Strain Fitness in Variovorax sp. SCN45 around GFF6538

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6537 and GFF6538 are separated by 100 nucleotidesGFF6538 and GFF6539 overlap by 13 nucleotides GFF6537 - hypothetical protein, at 33,185 to 34,024 GFF6537 GFF6538 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 34,125 to 35,753 GFF6538 GFF6539 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 35,741 to 37,291 GFF6539 Position (kb) 34 35 36Strain fitness (log2 ratio) -2 -1 0 1 2at 33.157 kb on + strandat 33.158 kb on - strandat 33.158 kb on - strandat 33.335 kb on + strand, within GFF6537at 33.335 kb on + strand, within GFF6537at 33.335 kb on + strand, within GFF6537at 33.335 kb on + strand, within GFF6537at 33.377 kb on + strand, within GFF6537at 33.479 kb on + strand, within GFF6537at 33.479 kb on + strand, within GFF6537at 33.480 kb on - strand, within GFF6537at 33.480 kb on - strand, within GFF6537at 33.482 kb on + strand, within GFF6537at 33.482 kb on + strand, within GFF6537at 33.482 kb on + strand, within GFF6537at 33.482 kb on + strand, within GFF6537at 33.482 kb on + strand, within GFF6537at 33.482 kb on + strand, within GFF6537at 33.482 kb on + strand, within GFF6537at 33.482 kb on + strand, within GFF6537at 33.483 kb on - strand, within GFF6537at 33.483 kb on - strand, within GFF6537at 33.488 kb on + strand, within GFF6537at 33.488 kb on + strand, within GFF6537at 33.488 kb on + strand, within GFF6537at 33.488 kb on + strand, within GFF6537at 33.488 kb on + strand, within GFF6537at 33.489 kb on - strand, within GFF6537at 33.489 kb on - strand, within GFF6537at 33.501 kb on - strand, within GFF6537at 33.605 kb on + strand, within GFF6537at 33.605 kb on + strand, within GFF6537at 33.605 kb on + strand, within GFF6537at 33.606 kb on - strand, within GFF6537at 33.662 kb on + strand, within GFF6537at 33.663 kb on - strand, within GFF6537at 33.665 kb on + strand, within GFF6537at 33.665 kb on + strand, within GFF6537at 33.722 kb on + strand, within GFF6537at 33.722 kb on + strand, within GFF6537at 33.722 kb on + strand, within GFF6537at 33.723 kb on - strand, within GFF6537at 33.723 kb on - strand, within GFF6537at 33.723 kb on - strand, within GFF6537at 33.860 kb on + strand, within GFF6537at 33.860 kb on + strand, within GFF6537at 33.860 kb on + strand, within GFF6537at 33.860 kb on + strand, within GFF6537at 33.860 kb on + strand, within GFF6537at 33.860 kb on + strand, within GFF6537at 33.861 kb on - strand, within GFF6537at 33.861 kb on - strand, within GFF6537at 33.861 kb on - strand, within GFF6537at 33.920 kb on + strand, within GFF6537at 33.921 kb on - strand, within GFF6537at 33.921 kb on - strand, within GFF6537at 34.023 kb on - strandat 34.084 kb on + strandat 34.474 kb on - strand, within GFF6538at 34.474 kb on - strand, within GFF6538at 34.619 kb on + strand, within GFF6538at 34.619 kb on + strand, within GFF6538at 34.619 kb on + strand, within GFF6538at 34.619 kb on + strand, within GFF6538at 34.619 kb