Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6454 and GFF6455 are separated by 176 nucleotides GFF6455 and GFF6456 are separated by 7 nucleotides GFF6456 and GFF6457 are separated by 57 nucleotides GFF6457 and GFF6458 overlap by 14 nucleotides
GFF6454 - Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit, at 31,967 to 32,713
GFF6454
GFF6455 - Bll3817 protein, at 32,890 to 33,474
GFF6455
GFF6456 - Lipid A phosphoethanolamine transferase, putative, at 33,482 to 35,233
GFF6456
GFF6457 - no description, at 35,291 to 35,872
GFF6457
GFF6458 - Lipid A 4'-phosphatase LpxF-like, putative, at 35,859 to 36,563
GFF6458
Position (kb) 33
34
35
36 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 32.529 kb on + strand, within GFF6454 at 32.529 kb on + strand, within GFF6454 at 32.529 kb on + strand, within GFF6454 at 32.541 kb on + strand, within GFF6454 at 32.541 kb on + strand, within GFF6454 at 32.542 kb on - strand, within GFF6454 at 32.542 kb on - strand, within GFF6454 at 32.542 kb on - strand, within GFF6454 at 32.542 kb on - strand, within GFF6454 at 32.697 kb on + strand at 32.698 kb on - strand at 32.719 kb on + strand at 32.720 kb on - strand at 32.720 kb on - strand at 32.720 kb on - strand at 32.720 kb on - strand at 32.787 kb on + strand at 32.787 kb on + strand at 32.787 kb on + strand at 32.787 kb on + strand at 32.787 kb on + strand at 32.788 kb on - strand at 32.788 kb on - strand at 32.788 kb on - strand at 32.788 kb on - strand at 32.788 kb on - strand at 32.788 kb on - strand at 32.788 kb on - strand at 32.804 kb on + strand at 32.804 kb on + strand at 32.805 kb on - strand at 32.805 kb on - strand at 32.805 kb on - strand at 33.046 kb on + strand, within GFF6455 at 33.143 kb on - strand, within GFF6455 at 33.143 kb on - strand, within GFF6455 at 33.178 kb on + strand, within GFF6455 at 33.179 kb on - strand, within GFF6455 at 33.220 kb on + strand, within GFF6455 at 33.274 kb on + strand, within GFF6455 at 33.275 kb on - strand, within GFF6455 at 33.473 kb on - strand at 33.473 kb on - strand at 33.473 kb on - strand at 33.473 kb on - strand at 33.473 kb on - strand at 33.528 kb on + strand at 33.528 kb on + strand at 33.528 kb on + strand at 33.529 kb on - strand at 33.571 kb on - strand at 33.571 kb on - strand at 33.571 kb on - strand at 33.664 kb on + strand, within GFF6456 at 33.665 kb on - strand, within GFF6456 at 33.706 kb on - strand, within GFF6456 at 33.732 kb on + strand, within GFF6456 at 33.765 kb on + strand, within GFF6456 at 33.765 kb on + strand, within GFF6456 at 33.766 kb on - strand, within GFF6456 at 33.783 kb on + strand, within GFF6456 at 33.783 kb on + strand, within GFF6456 at 33.783 kb on + strand, within GFF6456 at 33.783 kb on + strand, within GFF6456 at 33.784 kb on - strand, within GFF6456 at 33.784 kb on - strand, within GFF6456 at 33.784 kb on - strand, within GFF6456 at 33.859 kb on - strand, within GFF6456 at 33.951 kb on + strand, within GFF6456 at 33.951 kb on + strand, within