Strain Fitness in Variovorax sp. SCN45 around GFF6564

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6563 and GFF6564 overlap by 4 nucleotidesGFF6564 and GFF6565 are separated by 300 nucleotides GFF6563 - no description, at 85 to 945 GFF6563 GFF6564 - hypothetical protein, at 942 to 3,197 GFF6564 GFF6565 - hypothetical protein, at 3,498 to 4,742 GFF6565 Position (kb) 0 1 2 3 4Strain fitness (log2 ratio) -2 -1 0 1 2at 0.100 kb on + strandat 0.100 kb on + strandat 0.100 kb on + strandat 0.101 kb on - strandat 0.101 kb on - strandat 0.101 kb on - strandat 0.123 kb on - strandat 0.150 kb on - strandat 0.248 kb on + strand, within GFF6563at 0.248 kb on + strand, within GFF6563at 0.248 kb on + strand, within GFF6563at 0.248 kb on + strand, within GFF6563at 0.249 kb on - strand, within GFF6563at 0.249 kb on - strand, within GFF6563at 0.398 kb on + strand, within GFF6563at 0.398 kb on + strand, within GFF6563at 0.398 kb on + strand, within GFF6563at 0.399 kb on - strand, within GFF6563at 0.399 kb on - strand, within GFF6563at 0.541 kb on + strand, within GFF6563at 0.655 kb on + strand, within GFF6563at 0.656 kb on - strand, within GFF6563at 0.656 kb on - strand, within GFF6563at 0.656 kb on - strand, within GFF6563at 0.656 kb on - strand, within GFF6563at 0.656 kb on - strand, within GFF6563at 0.871 kb on + strandat 0.872 kb on - strandat 0.878 kb on + strandat 0.878 kb on + strandat 0.878 kb on + strandat 0.879 kb on - strandat 0.879 kb on - strandat 0.879 kb on - strandat 0.879 kb on - strandat 0.879 kb on - strandat 0.879 kb on - strandat 0.883 kb on - strandat 1.054 kb on + strandat 1.054 kb on + strandat 1.055 kb on - strandat 1.055 kb on - strandat 1.084 kb on - strandat 1.120 kb on + strandat 1.120 kb on + strandat 1.120 kb on + strandat 1.121 kb on - strandat 1.121 kb on - strandat 1.121 kb on - strandat 1.121 kb on - strandat 1.121 kb on - strandat 1.123 kb on + strandat 1.123 kb on + strandat 1.124 kb on - strandat 1.124 kb on - strandat 1.124 kb on - strandat 1.124 kb on - strandat 1.130 kb on + strandat 1.130 kb on + strandat 1.131 kb on - strandat 1.150 kb on + strandat 1.150 kb on + strandat 1.150 kb on + strandat 1.151 kb on - strandat 1.325 kb on + strand, within GFF6564at 1.326 kb on - strand, within GFF6564at 1.340 kb on + strand, within GFF6564at 1.341 kb on - strand, within GFF6564at 1.341 kb on - strand, within GFF6564at 1.341 kb on - strand, within GFF6564at 1.341 kb on - strand, within GFF6564at 1.371 kb on + strand, within GFF6564at 1.402 kb on - strand, within GFF6564at 1.419 kb on + strand, within GFF6564at 1.419 kb on + strand, within GFF6564at 1.420 kb on - strand, within GFF6564at 1.586 kb on + strand, within GFF6564at 1.587 kb on - strand, within GFF6564at 1.823 kb on + strand, within GFF6564at 1.823 kb on + strand, within GFF6564at 1.823 kb on + strand, within GFF6564at 1.824 kb on - strand, within GFF6564at 1.824 kb on - strand, within GFF6564at 1.847 kb on + strand, within GFF6564at 1.848 kb on - strand, within GFF6564at 1.881 kb on + strand, within GFF6564at 1.882 kb on - strand, within GFF6564at 1.934 kb on - strand, within GFF6564at 2.149 kb on - strand, within GFF6564at 2.149 kb on - strand, within GFF6564at 2.149 kb on - strand, within GFF6564at 2.223 kb on + strand, within GFF6564at 2.223 kb on + strand, within GFF6564at 2.223 kb on + strand, within GFF6564at 2.224 kb on - strand, within GFF6564at 2.224 