on + strand, within GFF6538at 34.620 kb on - strand, within GFF6538at 34.620 kb on - strand, within GFF6538at 34.620 kb on - strand, within GFF6538at 34.620 kb on - strand, within GFF6538at 34.620 kb on - strand, within GFF6538at 34.701 kb on + strand, within GFF6538at 34.701 kb on + strand, within GFF6538at 34.701 kb on + strand, within GFF6538at 34.701 kb on + strand, within GFF6538at 34.701 kb on + strand, within GFF6538at 34.702 kb on - strand, within GFF6538at 34.702 kb on - strand, within GFF6538at 34.702 kb on - strand, within GFF6538at 34.983 kb on + strand, within GFF6538at 34.984 kb on - strand, within GFF6538at 34.984 kb on - strand, within GFF6538at 35.049 kb on + strand, within GFF6538at 35.050 kb on - strand, within GFF6538at 35.050 kb on - strand, within GFF6538at 35.050 kb on - strand, within GFF6538at 35.142 kb on + strand, within GFF6538at 35.142 kb on + strand, within GFF6538at 35.142 kb on + strand, within GFF6538at 35.197 kb on - strand, within GFF6538at 35.313 kb on + strand, within GFF6538at 35.313 kb on + strand, within GFF6538at 35.314 kb on - strand, within GFF6538at 35.316 kb on + strand, within GFF6538at 35.316 kb on + strand, within GFF6538at 35.317 kb on - strand, within GFF6538at 35.317 kb on - strand, within GFF6538at 35.479 kb on + strand, within GFF6538at 35.479 kb on + strand, within GFF6538at 35.480 kb on - strand, within GFF6538at 35.740 kb on - strandat 36.087 kb on + strand, within GFF6539at 36.087 kb on + strand, within GFF6539at 36.087 kb on + strand, within GFF6539at 36.088 kb on - strand, within GFF6539at 36.088 kb on - strand, within GFF6539at 36.088 kb on - strand, within GFF6539at 36.111 kb on + strand, within GFF6539at 36.177 kb on + strand, within GFF6539at 36.178 kb on - strand, within GFF6539at 36.178 kb on - strand, within GFF6539at 36.178 kb on - strand, within GFF6539at 36.180 kb on + strand, within GFF6539at 36.465 kb on + strand, within GFF6539at 36.466 kb on - strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.528 kb on + strand, within GFF6539at 36.529 kb on - strand, within GFF6539at 36.529 kb on - strand, within GFF6539at 36.529 kb on - strand, within GFF6539at 36.529 kb on - strand, within GFF6539at 36.693 kb on + strand, within GFF6539at 36.694 kb on - strand, within GFF6539at 36.717 kb on + strand, within GFF6539

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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33,157 + -0.4
33,158 - +1.1
33,158 - -0.1
33,335 + GFF6537 0.18 -0.3
33,335 + GFF6537 0.18 -0.1
33,335 + GFF6537 0.18 -1.1
33,335 + GFF6537 0.18 +0.1
33,377 + GFF6537 0.23 +0.2
33,479 + GFF6537 0.35 +0.6
33,479 + GFF6537 0.35 -0.1
33,480 - GFF6537 0.35 -0.7
33,480 - GFF6537 0.35 -0.4
33,482 + GFF6537 0.35 +0.1
33,482 + GFF6537 0.35 +0.6
33,482 + GFF6537 0.35 +0.6
33,482 + GFF6537 0.35 -0.8
33,482 + GFF6537 0.35 +0.7
33,482 + GFF6537 0.35 -0.4
33,482 + GFF6537 0.35 -0.0
33,482 + GFF6537 0.35 +0.2
33,483 - GFF6537 0.35 -1.2
33,483 - GFF6537 0.35 -0.0
