Strain Fitness in Variovorax sp. SCN45 around GFF6625

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6624 and GFF6625 are separated by 201 nucleotidesGFF6625 and GFF6626 are separated by 285 nucleotides GFF6624 - hypothetical protein, at 69,186 to 70,220 GFF6624 GFF6625 - probable 1,4-butanediol diacrylate esterase, at 70,422 to 71,660 GFF6625 GFF6626 - ISPsy6, transposase, at 71,946 to 73,394 GFF6626 Position (kb) 70 71 72Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 69.727 kb on - strand, within GFF6624at 69.727 kb on - strand, within GFF6624at 69.727 kb on - strand, within GFF6624at 69.748 kb on + strand, within GFF6624at 69.900 kb on + strand, within GFF6624at 69.900 kb on + strand, within GFF6624at 69.901 kb on - strand, within GFF6624at 69.901 kb on - strand, within GFF6624at 69.901 kb on - strand, within GFF6624at 69.901 kb on - strand, within GFF6624at 69.941 kb on + strand, within GFF6624at 69.942 kb on - strand, within GFF6624at 70.296 kb on + strandat 70.296 kb on + strandat 70.296 kb on + strandat 70.297 kb on - strandat 70.297 kb on - strandat 70.398 kb on + strandat 70.399 kb on - strandat 70.436 kb on + strandat 70.530 kb on + strandat 70.530 kb on + strandat 70.530 kb on + strandat 70.531 kb on - strandat 70.531 kb on - strandat 70.690 kb on - strand, within GFF6625at 70.815 kb on + strand, within GFF6625at 70.815 kb on + strand, within GFF6625at 70.816 kb on - strand, within GFF6625at 70.816 kb on - strand, within GFF6625at 70.836 kb on + strand, within GFF6625at 70.836 kb on + strand, within GFF6625at 70.836 kb on + strand, within GFF6625at 70.836 kb on + strand, within GFF6625at 70.836 kb on + strand, within GFF6625at 70.837 kb on - strand, within GFF6625at 70.837 kb on - strand, within GFF6625at 70.837 kb on - strand, within GFF6625at 70.837 kb on - strand, within GFF6625at 70.939 kb on - strand, within GFF6625at 70.982 kb on + strand, within GFF6625at 70.983 kb on - strand, within GFF6625at 71.205 kb on + strand, within GFF6625at 71.206 kb on - strand, within GFF6625at 71.513 kb on + strand, within GFF6625at 71.520 kb on + strand, within GFF6625at 71.520 kb on + strand, within GFF6625at 71.520 kb on + strand, within GFF6625at 71.520 kb on + strand, within GFF6625at 71.521 kb on - strand, within GFF6625at 71.521 kb on - strand, within GFF6625at 71.521 kb on - strand, within GFF6625at 71.521 kb on - strand, within GFF6625at 71.523 kb on + strand, within GFF6625at 71.524 kb on - strand, within GFF6625at 71.524 kb on - strand, within GFF6625at 71.524 kb on - strand, within GFF6625at 71.631 kb on + strandat 71.631 kb on + strandat 71.631 kb on + strandat 71.632 kb on - strandat 71.632 kb on - strandat 71.632 kb on - strandat 72.012 kb on + strandat 72.012 kb on + strandat 72.012 kb on + strandat 72.012 kb on + strandat 72.013 kb on - strandat 72.013 kb on - strandat 72.013 kb on - strandat 72.014 kb on + strandat 72.014 kb on + strandat 72.014 kb on + strandat 72.014 kb on + strandat 72.014 kb on + strandat 72.015 kb on - strandat 72.015 kb on - strandat 72.015 kb on - strandat 72.123 kb on + strand, within GFF6626at 72.123 kb on + strand, within GFF6626at 72.124 kb on - strand, within GFF6626at 72.150 kb on + strand, within GFF6626at 72.150 kb on + strand, within GFF6626at 72.150 kb on + strand, within GFF6626at 72.150 kb on + strand, within GFF6626at 72.150 kb on + strand, within GFF6626at 72.150 kb on + strand, within GFF6626at 72.150 kb on + strand, within GFF6626at 72.150 kb on + strand, within GFF6626at 72.150 kb on + strand, within GFF6626at 72.151 kb on - strand, within GFF6626at 72.151 kb on - strand, within GFF6626at 72.151 kb on - strand, within GFF6626at 72.156 kb on + strand, within GFF6626at 72.156 kb on + strand, within GFF6626at 72.156 kb on + strand, within GFF6626at 72.156 kb on + strand, within GFF6626at 72.156 kb on + strand, within GFF6626at 72.156 kb on + strand, within GFF6626at 72.156 kb on + strand, within GFF6626at 72.156 kb on + strand, within GFF6626at 72.156 kb on + strand, within GFF6626at 72.157 kb on - strand, within GFF6626at 72.157 kb on - strand, within GFF6626at 72.157 kb on - strand, within GFF6626at 72.157 kb on - strand, within GFF6626at 72.157 kb on - strand, within GFF6626at 72.157 kb on - strand, within GFF6626at 72.157 kb on - strand, within GFF6626at 72.157 kb on - strand, within GFF6626at 72.157 kb on - strand, within GFF6626at 72.157 kb on - strand, within GFF6626at 72.163 kb on - strand, within GFF6626at 72.298 kb on + strand, within GFF6626at 72.298 kb on + strand, within GFF6626at 72.298 kb on + strand, within GFF6626at 72.298 kb on + strand, within GFF6626at 72.298 kb on + strand, within GFF6626at 72.299 kb on - strand, within GFF6626at 72.471 kb on + strand, within GFF6626at 72.471 kb on + strand, within GFF6626