kb on - strand, within GFF6564at 2.243 kb on + strand, within GFF6564at 2.261 kb on - strand, within GFF6564at 2.267 kb on + strand, within GFF6564at 2.289 kb on + strand, within GFF6564at 2.290 kb on - strand, within GFF6564at 2.290 kb on - strand, within GFF6564at 2.290 kb on - strand, within GFF6564at 2.381 kb on + strand, within GFF6564at 2.381 kb on + strand, within GFF6564at 2.382 kb on - strand, within GFF6564at 2.382 kb on - strand, within GFF6564at 2.451 kb on + strand, within GFF6564at 2.452 kb on - strand, within GFF6564at 2.452 kb on - strand, within GFF6564at 2.452 kb on - strand, within GFF6564at 2.580 kb on + strand, within GFF6564at 2.581 kb on - strand, within GFF6564at 2.581 kb on - strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.746 kb on - strand, within GFF6564at 2.746 kb on - strand, within GFF6564at 2.746 kb on - strand, within GFF6564at 2.746 kb on - strand, within GFF6564at 2.746 kb on - strand, within GFF6564at 2.746 kb on - strand, within GFF6564at 2.746 kb on - strand, within GFF6564at 2.748 kb on - strand, within GFF6564at 2.748 kb on - strand, within GFF6564at 2.748 kb on - strand, within GFF6564at 2.845 kb on - strand, within GFF6564at 2.848 kb on + strand, within GFF6564at 2.849 kb on - strand, within GFF6564at 2.849 kb on - strand, within GFF6564at 2.849 kb on - strand, within GFF6564at 2.849 kb on - strand, within GFF6564at 2.849 kb on - strand, within GFF6564at 2.982 kb on + strandat 2.982 kb on + strandat 2.983 kb on - strandat 2.983 kb on - strandat 3.025 kb on - strandat 3.063 kb on + strandat 3.063 kb on + strandat 3.064 kb on - strandat 3.064 kb on - strandat 3.067 kb on + strandat 3.068 kb on - strandat 3.102 kb on + strandat 3.102 kb on + strandat 3.103 kb on - strandat 3.103 kb on - strandat 3.103 kb on - strandat 3.103 kb on - strandat 3.103 kb on - strandat 3.103 kb on - strandat 3.349 kb on + strandat 3.350 kb on - strandat 3.350 kb on - strandat 3.350 kb on - strandat 3.350 kb on - strandat 3.350 kb on - strandat 3.350 kb on - strandat 3.377 kb on - strandat 3.426 kb on + strandat 3.529 kb on + strandat 3.529 kb on + strandat 3.530 kb on - strandat 3.530 kb on - strandat 3.530 kb on - strandat 3.530 kb on - strandat 3.651 kb on + strand, within GFF6565at 3.651 kb on + strand, within GFF6565at 3.651 kb on + strand, within GFF6565at 3.651 kb on + strand, within GFF6565at 3.651 kb on + strand, within GFF6565at 3.651 kb on + strand, within GFF6565at 3.651 kb on + strand, within GFF6565at 3.652 kb on - strand, within GFF6565at 3.652 kb on - strand, within GFF6565at 3.705 kb on + strand, within GFF6565at 3.714 kb on + strand, within GFF6565at 3.714 kb on + strand, within GFF6565at 3.846 kb on - strand, within GFF6565at 4.150 kb on - strand, within GFF6565at 4.150 kb on - strand, within GFF6565at 4.166 kb on - strand, within GFF6565

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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100 + -0.0
100 + +0.8
100 + -0.3
101 - -0.3
101 - -0.2
101 - -0.3
123 - -0.6
150 - -0.2
248 + GFF6563 0.19 -0.0
248 + GFF6563 0.19 -0.3
248 + GFF6563 0.19 +0.2
248 + GFF6563 0.19 -0.5
249 - GFF6563 0.19 -0.4
249 - GFF6563 0.19 -0.6
398 + GFF6563 0.36 +0.1
398 + GFF6563 0.36 -0.5
398 + GFF6563 0.36 -1.1
399 - GFF6563 0.36 -0.0
399 - GFF6563 0.36 +0.2
541 + GFF6563 0.53 -0.6
655 + GFF6563 0.66 -0.2
656 - GFF6563 0.66 +1.1
656 - GFF6563 0.66 -0.2
656 - GFF6563 0.66 -0.6
