Strain Fitness in Variovorax sp. SCN45 around GFF655

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF653 and GFF654 are separated by 156 nucleotidesGFF654 and GFF655 are separated by 18 nucleotidesGFF655 and GFF656 are separated by 14 nucleotides GFF653 - no description, at 704,902 to 705,318 GFF653 GFF654 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 705,475 to 706,236 GFF654 GFF655 - hypothetical protein, at 706,255 to 706,674 GFF655 GFF656 - macromolecule metabolism; macromolecule degradation; degradation of proteins, peptides, glycopeptides, at 706,689 to 708,935 GFF656 Position (kb) 706 707Strain fitness (log2 ratio) -2 -1 0 1 2 3at 705.357 kb on + strandat 705.357 kb on + strandat 705.358 kb on - strandat 705.397 kb on + strandat 705.397 kb on + strandat 705.397 kb on + strandat 705.398 kb on - strandat 705.398 kb on - strandat 705.398 kb on - strandat 705.398 kb on - strandat 705.398 kb on - strandat 705.398 kb on - strandat 705.413 kb on + strandat 705.413 kb on + strandat 705.413 kb on + strandat 705.414 kb on - strandat 705.414 kb on - strandat 705.793 kb on + strand, within GFF654at 705.793 kb on + strand, within GFF654at 705.793 kb on + strand, within GFF654at 705.793 kb on + strand, within GFF654at 705.794 kb on - strand, within GFF654at 705.794 kb on - strand, within GFF654at 705.794 kb on - strand, within GFF654at 705.794 kb on - strand, within GFF654at 705.814 kb on + strand, within GFF654at 705.815 kb on - strand, within GFF654at 705.815 kb on - strand, within GFF654at 705.815 kb on - strand, within GFF654at 705.901 kb on + strand, within GFF654at 705.901 kb on + strand, within GFF654at 706.243 kb on + strandat 706.265 kb on + strandat 706.265 kb on + strandat 706.266 kb on - strandat 706.289 kb on + strandat 706.500 kb on - strand, within GFF655at 706.500 kb on - strand, within GFF655at 706.500 kb on - strand, within GFF655at 706.562 kb on + strand, within GFF655at 706.563 kb on - strand, within GFF655at 706.563 kb on - strand, within GFF655at 706.563 kb on - strand, within GFF655at 706.563 kb on - strand, within GFF655at 706.699 kb on + strandat 706.747 kb on + strandat 706.748 kb on - strandat 706.856 kb on - strandat 706.984 kb on + strand, within GFF656at 706.984 kb on + strand, within GFF656at 706.985 kb on - strand, within GFF656at 706.996 kb on + strand, within GFF656at 706.996 kb on + strand, within GFF656at 706.996 kb on + strand, within GFF656at 706.997 kb on - strand, within GFF656at 706.997 kb on - strand, within GFF656at 706.997 kb on - strand, within GFF656at 706.997 kb on - strand, within GFF656at 706.999 kb on + strand, within GFF656at 706.999 kb on + strand, within GFF656at 706.999 kb on + strand, within GFF656at 706.999 kb on + strand, within GFF656at 707.000 kb on - strand, within GFF656at 707.000 kb on - strand, within GFF656at 707.000 kb on - strand, within GFF656at 707.188 kb on + strand, within GFF656at 707.188 kb on + strand, within GFF656at 707.188 kb on + strand, within GFF656at 707.188 kb on + strand, within GFF656at 707.189 kb on - strand, within GFF656at 707.189 kb on - strand, within GFF656at 707.189 kb on - strand, within GFF656at 707.189 kb on - strand, within GFF656at 707.189 kb on - strand, within GFF656at 707.341 kb on + strand, within GFF656at 707.342 kb on - strand, within GFF656at 707.342 kb on - strand, within GFF656at 707.342 kb on - strand, within GFF656at 707.342 kb on - strand, within GFF656at 707.353 kb on + strand, within GFF656at 707.353 kb on + strand, within GFF656at 707.353 kb on + strand, within GFF656at 707.354 kb on - strand, within GFF656at 707.392 kb on + strand, within GFF656at 707.392 kb on + strand, within GFF656at 707.392 kb on + strand, within GFF656at 707.393 kb on - strand, within GFF656at 707.431 kb on + strand, within GFF656at 707.432 kb on - strand, within GFF656at 707.548 kb on + strand, within GFF656at 707.549 kb on - strand, within GFF656at 707.549 kb on - strand, within GFF656at 707.549 kb on - strand, within GFF656at 707.563 kb on + strand, within GFF656at 707.563 kb on + strand, within GFF656at 707.563 kb on + strand, within GFF656at 707.563 kb on + strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.566 kb on + strand, within GFF656

