,904 - GFF6664 0.55 +0.8 41,981 + GFF6664 0.81 -1.3 41,981 + GFF6664 0.81 -0.2 41,981 + GFF6664 0.81 +0.3 41,981 + GFF6664 0.81 +0.0 41,981 + GFF6664 0.81 +0.0 41,982 - GFF6664 0.81 -1.3 41,982 - GFF6664 0.81 -0.6 42,190 + +1.2 42,190 + +0.1 42,190 + -0.4 42,190 + -0.1 42,190 + +1.6 42,190 + -0.5 42,190 + +0.4 42,190 + -0.2 42,190 + -0.3 42,190 + -0.1 42,190 + +0.8 42,190 + +0.6 42,190 + -0.7 42,190 + -0.3 42,190 + -0.3 42,191 - +0.0 42,191 - +0.6 42,191 - -0.5 42,191 - -0.6 42,191 - +0.0 42,191 - -1.2 42,191 - +0.2 42,191 - +1.2 42,191 - -0.8 42,191 - +1.0 42,191 - -0.1 42,461 - GFF6665 0.36 -1.6 42,461 - GFF6665 0.36 -1.0 42,461 - GFF6665 0.36 -0.1 42,461 - GFF6665 0.36 +0.7 42,652 + GFF6665 0.55 +0.0 42,652 + GFF6665 0.55 -0.5 42,652 + GFF6665 0.55 +2.2 42,652 + GFF6665 0.55 +1.4 42,652 + GFF6665 0.55 -1.2 42,652 + GFF6665 0.55 +0.0 42,653 - GFF6665 0.55 -0.3 42,653 - GFF6665 0.55 -0.5 42,653 - GFF6665 0.55 -0.2 42,653 - GFF6665 0.55 -0.4 42,653 - GFF6665 0.55 -0.5 42,653 - GFF6665 0.55 +1.6 42,727 + GFF6665 0.62 -0.9 42,728 - GFF6665 0.63 -1.3 42,728 - GFF6665 0.63 +0.3 42,728 - GFF6665 0.63 +0.2 42,728 - GFF6665 0.63 +0.1 42,769 + GFF6665 0.67 +0.2 42,769 + GFF6665 0.67 -0.3 42,769 + GFF6665 0.67 +0.0 42,769 + GFF6665 0.67 +0.6 42,770 - GFF6665 0.67 +0.8 42,770 - GFF6665 0.67 -0.1 42,770 - GFF6665 0.67 -0.9 42,770 - GFF6665 0.67 -0.6 43,024 + +0.3 43,024 + -0.8 43,024 + -2.1 43,024 + +1.6 43,024 + -0.2 43,024 + -0.2 43,024 + -0.7 43,024 + +1.6 43,025 - +0.3 43,025 - -0.3 43,025 - -0.2 43,025 - +0.9 43,025 - +0.1 43,025 - -0.1 43,025 - +1.6 43,025 - -0.4 43,025 - -0.1 43,025 - -0.5
Or see this region's nucleotide sequence