656 - GFF6563 0.66 +0.5
656 - GFF6563 0.66 -0.8
871 + +0.7
872 - -0.7
878 + -0.7
878 + +1.0
878 + -1.0
879 - -0.2
879 - +1.1
879 - -0.5
879 - +0.3
879 - +0.1
879 - +0.2
883 - -0.2
1,054 + +0.8
1,054 + +0.1
1,055 - -1.3
1,055 - +0.6
1,084 - -0.3
1,120 + -0.4
1,120 + -2.3
1,120 + -0.5
1,121 - +0.4
1,121 - -0.5
1,121 - +0.5
1,121 - -0.4
1,121 - +0.5
1,123 + -0.2
1,123 + -1.0
1,124 - +0.7
1,124 - +1.4
1,124 - -0.6
1,124 - -0.0
1,130 + -0.6
1,130 + -0.2
1,131 - -0.6
1,150 + -0.6
1,150 + +0.3
1,150 + +0.4
1,151 - -0.7
1,325 + GFF6564 0.17 -1.3
1,326 - GFF6564 0.17 +0.8
1,340 + GFF6564 0.18 -1.5
1,341 - GFF6564 0.18 -0.5
1,341 - GFF6564 0.18 +2.2
1,341 - GFF6564 0.18 -0.0
1,341 - GFF6564 0.18 -0.1
1,371 + GFF6564 0.19 -0.2
1,402 - GFF6564 0.20 +0.8
1,419 + GFF6564 0.21 +0.8
1,419 + GFF6564 0.21 -0.0
1,420 - GFF6564 0.21 +0.1
1,586 + GFF6564 0.29 +0.1
1,587 - GFF6564 0.29 -0.6
1,823 + GFF6564 0.39 -0.4
1,823 + GFF6564 0.39 -0.1
1,823 + GFF6564 0.39 -0.1
1,824 - GFF6564 0.39 +0.1
1,824 - GFF6564 0.39 +0.3
1,847 + GFF6564 0.40 -0.2
1,848 - GFF6564 0.40 +0.7
1,881 + GFF6564 0.42 +0.2
1,882 - GFF6564 0.42 -0.2
1,934 - GFF6564 0.44 -0.3
2,149 - GFF6564 0.54 -0.8
2,149 - GFF6564 0.54 -0.5
2,149 - GFF6564 0.54 -0.1
2,223 + GFF6564 0.57 +0.0
2,223 + GFF6564 0.57 +0.3
2,223 + GFF6564 0.57 +0.8
2,224 - GFF6564 0.57 -0.7
2,224 - GFF6564 0.57 -0.7
2,243 + GFF6564 0.58 -0.3
2,261 - GFF6564 0.58 -0.0
2,267 + GFF6564 0.59 +0.4
2,289 + GFF6564 0.60 -1.9
2,290 - GFF6564 0.60 -0.0
2,290 - GFF6564 0.60 -1.5
2,290 - GFF6564 0.60 -1.4
2,381 + GFF6564 0.64 -1.4
2,381 + GFF6564 0.64 -0.6
2,382 - GFF6564 0.64 -0.8
2,382 - GFF6564 0.64 -0.1
2,451 + GFF6564 0.67 -0.1
2,452 - GFF6564 0.67 -1.2
2,452 - GFF6564 0.67 -1.0
2,452 - GFF6564 0.67 -0.0
2,580 + GFF6564 0.73 +1.0
2,581 - GFF6564 0.73 -0.5
2,581 - GFF6564 0.73 -0.8
2,745 + GFF6564 0.80 -0.9
2,745 + GFF6564 0.80 -0.0
2,745 + GFF6564 0.80 -1.2
2,745 + GFF6564 0.80 -0.9
2,745 + GFF6564 0.80 -0.8
2,745 + GFF6564 0.80 -0.8
2,745 + GFF6564 0.80 +0.5
2,745 + GFF6564 0.80 +0.6
2,745 + GFF6564 0.80 +0.4
2,746 - GFF6564 0.80 +0.2
2,746 - GFF6564 0.80 -0.1
2,746 - GFF6564 0.80 +0.0
2,746 - GFF6564 0.80 +1.3
2,746 - GFF6564 0.80 +0.1
2,746 - GFF6564 0.80 -1.5
2,746 - GFF6564 0.80 -1.5
2,748 - GFF6564 0.80 -0.3
2,748 - GFF6564 0.80 -0.3
2,748 - GFF6564 0.80 -1.3
2,845 - GFF6564 0.84 -1.0
2,848 + GFF6564 0.84 +0.1
2,849 - GFF6564 0.85 -2.4
2,849 - GFF6564 0.85 -0.7
2,849 - GFF6564 0.85 +0.5
2,849 - GFF6564 0.85 +0.4
2,849 - GFF6564 0.85 -1.5
2,982 + -1.5
2,982 + +0.7
2,983 - -0.8
2,983 - +0.0
3,025 - -0.3
3,063 + -0.6
3,063 + +0.8
3,064 - +0.9
3,064 - +1.1
3,067 + +1.1
3,068 - -1.3
3,102 + -0.8
3,102 + -0.0
3,103 - -1.4
3,103 - -0.0
3,103 - -0.5
3,103 - -1.8
3,103 - -0.3
3,103 - -1.8
3,349 + -0.2
3,350 - -0.3
3,350 - -0.5
3,350 - -0.6
3,350 - -0.3
3,350 - +0.8
3,350 - +0.7
3,377 - +0.0
3,426 + -0.5
3,529 + -0.3
3,529 + -0.7
3,530 - +0.0
3,530 - +0.1
3,530 - +0.7
3,530 - -1.4
3,651 + GFF6565 0.12 -0.0
3,651 + GFF6565 0.12 +0.2
3,651 + GFF6565 0.12 +1.2
3,651 + GFF6565 0.12 -0.6
3,651 + GFF6565 0.12 +0.4
3,651 + GFF6565 0.12 -0.5
3,651 + GFF6565 0.12 -0.4
3,652 - GFF6565 0.12 -0.6
3,652 - GFF6565 0.12 -1.6
3,705 + GFF6565 0.17 +0.3
3,714 + GFF6565 0.17 -0.2
3,714 + GFF6565 0.17 +0.7
3,846 - GFF6565 0.28 +0.1
4,150 - GFF6565 0.52 +0.8
4,150 - GFF6565 0.52 -0.3
4,166 - GFF6565 0.54 -0.2

Or see this region's nucleotide sequence