Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF652 and GFF653 overlap by 4 nucleotides GFF653 and GFF654 are separated by 156 nucleotides GFF654 and GFF655 are separated by 18 nucleotides GFF655 and GFF656 are separated by 14 nucleotides
GFF652 - bacteriophytochrome heme oxygenase BphO, at 704,267 to 704,905
GFF652
GFF653 - no description, at 704,902 to 705,318
GFF653
GFF654 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 705,475 to 706,236
GFF654
GFF655 - hypothetical protein, at 706,255 to 706,674
GFF655
GFF656 - macromolecule metabolism; macromolecule degradation; degradation of proteins, peptides, glycopeptides, at 706,689 to 708,935
GFF656
Position (kb) 705
706
707 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.645 kb on + strand, within GFF652 at 704.646 kb on - strand, within GFF652 at 704.778 kb on + strand, within GFF652 at 704.779 kb on - strand, within GFF652 at 704.779 kb on - strand, within GFF652 at 704.779 kb on - strand, within GFF652 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.357 kb on + strand at 705.357 kb on + strand at 705.358 kb on - strand at 705.397 kb on + strand at 705.397 kb on + strand at 705.397 kb on + strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.413 kb on + strand at 705.413 kb on + strand at 705.413 kb on + strand at 705.414 kb on - strand at 705.414 kb on - strand at 705.793 kb on + strand, within GFF654 at 705.793 kb on + strand, within GFF654 at 705.793 kb on + strand, within GFF654 at 705.793 kb on + strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.814 kb on + strand, within GFF654 at 705.815 kb on - strand, within GFF654 at 705.815 kb on - strand, within GFF654 at 705.815 kb on - strand, within GFF654 at 705.901 kb on + strand, within GFF654 at 705.901 kb on + strand, within GFF654 at 706.243 kb on + strand at 706.265 kb on + strand at 706.265 kb on + strand at 706.266 kb on - strand at 706.289 kb on + strand at 706.500 kb on - strand, within GFF655 at 706.500 kb on - strand, within GFF655 at 706.500 kb on - strand, within GFF655 at 706.562 kb on + strand, within GFF655 at 706.563 kb on - strand, within GFF655 at 706.563 kb on - strand, within GFF655 at 706.563 kb on - strand, within GFF655 at 706.563 kb on - strand, within GFF655 at 706.699 kb on + strand at 706.747 kb on + strand at 706.748 kb on - strand at 706.856 kb on - strand at 706.984 kb on + strand, within GFF656 at 706.984 kb on + strand, within GFF656 at 706.985 kb on - strand, within GFF656 at 706.996 kb on + strand, within GFF656 at 706.996 kb on + strand, within GFF656 at 706.996 kb on + strand, within GFF656 at 706.997 kb on - strand, within GFF656 at 706.997 kb on - strand, within GFF656 at 706.997 kb on - strand, within GFF656 at 706.997 kb on - strand, within GFF656 at 706.999 kb on + strand, within GFF656 at 706.999 kb on + strand, within GFF656 at 706.999 kb on + strand, within GFF656 at 706.999 kb on + strand, within GFF656 at 707.000 kb on - strand, within GFF656 at 707.000 kb on - strand, within GFF656 at 707.000 kb on - strand, within GFF656 at 707.188 kb on + strand, within GFF656 at 707.188 kb on + strand, within GFF656 at 707.188 kb on + strand, within GFF656 at 707.188 kb on + strand, within GFF656 at 707.189 kb on - strand, within GFF656 at 707.189 kb on - strand, within GFF656 at 707.189 kb on - strand, within GFF656 at 707.189 kb on - strand, within GFF656 at 707.189 kb on - strand, within GFF656
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 704,521 - GFF652 0.40 -0.5 704,521 - GFF652 0.40 -0.8 704,521 - GFF652 0.40 -0.6 704,521 - GFF652 0.40 -0.8 704,521 - GFF652 0.40 -0.2 704,645 + GFF652 0.59 +0.4 704,646 - GFF652 0.59 +1.2 704,778 + GFF652 0.80 -0.2 704,779 - GFF652 0.80 -0.4 704,779 - GFF652 0.80 -1.8 704,779 - GFF652 0.80 +0.5 705,059 + GFF653 0.38 +1.8 705,059 + GFF653 0.38 +1.3 705,059 + GFF653 0.38 -0.4 705,059 + GFF653 0.38 -0.1 705,059 + GFF653 0.38 +0.1 705,060 - GFF653 0.38 -1.0 705,060 - GFF653 0.38 -0.1 705,060 - GFF653 0.38 -0.7 705,060 - GFF653 0.38 -0.7 705,357 + +1.5 705,357 + -0.8 705,358 - -0.5 705,397 + +0.3 705,397 + +0.1 705,397 + -1.0 705,398 - -0.3 705,398 - +0.4 705,398 - +3.1 705,398 - -0.5 705,398 - +0.7 705,398 - +0.5 705,413 + +0.1 705,413 + -0.1 705,413 + -0.2 705,414 - +0.6 705,414 - +0.2 705,793 + GFF654 0.42 +0.8 705,793 + GFF654 0.42 +0.3 705,793 + GFF654 0.42 -0.7 705,793 + GFF654 0.42 -0.5 705,794 - GFF654 0.42 +0.1 705,794 - GFF654 0.42 -1.0 705,794 - GFF654 0.42 -0.9 705,794 - GFF654 0.42 +0.5 705,814 + GFF654 0.44 -0.2 705,815 - GFF654 0.45 +0.2 705,815 - GFF654 0.45 +0.6 705,815 - GFF654 0.45 +0.3 705,901 + GFF654 0.56 -0.8 705,901 + GFF654 0.56 +0.1 706,243 + +1.0 706,265 + +0.1 706,265 + -1.0 706,266 - -0.5 706,289 + +0.3 706,500 - GFF655 0.58 +0.1 706,500 - GFF655 0.58 -0.3 706,500 - GFF655 0.58 -0.8 706,562 + GFF655 0.73 -0.1 706,563 - GFF655 0.73 -0.1 706,563 - GFF655 0.73 -0.2 706,563 - GFF655 0.73 +1.4 706,563 - GFF655 0.73 +0.8 706,699 + +0.2 706,747 + -0.6 706,748 - +0.8 706,856 - +0.5 706,984 + GFF656 0.13 -0.0 706,984 + GFF656 0.13 -0.1 706,985 - GFF656 0.13 -0.5 706,996 + GFF656 0.14 -1.0 706,996 + GFF656 0.14 +0.4 706,996 + GFF656 0.14 -1.8 706,997 - GFF656 0.14 -0.5 706,997 - GFF656 0.14 +1.8 706,997 - GFF656 0.14 -1.2 706,997 - GFF656 0.14 +0.6 706,999 + GFF656 0.14 -1.2 706,999 + GFF656 0.14 -0.2 706,999 + GFF656 0.14 +0.2 706,999 + GFF656 0.14 +1.8 707,000 - GFF656 0.14 +1.0 707,000 - GFF656 0.14 +1.1 707,000 - GFF656 0.14 +0.8 707,188 + GFF656 0.22 -0.2 707,188 + GFF656 0.22 -0.5 707,188 + GFF656 0.22 -0.5 707,188 + GFF656 0.22 +0.2 707,189 - GFF656 0.22 -2.1 707,189 - GFF656 0.22 +0.1 707,189 - GFF656 0.22 +1.4 707,189 - GFF656 0.22 +0.1 707,189 - GFF656 0.22 -1.7
Or see this region's nucleotide sequence