Strain Fitness in Variovorax sp. SCN45 around GFF662

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF661 and GFF662 are separated by 744 nucleotidesGFF662 and GFF663 are separated by 31 nucleotidesGFF663 and GFF664 are separated by 122 nucleotides GFF661 - no description, at 714,541 to 714,855 GFF661 GFF662 - no description, at 715,600 to 715,866 GFF662 GFF663 - Transcriptional regulator, Crp/Fnr family, at 715,898 to 716,602 GFF663 GFF664 - no description, at 716,725 to 717,003 GFF664 Position (kb) 715 716Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 714.608 kb on + strand, within GFF661at 714.609 kb on - strand, within GFF661at 714.609 kb on - strand, within GFF661at 714.765 kb on - strand, within GFF661at 714.765 kb on - strand, within GFF661at 714.911 kb on + strandat 714.945 kb on + strandat 715.039 kb on + strandat 715.039 kb on + strandat 715.040 kb on - strandat 715.051 kb on + strandat 715.052 kb on - strandat 715.054 kb on + strandat 715.063 kb on + strandat 715.147 kb on + strandat 715.148 kb on - strandat 715.148 kb on - strandat 715.148 kb on - strandat 715.148 kb on - strandat 715.148 kb on - strandat 715.173 kb on + strandat 715.174 kb on - strandat 715.255 kb on + strandat 715.609 kb on + strandat 715.609 kb on + strandat 715.610 kb on - strandat 715.610 kb on - strandat 715.610 kb on - strandat 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.723 kb on + strand, within GFF662at 715.723 kb on + strand, within GFF662at 715.723 kb on + strand, within GFF662at 715.723 kb on + strand, within GFF662at 715.723 kb on + strand, within GFF662at 715.724 kb on - strand, within GFF662at 715.724 kb on - strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.980 kb on + strand, within GFF663at 715.981 kb on - strand, within GFF663at 715.981 kb on - strand, within GFF663at 715.981 kb on - strand, within GFF663at 716.067 kb on + strand, within GFF663at 716.067 kb on + strand, within GFF663at 716.067 kb on + strand, within GFF663at 716.067 kb on + strand, within GFF663at 716.068 kb on - strand, within GFF663at 716.068 kb on - strand, within GFF663at 716.068 kb on - strand, within GFF663at 716.215 kb on + strand, within GFF663at 716.215 kb on + strand, within GFF663at 716.215 kb on + strand, within GFF663at 716.215 kb on + strand, within GFF663at 716.215 kb on + strand, within GFF663at 716.215 kb on + strand, within GFF663at 716.215 kb on + strand, within GFF663at 716.215 kb on + strand, within GFF663at 716.216 kb on - strand, within GFF663at 716.216 kb on - strand, within GFF663at 716.216 kb on - strand, within GFF663at 716.216 kb on - strand, within GFF663at 716.216 kb on - strand, within GFF663at 716.216 kb on - strand, within GFF663at 716.216 kb on - strand, within GFF663at 716.290 kb on + strand, within GFF663at 716.291 kb on - strand, within GFF663at 716.291 kb on - strand, within GFF663at 716.291 kb on - strand, within GFF663at 716.291 kb on - strand, within GFF663at 716.301 kb on + strand, within GFF663at 716.302 kb on - strand, within GFF663at 716.302 kb on - strand, within GFF663at 716.346 kb on + strand, within GFF663at 716.472 kb on + strand, within GFF663at 716.472 kb on + strand, within GFF663at 716.472 kb on + strand, within GFF663at 716.472 kb on + strand, within GFF663at 716.472 kb on + strand, within GFF663at 716.472 kb on + strand, within GFF663at 716.472 kb on + strand, within GFF663at 716.473 kb on - strand, within