GFF6456 at 33.951 kb on + strand, within GFF6456 at 33.951 kb on + strand, within GFF6456 at 33.951 kb on + strand, within GFF6456 at 33.951 kb on + strand, within GFF6456 at 33.951 kb on + strand, within GFF6456 at 33.952 kb on - strand, within GFF6456 at 33.952 kb on - strand, within GFF6456 at 33.955 kb on - strand, within GFF6456 at 33.955 kb on - strand, within GFF6456 at 34.230 kb on + strand, within GFF6456 at 34.231 kb on - strand, within GFF6456 at 34.231 kb on - strand, within GFF6456 at 34.251 kb on + strand, within GFF6456 at 34.458 kb on + strand, within GFF6456 at 34.459 kb on - strand, within GFF6456 at 34.575 kb on + strand, within GFF6456 at 34.575 kb on + strand, within GFF6456 at 34.576 kb on - strand, within GFF6456 at 34.576 kb on - strand, within GFF6456 at 34.576 kb on - strand, within GFF6456 at 34.734 kb on + strand, within GFF6456 at 34.734 kb on + strand, within GFF6456 at 34.734 kb on + strand, within GFF6456 at 34.735 kb on - strand, within GFF6456 at 34.857 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.066 kb on + strand at 35.066 kb on + strand at 35.067 kb on - strand at 35.067 kb on - strand at 35.073 kb on + strand at 35.074 kb on - strand at 35.074 kb on - strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.192 kb on - strand at 35.192 kb on - strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.263 kb on + strand at 35.263 kb on + strand at 35.264 kb on - strand at 35.354 kb on - strand, within GFF6457 at 35.354 kb on - strand, within GFF6457 at 35.395 kb on + strand, within GFF6457 at 35.395 kb on + strand, within GFF6457 at 35.395 kb on + strand, within GFF6457 at 35.396 kb on - strand, within GFF6457 at 35.396 kb on - strand, within GFF6457 at 35.396 kb on - strand, within GFF6457 at 35.396 kb on - strand, within GFF6457 at 35.457 kb on + strand, within GFF6457 at 35.457 kb on + strand, within GFF6457 at 35.458 kb on - strand, within GFF6457 at 35.458 kb on - strand, within GFF6457 at 35.458 kb on - strand, within GFF6457 at 35.458 kb on - strand, within GFF6457 at 35.622 kb on + strand, within GFF6457 at 35.623 kb on - strand, within GFF6457 at 35.623 kb on - strand, within GFF6457 at 35.623 kb on - strand, within GFF6457 at 35.863 kb on + strand at 35.864 kb on - strand at 35.972 kb on + strand, within GFF6458 at 35.972 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.984 kb on - strand, within GFF6458 at 35.984 kb on - strand, within GFF6458 at 35.984 kb on - strand, within GFF6458 at 35.984 kb on - strand, within GFF6458 at 36.091 kb on + strand, within GFF6458 at 36.091 kb on + strand, within GFF6458 at 36.092 kb on - strand, within GFF6458 at 36.092 kb on - strand, within GFF6458 at 36.092 kb on - strand, within GFF6458 at 36.092 kb on - strand, within GFF6458 at 36.092 kb on - strand, within GFF6458 at 36.103 kb on + strand, within GFF6458 at 36.103 kb on + strand, within GFF6458 at 36.103 kb on + strand, within GFF6458 at 36.103 kb on + strand, within GFF6458 at 36.103 kb on + strand, within GFF6458 at 36.104 kb on - strand, within GFF6458 at 36.104 kb on - strand, within GFF6458 at 36.104 kb on - strand, within GFF6458 at 36.104 kb on - strand, within GFF6458 at 36.104 kb on - strand, within GFF6458 at 36.187 kb on + strand, within GFF6458 at 36.187 kb on + strand, within GFF6458 at 36.188 kb on - strand, within GFF6458 at 36.188 kb on - strand, within GFF6458 at 36.188 kb on - strand, within GFF6458
