Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6613 and GFF6614 are separated by 6 nucleotides GFF6614 and GFF6615 are separated by 654 nucleotides
GFF6613 - no description, at 56,522 to 57,067
GFF6613
GFF6614 - hypothetical protein, at 57,074 to 57,715
GFF6614
GFF6615 - putative plasmid stabilization protein, at 58,370 to 60,397
GFF6615
Position (kb) 57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 56.074 kb on - strand at 56.233 kb on + strand at 56.234 kb on - strand at 56.234 kb on - strand at 56.292 kb on + strand at 56.292 kb on + strand at 56.292 kb on + strand at 56.292 kb on + strand at 56.293 kb on - strand at 56.404 kb on - strand at 56.404 kb on - strand at 56.404 kb on - strand at 56.469 kb on + strand at 56.469 kb on + strand at 56.495 kb on + strand at 56.495 kb on + strand at 56.495 kb on + strand at 56.495 kb on + strand at 56.496 kb on - strand at 56.496 kb on - strand at 56.496 kb on - strand at 56.496 kb on - strand at 56.528 kb on + strand at 56.536 kb on + strand at 56.536 kb on + strand at 56.536 kb on + strand at 56.537 kb on - strand at 56.537 kb on - strand at 56.537 kb on - strand at 56.537 kb on - strand at 56.537 kb on - strand at 56.567 kb on + strand at 56.567 kb on + strand at 56.568 kb on - strand at 56.568 kb on - strand at 56.568 kb on - strand at 56.671 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.687 kb on + strand, within GFF6613 at 56.688 kb on - strand, within GFF6613 at 56.688 kb on - strand, within GFF6613 at 56.688 kb on - strand, within GFF6613 at 56.688 kb on - strand, within GFF6613 at 56.688 kb on - strand, within GFF6613 at 56.688 kb on - strand, within GFF6613 at 56.693 kb on + strand, within GFF6613 at 56.693 kb on + strand, within GFF6613 at 56.694 kb on - strand, within GFF6613 at 56.715 kb on + strand, within GFF6613 at 56.715 kb on + strand, within GFF6613 at 56.716 kb on - strand, within GFF6613 at 56.716 kb on - strand, within GFF6613 at 56.716 kb on - strand, within GFF6613 at 56.768 kb on + strand, within GFF6613 at 56.769 kb on - strand, within GFF6613 at 56.898 kb on - strand, within GFF6613 at 56.898 kb on - strand, within GFF6613 at 56.898 kb on - strand, within GFF6613 at 56.898 kb on - strand, within GFF6613 at 56.898 kb on - strand, within GFF6613 at 56.975 kb on + strand, within GFF6613 at 56.975 kb on + strand, within GFF6613 at 56.975 kb on + strand, within GFF6613 at 56.975 kb on + strand, within GFF6613 at 56.976 kb on - strand, within GFF6613 at 56.976 kb on - strand, within GFF6613 at 56.976 kb on - strand, within GFF6613 at 57.008 kb on + strand, within GFF6613 at 57.250 kb on + strand, within GFF6614 at 57.251 kb on - strand, within GFF6614 at 57.258 kb on + strand, within GFF6614 at 57.259 kb on - strand, within GFF6614 at 57.259 kb on - strand, within GFF6614 at 57.330 kb on + strand, within GFF6614 at 57.331 kb on + strand, within GFF6614 at 57.379 kb on + strand, within GFF6614 at 57.379 kb on + strand, within GFF6614 at 57.380 kb on - strand, within GFF6614 at 57.381 kb on + strand, within GFF6614 at 57.382 kb on - strand, within GFF6614 at 57.382 kb on - strand, within GFF6614 at 57.382 kb on - strand, within GFF6614 at 57.393 kb on + strand, within GFF6614 at 57.393 kb on + strand, within GFF6614 at 57.393 kb on + strand, within GFF6614 at 57.394 kb on - strand, within GFF6614 at 57.394 kb on - strand, within GFF6614 at 57.394 kb on - strand, within GFF6614 at 57.394 kb on - strand, within GFF6614 at 57.531 kb on - strand, within GFF6614 at 57.621 kb on + strand, within GFF6614 at 57.622 kb on - strand, within GFF6614 at 57.711 kb on + strand at 57.711 kb on + strand at 57.712 kb on - strand at 57.712 kb on - strand at 57.732 kb on + strand at 57.732 kb on + strand at 57.732 kb on + strand at 57.732 kb on + strand at 57.733 kb on - strand at 57.733 kb on - strand at 57.733 kb on - strand at 57.733 kb on - strand at 57.733 kb on - strand at 57.733 kb on - strand at 57.733 kb on - strand at 57.733 kb on - strand at 57.733 kb on - strand