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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705,357 + +1.5
705,357 + -0.8
705,358 - -0.5
705,397 + +0.3
705,397 + +0.1
705,397 + -1.0
705,398 - -0.3
705,398 - +0.4
705,398 - +3.1
705,398 - -0.5
705,398 - +0.7
705,398 - +0.5
705,413 + +0.1
705,413 + -0.1
705,413 + -0.2
705,414 - +0.6
705,414 - +0.2
705,793 + GFF654 0.42 +0.8
705,793 + GFF654 0.42 +0.3
705,793 + GFF654 0.42 -0.7
705,793 + GFF654 0.42 -0.5
705,794 - GFF654 0.42 +0.1
705,794 - GFF654 0.42 -1.0
705,794 - GFF654 0.42 -0.9
705,794 - GFF654 0.42 +0.5
705,814 + GFF654 0.44 -0.2
705,815 - GFF654 0.45 +0.2
705,815 - GFF654 0.45 +0.6
705,815 - GFF654 0.45 +0.3
705,901 + GFF654 0.56 -0.8
705,901 + GFF654 0.56 +0.1
706,243 + +1.0
706,265 + +0.1
706,265 + -1.0
706,266 - -0.5
706,289 + +0.3
706,500 - GFF655 0.58 +0.1
706,500 - GFF655 0.58 -0.3
706,500 - GFF655 0.58 -0.8
706,562 + GFF655 0.73 -0.1
706,563 - GFF655 0.73 -0.1
706,563 - GFF655 0.73 -0.2
706,563 - GFF655 0.73 +1.4
706,563 - GFF655 0.73 +0.8
706,699 + +0.2
706,747 + -0.6
706,748 - +0.8
706,856 - +0.5
706,984 + GFF656 0.13 -0.0
706,984 + GFF656 0.13 -0.1
706,985 - GFF656 0.13 -0.5
706,996 + GFF656 0.14 -1.0
706,996 + GFF656 0.14 +0.4
706,996 + GFF656 0.14 -1.8
706,997 - GFF656 0.14 -0.5
706,997 - GFF656 0.14 +1.8
706,997 - GFF656 0.14 -1.2
706,997 - GFF656 0.14 +0.6
706,999 + GFF656 0.14 -1.2
706,999 + GFF656 0.14 -0.2
706,999 + GFF656 0.14 +0.2
706,999 + GFF656 0.14 +1.8
707,000 - GFF656 0.14 +1.0
707,000 - GFF656 0.14 +1.1
707,000 - GFF656 0.14 +0.8
707,188 + GFF656 0.22 -0.2
707,188 + GFF656 0.22 -0.5
707,188 + GFF656 0.22 -0.5
707,188 + GFF656 0.22 +0.2
707,189 - GFF656 0.22 -2.1
707,189 - GFF656 0.22 +0.1
707,189 - GFF656 0.22 +1.4
707,189 - GFF656 0.22 +0.1
707,189 - GFF656 0.22 -1.7
707,341 + GFF656 0.29 -1.0
707,342 - GFF656 0.29 -0.4
707,342 - GFF656 0.29 +0.1
707,342 - GFF656 0.29 -0.8
707,342 - GFF656 0.29 +1.0
707,353 + GFF656 0.30 -0.7
707,353 + GFF656 0.30 +0.3
707,353 + GFF656 0.30 +0.2
707,354 - GFF656 0.30 +0.2
707,392 + GFF656 0.31 +0.4
707,392 + GFF656 0.31 -0.0
707,392 + GFF656 0.31 -0.7
707,393 - GFF656 0.31 +0.6
707,431 + GFF656 0.33 +0.1
707,432 - GFF656 0.33 -0.0
707,548 + GFF656 0.38 -2.0
707,549 - GFF656 0.38 +2.5
707,549 - GFF656 0.38 +0.4
707,549 - GFF656 0.38 +1.2
707,563 + GFF656 0.39 -0.4
707,563 + GFF656 0.39 -0.5
707,563 + GFF656 0.39 -0.4
707,563 + GFF656 0.39 +0.5
707,564 - GFF656 0.39 -0.2
707,564 - GFF656 0.39 -0.4
707,564 - GFF656 0.39 +1.2
707,564 - GFF656 0.39 -0.4
707,564 - GFF656 0.39 -0.3
707,564 - GFF656 0.39 +0.8
707,564 - GFF656 0.39 -0.9
707,566 + GFF656 0.39 -0.4

Or see this region's nucleotide sequence