GFF663at 716.473 kb on - strand, within GFF663at 716.473 kb on - strand, within GFF663at 716.473 kb on - strand, within GFF663at 716.473 kb on - strand, within GFF663at 716.473 kb on - strand, within GFF663at 716.473 kb on - strand, within GFF663at 716.473 kb on - strand, within GFF663at 716.523 kb on + strand, within GFF663at 716.523 kb on + strand, within GFF663at 716.523 kb on + strand, within GFF663at 716.523 kb on + strand, within GFF663at 716.524 kb on - strand, within GFF663at 716.524 kb on - strand, within GFF663at 716.524 kb on - strand, within GFF663at 716.524 kb on - strand, within GFF663at 716.524 kb on - strand, within GFF663at 716.524 kb on - strand, within GFF663at 716.524 kb on - strand, within GFF663at 716.598 kb on + strandat 716.598 kb on + strandat 716.598 kb on + strandat 716.598 kb on + strandat 716.598 kb on + strandat 716.598 kb on + strandat 716.598 kb on + strandat 716.598 kb on + strandat 716.598 kb on + strandat 716.598 kb on + strandat 716.598 kb on + strandat 716.598 kb on + strandat 716.598 kb on + strandat 716.598 kb on + strandat 716.598 kb on + strandat 716.598 kb on + strandat 716.598 kb on + strandat 716.598 kb on + strandat 716.598 kb on + strandat 716.599 kb on - strandat 716.599 kb on - strandat 716.599 kb on - strandat 716.599 kb on - strandat 716.599 kb on - strandat 716.599 kb on - strandat 716.599 kb on - strandat 716.599 kb on - strandat 716.599 kb on - strandat 716.599 kb on - strandat 716.599 kb on - strandat 716.648 kb on + strandat 716.648 kb on + strandat 716.648 kb on + strandat 716.648 kb on + strandat 716.648 kb on + strandat 716.648 kb on + strandat 716.652 kb on + strandat 716.652 kb on + strandat 716.653 kb on - strandat 716.653 kb on - strandat 716.653 kb on - strandat 716.670 kb on - strandat 716.676 kb on + strandat 716.677 kb on - strandat 716.677 kb on - strandat 716.677 kb on - strandat 716.678 kb on + strandat 716.678 kb on + strandat 716.678 kb on + strandat 716.679 kb on - strandat 716.679 kb on - strandat 716.679 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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714,608 + GFF661 0.21 +0.5
714,609 - GFF661 0.22 -0.3
714,609 - GFF661 0.22 -0.9
714,765 - GFF661 0.71 +0.8
714,765 - GFF661 0.71 -1.5
714,911 + +0.0
714,945 + +0.0
715,039 + -0.1
715,039 + -1.0
715,040 - +1.8
715,051 + +0.4
715,052 - +0.5
715,054 + -1.1
715,063 + +0.8
715,147 + -0.3
715,148 - -1.0
715,148 - +0.7
715,148 - -1.8
715,148 - +0.2
715,148 - +0.7
715,173 + -1.0
715,174 - +1.2
715,255 + -0.2
715,609 + +0.8
715,609 + -0.9
715,610 - -1.2
715,610 - -0.3
715,610 - +0.2
715,630 + GFF662 0.11 -0.1
715,630 + GFF662 0.11 -0.5
715,630 + GFF662 0.11 +0.2
715,630 + GFF662 0.11 +0.6
715,630 + GFF662 0.11 +0.8
715,630 + GFF662 0.11 -0.9
715,630 + GFF662 0.11 +0.3
715,630 + GFF662 0.11 +3.9
715,630 + GFF662 0.11 +0.0
715,630 + GFF662 0.11 -0.3
715,630 + GFF662 0.11 -0.1
715,630 + GFF662 0.11 +0.1
715,630 + GFF662 0.11 -1.0
715,630 + GFF662 0.11 -0.8
715,630 + GFF662 0.11 -1.5
715,630 + GFF662 0.11 +0.5
715,630 + GFF662 0.11 +0.6
715,630 + GFF662 0.11 -0.8
715,630 + GFF662 0.11 -0.2
715,630 + GFF662 0.11 +1.2
715,630 + GFF662 0.11 +1.0
715,630 + GFF662 0.11 -0.5
715,630 + GFF662 0.11 +0.3
715,631 - GFF662 0.12 +0.6
715,631 - GFF662 0.12 -0.4
715,631 - GFF662 0.12 -0.5
715,631 - GFF662 0.12 -0.3
715,631 - GFF662 0.12 -0.3
715,631 - GFF662 0.12 +0.1
715,631 - GFF662 0.12 +0.3
