Strain Fitness in Variovorax sp. SCN45 around GFF6637

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
9,144	+		GFF6635	0.80	+0.0
9,144	+		GFF6635	0.80	+2.4
9,144	+		GFF6635	0.80	-0.8
9,145	-		GFF6635	0.80	-0.1
9,145	-		GFF6635	0.80	+0.2
9,147	+		GFF6635	0.80	-1.0
9,148	-		GFF6635	0.80	-1.1
9,148	-		GFF6635	0.80	-0.8
9,148	-		GFF6635	0.80	+0.3
9,148	-		GFF6635	0.80	+1.6
9,230	+				+0.8
9,230	+				-0.2
9,231	-				+1.2
9,365	+				+0.3
9,365	+				-0.7
9,365	+				+0.9
9,443	+		GFF6636	0.16	-0.5
9,443	+		GFF6636	0.16	-0.7
9,444	-		GFF6636	0.16	+0.2
9,444	-		GFF6636	0.16	-0.3
9,809	+		GFF6636	0.61	-0.1
9,809	+		GFF6636	0.61	+0.4
9,810	-		GFF6636	0.62	-0.5
9,810	-		GFF6636	0.62	+2.2
9,810	-		GFF6636	0.62	+0.4
9,810	-		GFF6636	0.62	+0.0
9,810	-		GFF6636	0.62	+0.1
9,810	-		GFF6636	0.62	+0.5
9,810	-		GFF6636	0.62	-0.4
9,884	+		GFF6636	0.71	-0.4
9,884	+		GFF6636	0.71	+0.3
9,884	+		GFF6636	0.71	-1.3
9,884	+		GFF6636	0.71	-0.6
9,884	+		GFF6636	0.71	-2.3
9,884	+		GFF6636	0.71	+1.6
9,884	+		GFF6636	0.71	-0.7
9,884	+		GFF6636	0.71	+1.5
9,884	+		GFF6636	0.71	-1.0
9,884	+		GFF6636	0.71	+0.0
9,884	+		GFF6636	0.71	-0.3
9,884	+		GFF6636	0.71	+0.1
9,884	+		GFF6636	0.71	+0.3
9,884	+		GFF6636	0.71	+0.3
9,884	+		GFF6636	0.71	-0.4
9,885	-		GFF6636	0.71	+0.4
9,885	-		GFF6636	0.71	-0.3
9,885	-		GFF6636	0.71	-0.0
9,885	-		GFF6636	0.71	-0.2
9,885	-		GFF6636	0.71	+0.5
9,885	-		GFF6636	0.71	+0.6
9,885	-		GFF6636	0.71	+1.6
9,885	-		GFF6636	0.71	+2.6
9,885	-		GFF6636	0.71	+0.2
9,885	-		GFF6636	0.71	-0.7
9,885	-		GFF6636	0.71	+0.2
10,339	-		GFF6637	0.14	-0.0
10,339	-		GFF6637	0.14	-1.3
10,404	+		GFF6637	0.18	-0.1
10,404	+		GFF6637	0.18	-0.1
10,404	+		GFF6637	0.18	+1.3
10,405	-		GFF6637	0.18	-0.8
10,405	-		GFF6637	0.18	-0.6
10,537	-		GFF6637	0.27	+0.4
10,537	-		GFF6637	0.27	-0.0
10,537	-		GFF6637	0.27	+0.9
10,537	-		GFF6637	0.27	-1.1
10,659	+		GFF6637	0.36	-0.4
10,659	+		GFF6637	0.36	+0.4
10,659	+		GFF6637	0.36	+0.3
10,659	+		GFF6637	0.36	-0.5
10,659	+		GFF6637	0.36	+1.1
10,659	+		GFF6637	0.36	+0.1
10,659	+		GFF6637	0.36	+0.4
10,659	+		GFF6637	0.36	-0.0
10,659	+		GFF6637	0.36	+0.6
10,659	+		GFF6637	0.36	+0.3
10,659	+		GFF6637	0.36	-0.6
10,659	+		GFF6637	0.36	+0.2
10,659	+		GFF6637	0.36	-0.1
10,660	-		GFF6637	0.36	-0.0
10,660	-		GFF6637	0.36	-0.5
10,660	-		GFF6637	0.36	-0.3
10,660	-		GFF6637	0.36	-0.5
10,660	-		GFF6637	0.36	+0.3
10,660	-		GFF6637	0.36	-0.6
10,660	-		GFF6637	0.36	+0.4
10,660	-		GFF6637	0.36	-0.0
10,660	-		GFF6637	0.36	+1.6
10,660	-		GFF6637	0.36	+0.9
10,660	-		GFF6637	0.36	-0.5
10,660	-		GFF6637	0.36	-0.4
10,660	-		GFF6637	0.36	+0.5
10,660	-		GFF6637	0.36	+0.3
10,857	+		GFF6637	0.49	-0.2
10,858	-		GFF6637	0.49	-0.4
10,858	-		GFF6637	0.49	+1.0
10,858	-		GFF6637	0.49	-0.4
11,157	+		GFF6637	0.70	-0.3
11,157	+		GFF6637	0.70	-0.3
11,157	+		GFF6637	0.70	+0.8