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 32,529 + GFF6454 0.75 -0.1 32,529 + GFF6454 0.75 -1.5 32,529 + GFF6454 0.75 -0.5 32,541 + GFF6454 0.77 -0.7 32,541 + GFF6454 0.77 -0.5 32,542 - GFF6454 0.77 +0.0 32,542 - GFF6454 0.77 -0.8 32,542 - GFF6454 0.77 -0.8 32,542 - GFF6454 0.77 -1.5 32,697 + -0.6 32,698 - -0.3 32,719 + -0.3 32,720 - -0.1 32,720 - -2.0 32,720 - -0.3 32,720 - -0.3 32,787 + +0.3 32,787 + -0.6 32,787 + -0.6 32,787 + +0.8 32,787 + -0.3 32,788 - +0.7 32,788 - -0.9 32,788 - -1.4 32,788 - +0.4 32,788 - -1.1 32,788 - -0.7 32,788 - -0.6 32,804 + -0.5 32,804 + -0.1 32,805 - +0.7 32,805 - -0.7 32,805 - +0.9 33,046 + GFF6455 0.27 +0.3 33,143 - GFF6455 0.43 -1.2 33,143 - GFF6455 0.43 +1.0 33,178 + GFF6455 0.49 -0.2 33,179 - GFF6455 0.49 -1.1 33,220 + GFF6455 0.56 +1.2 33,274 + GFF6455 0.66 -0.5 33,275 - GFF6455 0.66 -0.9 33,473 - -0.1 33,473 - +0.3 33,473 - +0.4 33,473 - -0.1 33,473 - -0.2 33,528 + -0.7 33,528 + -0.8 33,528 + -0.7 33,529 - -0.1 33,571 - -0.3 33,571 - +0.7 33,571 - -0.4 33,664 + GFF6456 0.10 -0.5 33,665 - GFF6456 0.10 -0.3 33,706 - GFF6456 0.13 -1.2 33,732 + GFF6456 0.14 -2.7 33,765 + GFF6456 0.16 +0.1 33,765 + GFF6456 0.16 +0.7 33,766 - GFF6456 0.16 -1.8 33,783 + GFF6456 0.17 +0.1 33,783 + GFF6456 0.17 +2.7 33,783 + GFF6456 0.17 -1.2 33,783 + GFF6456 0.17 -0.6 33,784 - GFF6456 0.17 -0.9 33,784 - GFF6456 0.17 -0.5 33,784 - GFF6456 0.17 +0.0 33,859 - GFF6456 0.22 +1.1 33,951 + GFF6456 0.27 -0.3 33,951 + GFF6456 0.27 -2.5 33,951 + GFF6456 0.27 -0.6 33,951 + GFF6456 0.27 -1.1 33,951 + GFF6456 0.27 -0.7 33,951 + GFF6456 0.27 -0.0 33,951 + GFF6456 0.27 +0.3 33,952 - GFF6456 0.27 +0.4 33,952 - GFF6456 0.27 -0.9 33,955 - GFF6456 0.27 +0.3 33,955 - GFF6456 0.27 +0.3 34,230 + GFF6456 0.43 -0.7 34,231 - GFF6456 0.43 +0.8 34,231 - GFF6456 0.43 +0.3 34,251 + GFF6456 0.44 -0.7 34,458 + GFF6456 0.56 +0.2 34,459 - GFF6456 0.56 -0.3 34,575 + GFF6456 0.62 -1.8 34,575 + GFF6456 0.62 +0.0 34,576 - GFF6456 0.62 -0.2 34,576 - GFF6456 0.62 +0.9 34,576 - GFF6456 0.62 -0.6 34,734 + GFF6456 0.71 -0.0 34,734 + GFF6456 0.71 -0.2 34,734 + GFF6456 0.71 +0.8 34,735 - GFF6456 0.72 +0.5 34,857 + GFF6456 0.78 +0.6 34,869 + GFF6456 0.79 +0.1 34,869 + GFF6456 0.79 -0.4 34,869 + GFF6456 0.79 -0.7 34,869 + GFF6456 0.79 -0.5 34,869 + GFF6456 0.79 -0.3 34,869 + GFF6456 0.79 -1.6 34,869 + GFF6456 0.79 -1.7 34,869 + GFF6456 0.79 -0.2 34,869 + GFF6456 0.79 +1.1 34,869 + GFF6456 0.79 +1.7 34,870 - GFF6456 0.79 +0.7 34,870 - GFF6456 0.79 -0.2 34,870 - GFF6456 0.79 -0.2 34,870 - GFF6456 0.79 -0.3 34,870 - GFF6456 0.79 -0.0 