at 57.734 kb on + strand at 57.734 kb on + strand at 57.734 kb on + strand at 57.734 kb on + strand at 57.735 kb on - strand at 57.735 kb on - strand at 57.735 kb on - strand at 57.839 kb on + strand at 57.839 kb on + strand at 57.839 kb on + strand at 57.839 kb on + strand at 57.840 kb on - strand at 57.840 kb on - strand at 57.926 kb on + strand at 57.926 kb on + strand at 57.926 kb on + strand at 57.926 kb on + strand at 57.927 kb on - strand at 57.930 kb on + strand at 57.930 kb on + strand at 57.931 kb on - strand at 58.259 kb on + strand at 58.259 kb on + strand at 58.260 kb on - strand at 58.260 kb on - strand at 58.260 kb on - strand at 58.611 kb on + strand, within GFF6615 at 58.611 kb on + strand, within GFF6615 at 58.655 kb on + strand, within GFF6615 at 58.656 kb on - strand, within GFF6615
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 56,074 - -0.9 56,233 + -0.2 56,234 - -0.4 56,234 - +0.5 56,292 + -1.5 56,292 + +0.1 56,292 + -0.3 56,292 + +0.5 56,293 - +1.9 56,404 - +0.6 56,404 - -0.1 56,404 - +0.5 56,469 + -0.2 56,469 + -0.8 56,495 + +0.4 56,495 + -0.6 56,495 + +1.1 56,495 + +1.0 56,496 - +1.1 56,496 - -0.2 56,496 - -1.0 56,496 - -0.5 56,528 + +0.0 56,536 + +0.1 56,536 + -0.1 56,536 + -0.1 56,537 - -0.6 56,537 - +0.4 56,537 - -0.5 56,537 - -0.6 56,537 - -0.2 56,567 + -0.2 56,567 + +0.3 56,568 - -0.4 56,568 - -0.3 56,568 - -1.0 56,671 + GFF6613 0.27 -2.9 56,687 + GFF6613 0.30 -0.6 56,687 + GFF6613 0.30 -0.0 56,687 + GFF6613 0.30 -0.1 56,687 + GFF6613 0.30 +0.7 56,687 + GFF6613 0.30 -0.2 56,687 + GFF6613 0.30 -2.0 56,687 + GFF6613 0.30 -1.0 56,687 + GFF6613 0.30 +1.0 56,687 + GFF6613 0.30 +0.1 56,687 + GFF6613 0.30 +1.5 56,687 + GFF6613 0.30 -0.2 56,687 + GFF6613 0.30 -0.4 56,687 + GFF6613 0.30 -1.8 56,687 + GFF6613 0.30 +0.3 56,687 + GFF6613 0.30 -0.3 56,687 + GFF6613 0.30 -0.4 56,688 - GFF6613 0.30 +0.2 56,688 - GFF6613 0.30 -0.2 56,688 - GFF6613 0.30 +1.5 56,688 - GFF6613 0.30 -1.8 56,688 - GFF6613 0.30 -0.5 56,688 - GFF6613 0.30 +0.1 56,693 + GFF6613 0.31 -1.3 56,693 + GFF6613 0.31 -0.3 56,694 - GFF6613 0.32 -0.8 56,715 + GFF6613 0.35 +0.1 56,715 + GFF6613 0.35 +0.4 56,716 - GFF6613 0.36 -0.1 56,716 - GFF6613 0.36 -0.5 56,716 - GFF6613 0.36 -0.2 56,768 + GFF6613 0.45 -0.5 56,769 - GFF6613 0.45 +0.8 56,898 - GFF6613 0.69 -0.7 56,898 - GFF6613 0.69 +0.5 56,898 - GFF6613 0.69 -0.6 56,898 - GFF6613 0.69 +0.3 56,898 - GFF6613 0.69 +1.0 56,975 + GFF6613 0.83 +0.5 56,975 + GFF6613 0.83 +0.9 56,975 + GFF6613 0.83 -0.0 56,975 + GFF6613 0.83 +1.5 56,976 - GFF6613 0.83 -1.2 56,976 - GFF6613 0.83 +2.0 56,976 - GFF6613 0.83 -0.5 57,008 + GFF6613 0.89 -0.8 57,250 + GFF6614 0.27 -0.2 57,251 - GFF6614 0.28 -0.7 57,258 + GFF6614 0.29 -0.3 57,259 - GFF6614 0.29 -0.1 57,259 - GFF6614 0.29 -0.5 57,330 + GFF6614 0.40 -0.2 57,331 + GFF6614 0.40 +0.0 57,379 + GFF6614 0.48 -0.4 57,379 + GFF6614 0.48 -0.8 57,380 - GFF6614 0.48 -1.9 57,381 + GFF6614 0.48 +0.3 57,382 - GFF6614 0.48 -0.2 57,382 - GFF6614 0.48 +3.1 57,382 - GFF6614 0.48 -0.0 57,393 + GFF6614 0.50 -0.8 57,393 + GFF6614 0.50 -0.6 57,393 + GFF6614 0.50 -0.2 57,394 - GFF6614 0.50 -1.4 57,394 - GFF6614 0.50 -1.1 57,394 - GFF6614 0.50 -0.4 57,394 - GFF6614 0.50 +0.5 57,531 - GFF6614 0.71 -0.5 57,621 + GFF6614 0.85 +0.5 57,622 - GFF6614 0.85 -0.6 57,711 + -0.5 57,711 + +0.2 57,712 - -1.2 57,712 - -0.8 57,732 + +0.1 57,732 + +0.1 57,732 + -1.3 57,732 + -1.5 57,733 - -1.0 57,733 - -0.3 57,733 - +0.0 57,733 - -0.6 57,733 - +0.1 57,733 - -0.3 57,733 - -0.1 57,733 - -0.2 57,733 - -0.0 57,734 + -1.1 57,734 + +0.5 57,734 + -0.0 57,734 + +0.0 57,735 - -0.7 57,735 - +0.2 57,735 - -0.3 57,839 + -0.8 57,839 + -1.2 57,839 + +1.1 57,839 + +0.3 57,840 - +0.8 57,840 - -1.6 57,926 + +0.0 57,926 + -0.5 57,926 + -0.5 57,926 + -0.2 57,927 - +1.1 57,930 + -0.5 57,930 + -0.5 57,931 - -1.0 58,259 + -1.0 58,259 + -0.4 58,260 - +0.5 58,260 - -0.4 58,260 - -0.0 58,611 + GFF6615 0.12 +0.0 58,611 + GFF6615 0.12 -0.0 58,655 + GFF6615 0.14 +1.2 58,656 - GFF6615 0.14 -0.0
Or see this region's nucleotide sequence