Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF651 and GFF652 are separated by 91 nucleotides GFF652 and GFF653 overlap by 4 nucleotides GFF653 and GFF654 are separated by 156 nucleotides GFF654 and GFF655 are separated by 18 nucleotides
GFF651 - Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-), at 701,887 to 704,175
GFF651
GFF652 - bacteriophytochrome heme oxygenase BphO, at 704,267 to 704,905
GFF652
GFF653 - no description, at 704,902 to 705,318
GFF653
GFF654 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 705,475 to 706,236
GFF654
GFF655 - hypothetical protein, at 706,255 to 706,674
GFF655
Position (kb) 704
705
706 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 704.216 kb on - strand at 704.216 kb on - strand at 704.216 kb on - strand at 704.268 kb on + strand at 704.268 kb on + strand at 704.268 kb on + strand at 704.268 kb on + strand at 704.269 kb on - strand at 704.269 kb on - strand at 704.269 kb on - strand at 704.269 kb on - strand at 704.440 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.645 kb on + strand, within GFF652 at 704.646 kb on - strand, within GFF652 at 704.778 kb on + strand, within GFF652 at 704.779 kb on - strand, within GFF652 at 704.779 kb on - strand, within GFF652 at 704.779 kb on - strand, within GFF652 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.357 kb on + strand at 705.357 kb on + strand at 705.358 kb on - strand at 705.397 kb on + strand at 705.397 kb on + strand at 705.397 kb on + strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.413 kb on + strand at 705.413 kb on + strand at 705.413 kb on + strand at 705.414 kb on - strand at 705.414 kb on - strand at 705.793 kb on + strand, within GFF654 at 705.793 kb on + strand, within GFF654 at 705.793 kb on + strand, within GFF654 at 705.793 kb on + strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.814 kb on + strand, within GFF654 at 705.815 kb on - strand, within GFF654 at 705.815 kb on - strand, within GFF654 at 705.815 kb on - strand, within GFF654 at 705.901 kb on + strand, within GFF654 at 705.901 kb on + strand, within GFF654 at 706.243 kb on + strand at 706.265 kb on + strand at 706.265 kb on + strand at 706.266 kb on - strand at 706.289 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 704,216 - +0.3 704,216 - +0.8 704,216 - +0.5 704,268 + +1.0 704,268 + -1.4 704,268 + -1.5 704,268 + +0.2 704,269 - -0.7 704,269 - +0.2 704,269 - +0.2 704,269 - +1.3 704,440 - GFF652 0.27 +0.4 704,521 - GFF652 0.40 -0.5 704,521 - GFF652 0.40 -0.8 704,521 - GFF652 0.40 -0.6 704,521 - GFF652 0.40 -0.8 704,521 - GFF652 0.40 -0.2 704,645 + GFF652 0.59 +0.4 704,646 - GFF652 0.59 +1.2 704,778 + GFF652 0.80 -0.2 704,779 - GFF652 0.80 -0.4 704,779 - GFF652 0.80 -1.8 704,779 - GFF652 0.80 +0.5 705,059 + GFF653 0.38 +1.8 705,059 + GFF653 0.38 +1.3 705,059 + GFF653 0.38 -0.4 705,059 + GFF653 0.38 -0.1 705,059 + GFF653 0.38 +0.1 705,060 - GFF653 0.38 -1.0 705,060 - GFF653 0.38 -0.1 705,060 - GFF653 0.38 -0.7 705,060 - GFF653 0.38 -0.7 705,357 + +1.5 705,357 + -0.8 705,358 - -0.5 705,397 + +0.3 705,397 + +0.1 705,397 + -1.0 705,398 - -0.3 705,398 - +0.4 705,398 - +3.1 705,398 - -0.5 705,398 - +0.7 705,398 - +0.5 705,413 + +0.1 705,413 + -0.1 705,413 + -0.2 705,414 - +0.6 705,414 - +0.2 705,793 + GFF654 0.42 +0.8 705,793 + GFF654 0.42 +0.3 705,793 + GFF654 0.42 -0.7 705,793 + GFF654 0.42 -0.5 705,794 - GFF654 0.42 +0.1 705,794 - GFF654 0.42 -1.0 705,794 - GFF654 0.42 -0.9 705,794 - GFF654 0.42 +0.5 705,814 + GFF654 0.44 -0.2 705,815 - GFF654 0.45 +0.2 705,815 - GFF654 0.45 +0.6 705,815 - GFF654 0.45 +0.3 705,901 + GFF654 0.56 -0.8 705,901 + GFF654 0.56 +0.1 706,243 + +1.0 706,265 + +0.1 706,265 + -1.0 706,266 - -0.5 706,289 + +0.3
Or see this region's nucleotide sequence