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
69,727 - GFF6624 0.52 -0.2
69,727 - GFF6624 0.52 -0.4
69,727 - GFF6624 0.52 +1.4
69,748 + GFF6624 0.54 -0.2
69,900 + GFF6624 0.69 -0.7
69,900 + GFF6624 0.69 +0.4
69,901 - GFF6624 0.69 +0.2
69,901 - GFF6624 0.69 -1.5
69,901 - GFF6624 0.69 +0.4
69,901 - GFF6624 0.69 +2.5
69,941 + GFF6624 0.73 +0.2
69,942 - GFF6624 0.73 +2.5
70,296 + -0.7
70,296 + -0.5
70,296 + -0.5
70,297 - -0.1
70,297 - +0.3
70,398 + -0.3
70,399 - +0.2
70,436 + -0.3
70,530 + +0.5
70,530 + -0.0
70,530 + -0.1
70,531 - -1.5
70,531 - -0.9
70,690 - GFF6625 0.22 -0.0
70,815 + GFF6625 0.32 -0.0
70,815 + GFF6625 0.32 -0.3
70,816 - GFF6625 0.32 +0.1
70,816 - GFF6625 0.32 -0.0
70,836 + GFF6625 0.33 +0.4
70,836 + GFF6625 0.33 -0.2
70,836 + GFF6625 0.33 +0.1
70,836 + GFF6625 0.33 -0.2
70,836 + GFF6625 0.33 +0.0
70,837 - GFF6625 0.33 +0.3
70,837 - GFF6625 0.33 -0.5
70,837 - GFF6625 0.33 -0.7
70,837 - GFF6625 0.33 -0.8
70,939 - GFF6625 0.42 -0.6
70,982 + GFF6625 0.45 +1.3
70,983 - GFF6625 0.45 -0.2
71,205 + GFF6625 0.63 +0.5
71,206 - GFF6625 0.63 +1.8
71,513 + GFF6625 0.88 -0.0
71,520 + GFF6625 0.89 -1.0
71,520 + GFF6625 0.89 +1.0
71,520 + GFF6625 0.89 -0.2
71,520 + GFF6625 0.89 +0.1
71,521 - GFF6625 0.89 -0.7
71,521 - GFF6625 0.89 -0.2
71,521 - GFF6625 0.89 +1.0
71,521 - GFF6625 0.89 -0.5
71,523 + GFF6625 0.89 +1.2
71,524 - GFF6625 0.89 +0.5
71,524 - GFF6625 0.89 +0.1
71,524 - GFF6625 0.89 -2.0
71,631 + +3.9
71,631 + -1.0
71,631 + -0.0
71,632 - -1.3
71,632 - -0.7
71,632 - -1.0
72,012 + -1.5
72,012 + +0.1
72,012 + -0.4
72,012 + -0.7
72,013 - +0.5
72,013 - -0.2
72,013 - -0.6
72,014 + -0.3
72,014 + -0.6
72,014 + -2.3
72,014 + -0.9
72,014 + -0.2
72,015 - +0.1
72,015 - -0.9
72,015 - -1.4
72,123 + GFF6626 0.12 -0.3
72,123 + GFF6626 0.12 +0.1
72,124 - GFF6626 0.12 -0.0
72,150 + GFF6626 0.14 -1.4
72,150 + GFF6626 0.14 +0.4
72,150 + GFF6626 0.14 -0.8
72,150 + GFF6626 0.14 +0.3
72,150 + GFF6626 0.14 -0.7
72,150 + GFF6626 0.14 +0.1
72,150 + GFF6626 0.14 -0.7
72,150 + GFF6626 0.14 -0.5
72,150 + GFF6626 0.14 +0.1
72,151 - GFF6626 0.14 -0.1
72,151 - GFF6626 0.14 -0.2
72,151 - GFF6626 0.14 -0.8
72,156 + GFF6626 0.14 -0.5
72,156 + GFF6626 0.14 +0.7
72,156 + GFF6626 0.14 -0.2
72,156 + GFF6626 0.14 +0.5
72,156 + GFF6626 0.14 +0.7
72,156 + GFF6626 0.14 +1.9
72,156 + GFF6626 0.14 -0.5
72,156 + GFF6626 0.14 +1.1
72,156 + GFF6626 0.14 -0.5
72,157 - GFF6626 0.15 -0.2
72,157 - GFF6626 0.15 -0.6
72,157 - GFF6626 0.15 +0.1
72,157 - GFF6626 0.15 -1.3
72,157 - GFF6626 0.15 +2.0
72,157 - GFF6626 0.15 -0.4
72,157 - GFF6626 0.15 -1.0
72,157 - GFF6626 0.15 +0.5
72,157 - GFF6626 0.15 -0.5
72,157 - GFF6626 0.15 +0.2
72,163 - GFF6626 0.15 -0.9
72,298 + GFF6626 0.24 +0.3
72,298 + GFF6626 0.24 -1.2
72,298 + GFF6626 0.24 -0.3
72,298 + GFF6626 0.24 -0.4
72,298 + GFF6626 0.24 -1.1
72,299 - GFF6626 0.24 -0.9
72,471 + GFF6626 0.36 -0.1
72,471 + GFF6626 0.36 +3.1

Or see this region's nucleotide sequence