11,157	+		GFF6637	0.70	-2.6
11,158	-		GFF6637	0.70	+0.4
11,158	-		GFF6637	0.70	-0.4
11,158	-		GFF6637	0.70	+1.0
11,158	-		GFF6637	0.70	-0.1
11,158	-		GFF6637	0.70	+0.3
11,158	-		GFF6637	0.70	+0.4
11,158	-		GFF6637	0.70	-0.0
11,376	+		GFF6637	0.84	+1.0
11,377	-		GFF6637	0.84	-1.0
11,432	+		GFF6637	0.88	-1.0
11,707	+				-1.2
11,707	+				+0.0
11,707	+				-0.6
11,707	+				-0.1
11,707	+				-2.0
11,707	+				+0.7
11,708	-				-0.4
11,708	-				+1.0
11,708	-				-0.3
11,708	-				+0.7
11,708	-				-0.1
11,749	+		GFF6638	0.11	+0.3
11,749	+		GFF6638	0.11	-1.4
11,799	+		GFF6638	0.26	-0.7
11,799	+		GFF6638	0.26	+0.9
11,800	-		GFF6638	0.26	-0.8
11,800	-		GFF6638	0.26	-1.2
11,800	-		GFF6638	0.26	-0.3
11,800	-		GFF6638	0.26	+0.4
11,800	-		GFF6638	0.26	+1.1
11,800	-		GFF6638	0.26	+0.6
11,800	-		GFF6638	0.26	-0.4
11,800	-		GFF6638	0.26	-0.2
11,800	-		GFF6638	0.26	-0.1
11,802	+		GFF6638	0.26	-0.2
11,802	+		GFF6638	0.26	-1.6
11,802	+		GFF6638	0.26	+0.0
11,802	+		GFF6638	0.26	-1.0
11,802	+		GFF6638	0.26	-0.4
11,802	+		GFF6638	0.26	-0.9
11,802	+		GFF6638	0.26	-0.2
11,802	+		GFF6638	0.26	-0.8
11,802	+		GFF6638	0.26	+0.4
11,802	+		GFF6638	0.26	+0.8
11,802	+		GFF6638	0.26	-1.2
11,802	+		GFF6638	0.26	-0.3
11,802	+		GFF6638	0.26	-0.4
11,802	+		GFF6638	0.26	-0.1
11,802	+		GFF6638	0.26	+0.0
11,802	+		GFF6638	0.26	+0.9
11,802	+		GFF6638	0.26	-1.1
11,802	+		GFF6638	0.26	-0.1
11,803	-		GFF6638	0.27	+0.1
11,803	-		GFF6638	0.27	+0.3
11,803	-		GFF6638	0.27	+0.2
11,803	-		GFF6638	0.27	-0.3
11,803	-		GFF6638	0.27	-1.0
11,803	-		GFF6638	0.27	-0.7
11,803	-		GFF6638	0.27	-1.6
11,803	-		GFF6638	0.27	-1.0
11,803	-		GFF6638	0.27	-0.3
11,803	-		GFF6638	0.27	-1.7
11,803	-		GFF6638	0.27	-0.8
12,033	+				-0.2
12,033	+				-0.0
12,033	+				-0.7
12,033	+				+0.1
12,033	+				-1.6
12,033	+				+0.4
12,033	+				-1.6
12,033	+				-0.6
12,033	+				-0.6
12,033	+				-0.1
12,033	+				-0.7
12,033	+				+0.1
12,033	+				+1.4
12,034	-				+0.2
12,034	-				+0.0
12,034	-				+0.4
12,034	-				-0.1
12,034	-				-0.4
12,034	-				+0.0
12,034	-				+1.0
12,034	-				-1.0
12,034	-				+0.1
12,034	-				-0.8
12,034	-				-0.0
12,034	-				+1.0
12,034	-				+0.0
12,034	-				-1.4
12,034	-				-0.2
12,034	-				+1.4
12,034	-				+0.2
12,230	-		GFF6639	0.25	+0.4
12,350	+		GFF6639	0.41	-0.9
12,350	+		GFF6639	0.41	+0.0
12,419	+		GFF6639	0.51	-0.3
12,419	+		GFF6639	0.51	+0.0
12,420	-		GFF6639	0.51	+1.8
12,420	-		GFF6639	0.51	-0.7
12,420	-		GFF6639	0.51	+0.3
12,420	-		GFF6639	0.51	+1.3
12,420	-		GFF6639	0.51	-0.6
12,420	-		GFF6639	0.51	+0.3
12,420	-		GFF6639	0.51	-0.6
12,440	+		GFF6639	0.54	-0.2
12,440	+		GFF6639	0.54	-0.4
12,441	-		GFF6639	0.54	-1.2
12,441	-		GFF6639	0.54	+0.4
12,441	-		GFF6639	0.54	+0.4
12,441	-		GFF6639	0.54	+0.2
12,441	-		GFF6639	0.54	+1.0
12,483	-		GFF6639	0.60	-0.1
12,483	-		GFF6639	0.60	-0.6