33,488 + GFF6537 0.36 +0.8
33,488 + GFF6537 0.36 -1.5
33,488 + GFF6537 0.36 +0.6
33,488 + GFF6537 0.36 -0.9
33,488 + GFF6537 0.36 -0.8
33,489 - GFF6537 0.36 +0.0
33,489 - GFF6537 0.36 +1.0
33,501 - GFF6537 0.38 -1.0
33,605 + GFF6537 0.50 +1.1
33,605 + GFF6537 0.50 -1.0
33,605 + GFF6537 0.50 -0.3
33,606 - GFF6537 0.50 -0.3
33,662 + GFF6537 0.57 +0.0
33,663 - GFF6537 0.57 +1.2
33,665 + GFF6537 0.57 -0.6
33,665 + GFF6537 0.57 -0.4
33,722 + GFF6537 0.64 +0.1
33,722 + GFF6537 0.64 +0.3
33,722 + GFF6537 0.64 -0.8
33,723 - GFF6537 0.64 -1.2
33,723 - GFF6537 0.64 -0.1
33,723 - GFF6537 0.64 +0.8
33,860 + GFF6537 0.80 +0.4
33,860 + GFF6537 0.80 -0.3
33,860 + GFF6537 0.80 -0.7
33,860 + GFF6537 0.80 -0.3
33,860 + GFF6537 0.80 +2.3
33,860 + GFF6537 0.80 -0.2
33,861 - GFF6537 0.80 -0.6
33,861 - GFF6537 0.80 -0.5
33,861 - GFF6537 0.80 -0.8
33,920 + GFF6537 0.88 -2.4
33,921 - GFF6537 0.88 -0.3
33,921 - GFF6537 0.88 -0.4
34,023 - +1.1
34,084 + -0.4
34,474 - GFF6538 0.21 -0.1
34,474 - GFF6538 0.21 -0.4
34,619 + GFF6538 0.30 -0.1
34,619 + GFF6538 0.30 -0.1
34,619 + GFF6538 0.30 -1.0
34,619 + GFF6538 0.30 +0.3
34,619 + GFF6538 0.30 -0.5
34,620 - GFF6538 0.30 +0.2
34,620 - GFF6538 0.30 -1.1
34,620 - GFF6538 0.30 +0.6
34,620 - GFF6538 0.30 -0.2
34,620 - GFF6538 0.30 -0.2
34,701 + GFF6538 0.35 +1.6
34,701 + GFF6538 0.35 -1.3
34,701 + GFF6538 0.35 +1.6
34,701 + GFF6538 0.35 -0.4
34,701 + GFF6538 0.35 -0.6
34,702 - GFF6538 0.35 -1.5
34,702 - GFF6538 0.35 +1.2
34,702 - GFF6538 0.35 -0.0
34,983 + GFF6538 0.53 -0.3
34,984 - GFF6538 0.53 -0.5
34,984 - GFF6538 0.53 -0.9
35,049 + GFF6538 0.57 +0.2
35,050 - GFF6538 0.57 -1.0
35,050 - GFF6538 0.57 +1.2
35,050 - GFF6538 0.57 -0.5
35,142 + GFF6538 0.62 -0.8
35,142 + GFF6538 0.62 -0.5
35,142 + GFF6538 0.62 -0.4
35,197 - GFF6538 0.66 -0.3
35,313 + GFF6538 0.73 -0.6
35,313 + GFF6538 0.73 -0.8
35,314 - GFF6538 0.73 -0.9
35,316 + GFF6538 0.73 -1.6
35,316 + GFF6538 0.73 -0.7
35,317 - GFF6538 0.73 -0.6
35,317 - GFF6538 0.73 -1.0
35,479 + GFF6538 0.83 +0.8
35,479 + GFF6538 0.83 -0.9
35,480 - GFF6538 0.83 -0.4
35,740 - -0.7
36,087 + GFF6539 0.22 -1.7
36,087 + GFF6539 0.22 -1.2
36,087 + GFF6539 0.22 +0.8
36,088 - GFF6539 0.22 +0.2
36,088 - GFF6539 0.22 -0.1
36,088 - GFF6539 0.22 -0.8
36,111 + GFF6539 0.24 -1.2
36,177 + GFF6539 0.28 -0.9
36,178 - GFF6539 0.28 +0.6
36,178 - GFF6539 0.28 -0.7
36,178 - GFF6539 0.28 +0.4
36,180 + GFF6539 0.28 -2.0
36,465 + GFF6539 0.47 -0.6
36,466 - GFF6539 0.47 -0.2
36,528 + GFF6539 0.51 -0.6
36,528 + GFF6539 0.51 -0.6
36,528 + GFF6539 0.51 -0.2
36,528 + GFF6539 0.51 +0.0
36,528 + GFF6539 0.51 -1.6
36,528 + GFF6539 0.51 +0.1
36,528 + GFF6539 0.51 -0.0
36,528 + GFF6539 0.51 +0.5
36,528 + GFF6539 0.51 -0.4
36,528 + GFF6539 0.51 -1.0
36,528 + GFF6539 0.51 -1.6
36,528 + GFF6539 0.51 -0.6
36,529 - GFF6539 0.51 -2.2
36,529 - GFF6539 0.51 -1.0
36,529 - GFF6539 0.51 -0.5
36,529 - GFF6539 0.51 -0.4
36,693 + GFF6539 0.61 +0.6
36,694 - GFF6539 0.61 +0.1
36,717 + GFF6539 0.63 -1.0

Or see this region's nucleotide sequence