715,631 - GFF662 0.12 -0.2
715,631 - GFF662 0.12 -0.6
715,631 - GFF662 0.12 -0.5
715,631 - GFF662 0.12 +0.3
715,631 - GFF662 0.12 -0.7
715,631 - GFF662 0.12 +0.0
715,631 - GFF662 0.12 -1.2
715,631 - GFF662 0.12 +0.4
715,723 + GFF662 0.46 -0.0
715,723 + GFF662 0.46 +0.0
715,723 + GFF662 0.46 +0.8
715,723 + GFF662 0.46 +0.4
715,723 + GFF662 0.46 -0.1
715,724 - GFF662 0.46 +0.2
715,724 - GFF662 0.46 +1.5
715,786 + GFF662 0.70 -0.7
715,786 + GFF662 0.70 -0.5
715,786 + GFF662 0.70 +0.5
715,786 + GFF662 0.70 +0.2
715,786 + GFF662 0.70 -1.3
715,786 + GFF662 0.70 +0.2
715,786 + GFF662 0.70 -0.2
715,786 + GFF662 0.70 -0.2
715,787 - GFF662 0.70 +1.8
715,787 - GFF662 0.70 -0.2
715,787 - GFF662 0.70 -0.2
715,787 - GFF662 0.70 -0.1
715,787 - GFF662 0.70 -0.4
715,787 - GFF662 0.70 -1.2
715,787 - GFF662 0.70 -1.5
715,787 - GFF662 0.70 -0.4
715,787 - GFF662 0.70 +0.2
715,787 - GFF662 0.70 -0.2
715,787 - GFF662 0.70 -0.4
715,787 - GFF662 0.70 +0.4
715,980 + GFF663 0.12 +0.6
715,981 - GFF663 0.12 +0.3
715,981 - GFF663 0.12 +0.3
715,981 - GFF663 0.12 +0.6
716,067 + GFF663 0.24 +1.8
716,067 + GFF663 0.24 -0.1
716,067 + GFF663 0.24 +0.2
716,067 + GFF663 0.24 +0.7
716,068 - GFF663 0.24 -0.4
716,068 - GFF663 0.24 +0.1
716,068 - GFF663 0.24 +0.8
716,215 + GFF663 0.45 -0.4
716,215 + GFF663 0.45 -0.4
716,215 + GFF663 0.45 -1.0
716,215 + GFF663 0.45 -0.3
716,215 + GFF663 0.45 +0.8
716,215 + GFF663 0.45 +1.8
716,215 + GFF663 0.45 +0.0
716,215 + GFF663 0.45 -0.3
716,216 - GFF663 0.45 -0.8
716,216 - GFF663 0.45 +0.0
716,216 - GFF663 0.45 +2.2
716,216 - GFF663 0.45 +0.7
716,216 - GFF663 0.45 +1.0
716,216 - GFF663 0.45 +0.7
716,216 - GFF663 0.45 +0.8
716,290 + GFF663 0.56 -0.7
716,291 - GFF663 0.56 +0.3
716,291 - GFF663 0.56 -0.3
716,291 - GFF663 0.56 +0.2
716,291 - GFF663 0.56 -1.2
716,301 + GFF663 0.57 +0.1
716,302 - GFF663 0.57 +0.0
716,302 - GFF663 0.57 -0.6
716,346 + GFF663 0.64 +0.5
716,472 + GFF663 0.81 +0.6
716,472 + GFF663 0.81 -1.0
716,472 + GFF663 0.81 +0.8
716,472 + GFF663 0.81 -0.1
716,472 + GFF663 0.81 -0.4
716,472 + GFF663 0.81 -0.8
716,472 + GFF663 0.81 -0.0
716,473 - GFF663 0.82 -0.4
716,473 - GFF663 0.82 -0.6
716,473 - GFF663 0.82 +0.9
716,473 - GFF663 0.82 -0.4
716,473 - GFF663 0.82 +0.2
716,473 - GFF663 0.82 -0.8
716,473 - GFF663 0.82 -0.1
716,473 - GFF663 0.82 -0.4
716,523 + GFF663 0.89 +1.8
716,523 + GFF663 0.89 +1.8
716,523 + GFF663 0.89 -0.3
716,523 + GFF663 0.89 +0.5
716,524 - GFF663 0.89 +0.5
716,524 - GFF663 0.89 +0.0
716,524 - GFF663 0.89 -0.4
716,524 - GFF663 0.89 +0.6
716,524 - GFF663 0.89 +0.4
716,524 - GFF663 0.89 -0.5
716,524 - GFF663 0.89 -0.9
716,598 + +0.2
716,598 + -0.2
716,598 + -0.7
716,598 + +0.0
716,598 + +0.3
716,598 + +0.4
716,598 + +0.7
716,598 + +0.4
716,598 + -0.6
716,598 + -1.3
716,598 + -0.3
716,598 + +0.2
716,598 + +0.0
716,598 + +0.4
716,598 + -0.5
716,598 + -1.2
716,598 + +0.8
716,598 + +0.6
716,598 + -0.7
716,599 - +0.0
716,599 - -1.2
716,599 - +0.0
716,599 - +1.1
716,599 - +0.2
716,599 - +0.5
716,599 - -0.5
716,599 - -0.6
716,599 - +1.2
716,599 - -1.9
716,599 - -0.6
716,648 + +0.8
716,648 + +0.2
716,648 + -0.4
716,648 + -0.6
716,648 + +1.8
716,648 + +0.2
716,652 + -0.0
716,652 + +0.4
716,653 - -0.7
716,653 - -0.6
716,653 - -0.4
716,670 - -0.0
716,676 + -0.3
716,677 - +0.7
716,677 - -0.5
716,677 - +0.8
716,678 + +1.0
716,678 + -0.1
716,678 + +0.1
716,679 - -0.5
716,679 - +0.9
716,679 - +0.1

Or see this region's nucleotide sequence