Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6622 and GFF6623 are separated by 286 nucleotides GFF6623 and GFF6624 are separated by 7 nucleotides
GFF6622 - Mobile element protein, at 67,135 to 67,887
GFF6622
GFF6623 - Esterase/lipase, at 68,174 to 69,178
GFF6623
GFF6624 - hypothetical protein, at 69,186 to 70,220
GFF6624
Position (kb) 68
69
70 Strain fitness (log2 ratio) -2
-1
0
1
2 at 67.201 kb on + strand at 67.201 kb on + strand at 67.357 kb on + strand, within GFF6622 at 67.357 kb on + strand, within GFF6622 at 67.357 kb on + strand, within GFF6622 at 67.358 kb on - strand, within GFF6622 at 67.534 kb on + strand, within GFF6622 at 67.534 kb on + strand, within GFF6622 at 67.534 kb on + strand, within GFF6622 at 67.534 kb on + strand, within GFF6622 at 67.535 kb on - strand, within GFF6622 at 67.535 kb on - strand, within GFF6622 at 67.535 kb on - strand, within GFF6622 at 67.535 kb on - strand, within GFF6622 at 67.612 kb on + strand, within GFF6622 at 67.612 kb on + strand, within GFF6622 at 67.613 kb on - strand, within GFF6622 at 67.629 kb on - strand, within GFF6622 at 67.912 kb on - strand at 67.912 kb on - strand at 67.912 kb on - strand at 67.937 kb on + strand at 67.938 kb on - strand at 67.992 kb on + strand at 67.998 kb on + strand at 67.998 kb on + strand at 67.998 kb on + strand at 67.998 kb on + strand at 67.999 kb on - strand at 67.999 kb on - strand at 68.092 kb on + strand at 68.093 kb on - strand at 68.093 kb on - strand at 68.141 kb on - strand at 68.141 kb on - strand at 68.627 kb on + strand, within GFF6623 at 68.752 kb on + strand, within GFF6623 at 68.964 kb on + strand, within GFF6623 at 68.964 kb on + strand, within GFF6623 at 68.964 kb on + strand, within GFF6623 at 68.965 kb on - strand, within GFF6623 at 68.965 kb on - strand, within GFF6623 at 69.024 kb on - strand, within GFF6623 at 69.024 kb on - strand, within GFF6623 at 69.024 kb on - strand, within GFF6623 at 69.113 kb on - strand at 69.185 kb on + strand at 69.185 kb on + strand at 69.185 kb on + strand at 69.185 kb on + strand at 69.185 kb on + strand at 69.186 kb on - strand at 69.186 kb on - strand at 69.186 kb on - strand at 69.186 kb on - strand at 69.727 kb on - strand, within GFF6624 at 69.727 kb on - strand, within GFF6624 at 69.727 kb on - strand, within GFF6624 at 69.748 kb on + strand, within GFF6624 at 69.900 kb on + strand, within GFF6624 at 69.900 kb on + strand, within GFF6624 at 69.901 kb on - strand, within GFF6624 at 69.901 kb on - strand, within GFF6624 at 69.901 kb on - strand, within GFF6624 at 69.901 kb on - strand, within GFF6624 at 69.941 kb on + strand, within GFF6624 at 69.942 kb on - strand, within GFF6624
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 67,201 + +0.0 67,201 + +0.3 67,357 + GFF6622 0.29 -0.4 67,357 + GFF6622 0.29 +1.1 67,357 + GFF6622 0.29 +0.1 67,358 - GFF6622 0.30 -0.6 67,534 + GFF6622 0.53 -1.0 67,534 + GFF6622 0.53 -1.2 67,534 + GFF6622 0.53 -0.4 67,534 + GFF6622 0.53 +0.7 67,535 - GFF6622 0.53 +0.1 67,535 - GFF6622 0.53 -0.5 67,535 - GFF6622 0.53 -0.0 67,535 - GFF6622 0.53 -1.6 67,612 + GFF6622 0.63 -0.6 67,612 + GFF6622 0.63 +0.2 67,613 - GFF6622 0.63 -1.5 67,629 - GFF6622 0.66 -0.5 67,912 - -0.2 67,912 - -0.5 67,912 - +1.5 67,937 + -0.6 67,938 - -0.5 67,992 + -0.8 67,998 + -0.2 67,998 + -1.5 67,998 + -1.0 67,998 + -1.0 67,999 - -0.0 67,999 - -0.5 68,092 + -0.0 68,093 - +1.0 68,093 - -0.3 68,141 - -1.8 68,141 - -0.3 68,627 + GFF6623 0.45 +0.2 68,752 + GFF6623 0.58 +1.5 68,964 + GFF6623 0.79 -0.5 68,964 + GFF6623 0.79 +0.4 68,964 + GFF6623 0.79 -0.0 68,965 - GFF6623 0.79 -0.8 68,965 - GFF6623 0.79 +0.4 69,024 - GFF6623 0.85 +1.4 69,024 - GFF6623 0.85 +0.4 69,024 - GFF6623 0.85 -1.9 69,113 - -0.4 69,185 + +0.3 69,185 + -0.2 69,185 + +1.1 69,185 + +0.2 69,185 + +0.3 69,186 - -0.3 69,186 - +0.7 69,186 - +1.0 69,186 - +0.3 69,727 - GFF6624 0.52 -0.2 69,727 - GFF6624 0.52 -0.4 69,727 - GFF6624 0.52 +1.4 69,748 + GFF6624 0.54 -0.2 69,900 + GFF6624 0.69 -0.7 69,900 + GFF6624 0.69 +0.4 69,901 - GFF6624 0.69 +0.2 69,901 - GFF6624 0.69 -1.5 69,901 - GFF6624 0.69 +0.4 69,901 - GFF6624 0.69 +2.5 69,941 + GFF6624 0.73 +0.2 69,942 - GFF6624 0.73 +2.5
Or see this region's nucleotide sequence