34,870 - GFF6456 0.79 -0.7 34,870 - GFF6456 0.79 -0.4 34,870 - GFF6456 0.79 -0.5 34,870 - GFF6456 0.79 +0.5 34,870 - GFF6456 0.79 +0.7 34,870 - GFF6456 0.79 -0.3 34,870 - GFF6456 0.79 +0.1 35,004 + GFF6456 0.87 +0.4 35,004 + GFF6456 0.87 -0.3 35,004 + GFF6456 0.87 -1.0 35,004 + GFF6456 0.87 +0.1 35,004 + GFF6456 0.87 -0.8 35,004 + GFF6456 0.87 -0.8 35,004 + GFF6456 0.87 -0.5 35,004 + GFF6456 0.87 -0.4 35,004 + GFF6456 0.87 -1.7 35,004 + GFF6456 0.87 -1.0 35,004 + GFF6456 0.87 -0.0 35,004 + GFF6456 0.87 -0.9 35,005 - GFF6456 0.87 -0.6 35,005 - GFF6456 0.87 -1.0 35,005 - GFF6456 0.87 -1.0 35,005 - GFF6456 0.87 -0.3 35,005 - GFF6456 0.87 -0.2 35,005 - GFF6456 0.87 +0.5 35,005 - GFF6456 0.87 -1.2 35,005 - GFF6456 0.87 +0.2 35,005 - GFF6456 0.87 -0.4 35,005 - GFF6456 0.87 -0.1 35,005 - GFF6456 0.87 -0.7 35,066 + +0.9 35,066 + -0.5 35,067 - +0.9 35,067 - -0.7 35,073 + -0.8 35,074 - -0.7 35,074 - -0.5 35,191 + +0.7 35,191 + +0.5 35,191 + -0.6 35,191 + -0.3 35,191 + -0.8 35,191 + -0.0 35,192 - -0.0 35,192 - +1.1 35,239 + +0.1 35,239 + +0.4 35,239 + +0.6 35,240 - -0.2 35,240 - +0.7 35,240 - +0.2 35,240 - +0.1 35,240 - -0.8 35,240 - +0.3 35,244 + +0.7 35,244 + -1.3 35,244 + -0.7 35,244 + +0.9 35,244 + -0.7 35,244 + -0.8 35,244 + +0.0 35,244 + -1.6 35,244 + -1.5 35,244 + +0.2 35,245 - +0.3 35,245 - -0.5 35,245 - -0.3 35,245 - -0.7 35,245 - -0.6 35,245 - -0.4 35,245 - +0.7 35,245 - -1.7 35,263 + -0.5 35,263 + +1.7 35,264 - -2.2 35,354 - GFF6457 0.11 -1.9 35,354 - GFF6457 0.11 -0.3 35,395 + GFF6457 0.18 +0.0 35,395 + GFF6457 0.18 +0.6 35,395 + GFF6457 0.18 -0.5 35,396 - GFF6457 0.18 -0.1 35,396 - GFF6457 0.18 -2.0 35,396 - GFF6457 0.18 +1.5 35,396 - GFF6457 0.18 -0.1 35,457 + GFF6457 0.29 -0.0 35,457 + GFF6457 0.29 -0.8 35,458 - GFF6457 0.29 +0.3 35,458 - GFF6457 0.29 +1.7 35,458 - GFF6457 0.29 -2.2 35,458 - GFF6457 0.29 +0.1 35,622 + GFF6457 0.57 +0.3 35,623 - GFF6457 0.57 -0.3 35,623 - GFF6457 0.57 +0.8 35,623 - GFF6457 0.57 -1.8 35,863 + -1.2 35,864 - -0.2 35,972 + GFF6458 0.16 +0.1 35,972 + GFF6458 0.16 +0.3 35,983 + GFF6458 0.18 +3.4 35,983 + GFF6458 0.18 +0.3 35,983 + GFF6458 0.18 -0.2 35,983 + GFF6458 0.18 -0.3 35,983 + GFF6458 0.18 +0.2 35,983 + GFF6458 0.18 -0.1 35,983 + GFF6458 0.18 -0.2 35,983 + GFF6458 0.18 -0.2 35,984 - GFF6458 0.18 -0.6 35,984 - GFF6458 0.18 -1.3 35,984 - GFF6458 0.18 -1.3 35,984 - GFF6458 0.18 -1.0 36,091 + GFF6458 0.33 -0.7 36,091 + GFF6458 0.33 -0.3 36,092 - GFF6458 0.33 +0.9 36,092 - GFF6458 0.33 -0.2 36,092 - GFF6458 0.33 -0.7 36,092 - GFF6458 0.33 +0.5 36,092 - GFF6458 0.33 +0.5 36,103 + GFF6458 0.35 +0.2 36,103 + GFF6458 0.35 -0.8 36,103 + GFF6458 0.35 +1.7 36,103 + GFF6458 0.35 -1.5 36,103 + GFF6458 0.35 +2.4 36,104 - GFF6458 0.35 -1.5 36,104 - GFF6458 0.35 -0.8 36,104 - GFF6458 0.35 -0.9 36,104 - GFF6458 0.35 +0.2 36,104 - GFF6458 0.35 -0.6 36,187 + GFF6458 0.47 -0.2 36,187 + GFF6458 0.47 -0.2 36,188 - GFF6458 0.47 -1.3 36,188 - GFF6458 0.47 -0.4 36,188 - GFF6458 0.47 +2.1
Or see this region's nucleotide sequence