Strain Fitness in Variovorax sp. SCN45 around GFF6453

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
29,264	+		GFF6452	0.34	-0.0
29,264	+		GFF6452	0.34	-0.9
29,264	+		GFF6452	0.34	+0.3
29,264	+		GFF6452	0.34	-0.3
29,265	-		GFF6452	0.34	-0.2
29,265	-		GFF6452	0.34	+1.2
29,265	-		GFF6452	0.34	-2.0
29,445	-		GFF6452	0.47	-1.4
29,533	-		GFF6452	0.54	+0.2
29,570	+		GFF6452	0.56	-0.7
29,571	-		GFF6452	0.56	+0.0
29,615	+		GFF6452	0.59	-0.2
29,634	-		GFF6452	0.61	-0.2
29,787	-		GFF6452	0.72	-0.6
29,983	+		GFF6452	0.86	+0.2
29,983	+		GFF6452	0.86	+3.5
29,984	-		GFF6452	0.86	+0.1
29,984	-		GFF6452	0.86	-0.5
30,161	+				-0.1
30,161	+				-0.5
30,161	+				+0.6
30,162	-				-0.8
30,162	-				-0.5
30,162	-				+1.1
30,205	+				-0.3
30,206	-				-0.1
30,206	-				-0.0
30,235	+				-0.2
30,236	-				-0.0
30,268	+				-0.2
30,268	+				+0.1
30,406	+		GFF6453	0.13	-0.2
30,406	+		GFF6453	0.13	-0.2
30,409	+		GFF6453	0.13	+0.4
30,409	+		GFF6453	0.13	-1.5
30,422	-		GFF6453	0.14	-1.1
30,451	+		GFF6453	0.15	-0.7
30,580	+		GFF6453	0.23	-0.6
30,581	-		GFF6453	0.23	-0.3
30,581	-		GFF6453	0.23	-1.1
30,581	-		GFF6453	0.23	+1.1
30,601	+		GFF6453	0.24	-0.2
30,601	+		GFF6453	0.24	+0.1
30,601	+		GFF6453	0.24	-1.4
30,601	+		GFF6453	0.24	+0.5
30,601	+		GFF6453	0.24	-1.0
30,602	-		GFF6453	0.24	-0.3
30,602	-		GFF6453	0.24	-1.3
30,602	-		GFF6453	0.24	-1.1
30,614	-		GFF6453	0.25	-1.3
30,652	+		GFF6453	0.27	+0.3
30,652	+		GFF6453	0.27	+1.7
30,653	-		GFF6453	0.27	+0.9
30,653	-		GFF6453	0.27	-0.3
30,658	+		GFF6453	0.27	+0.8
30,658	+		GFF6453	0.27	-0.5
30,659	-		GFF6453	0.27	-1.5
30,659	-		GFF6453	0.27	+0.1
30,659	-		GFF6453	0.27	-0.8
30,659	-		GFF6453	0.27	+1.2
30,910	+		GFF6453	0.41	-0.2
30,910	+		GFF6453	0.41	-2.0
30,911	-		GFF6453	0.41	-0.2
30,916	+		GFF6453	0.42	-0.9
30,916	+		GFF6453	0.42	+0.4
30,916	+		GFF6453	0.42	+0.7
30,916	+		GFF6453	0.42	+0.2
30,917	-		GFF6453	0.42	-0.1
30,917	-		GFF6453	0.42	+0.4
30,917	-		GFF6453	0.42	-0.2
30,917	-		GFF6453	0.42	+0.8
30,955	+		GFF6453	0.44	-0.3
30,955	+		GFF6453	0.44	-1.3
30,956	-		GFF6453	0.44	+0.0
30,956	-		GFF6453	0.44	-0.8
30,956	-		GFF6453	0.44	-1.7
31,066	+		GFF6453	0.50	+0.3
31,066	+		GFF6453	0.50	+1.7
31,066	+		GFF6453	0.50	+0.0
31,066	+		GFF6453	0.50	-0.8
31,066	+		GFF6453	0.50	+1.1
31,066	+		GFF6453	0.50	+0.1
31,066	+		GFF6453	0.50	+0.3
31,066	+		GFF6453	0.50	-0.3
31,067	-		GFF6453	0.50	-0.7
31,067	-		GFF6453	0.50	+1.7
31,067	-		GFF6453	0.50	-0.3
31,067	-		GFF6453	0.50	-0.3
31,067	-		GFF6453	0.50	+0.7
31,067	-		GFF6453	0.50	-0.3
31,067	-		GFF6453	0.50	-1.8
31,067	-		GFF6453	0.50	+0.7
31,198	+		GFF6453	0.58	-0.2
31,198	+		GFF6453	0.58	-1.3
31,198	+		GFF6453	0.58	+0.8
31,199	-		GFF6453	0.58	-0.6
31,199	-		GFF6453	0.58	+4.4
31,199	-		GFF6453	0.58	+0.5
31,199	-		GFF6453	0.58	-0.7
31,204	+		GFF6453	0.58	+0.7
31,204	+		GFF6453	0.58	+1.0
31,204	+		GFF6453	0.58	-0.5
31,204	+		GFF6453	0.58	+0.5
31,204	+		GFF6453	0.58	-0.3
31,204	+		GFF6453	0.58	+1.1
31,204	+		GFF6453	0.58	-0.2
31,204	+		GFF6453	0.58	-1.1
31,204	+		GFF6453	0.58	-0.3
31,205	-		GFF6453	0.58	-0.5
31,205	-		GFF6453	0.58	+0.5
31,205	-		GFF6453	0.58	+0.2
31,205	-		GFF6453	0.58	+0.7
31,205	-		GFF6453	0.58	-0.5
31,205	-		GFF6453	0.58	-0.3
31,205	-		GFF6453	0.58	+1.7
31,205	-		GFF6453	0.58	-0.1
31,274	-		GFF6453	0.62	-0.1
31,315	+		GFF6453	0.64	-0.7
31,510	+		GFF6453	0.75	+0.3
31,510	+		GFF6453	0.75	-0.7
31,511	-		GFF6453	0.75	-0.2
31,511	-		GFF6453	0.75	+2.2
31,511	-		GFF6453	0.75	-0.1
31,511	-		GFF6453	0.75	+0.8
31,511	-		GFF6453	0.75	-0.1
31,511	-		GFF6453	0.75	-0.5
31,577	-		GFF6453	0.79	-1.3
31,577	-		GFF6453	0.79	+0.5
31,771	+		GFF6453	0.90	+0.8
31,771	+		GFF6453	0.90	-0.2
31,771	+		GFF6453	0.90	+0.3
31,771	+		GFF6453	0.90	-0.6
31,772	-				+0.6
31,772	-				-0.5
32,007	+				-0.5
32,007	+				-0.3
32,007	+				-1.1
32,008	-				+0.5
32,008	-				+0.3
32,008	-				-0.5
32,008	-				-0.4
32,121	+		GFF6454	0.21	+0.3
32,122	-		GFF6454	0.21	-0.5
32,277	+		GFF6454	0.41	-0.5
32,277	+		GFF6454	0.41	-0.7
32,277	+		GFF6454	0.41	-0.8
32,278	-		GFF6454	0.42	+0.6
32,278	-		GFF6454	0.42	-0.8
32,338	-		GFF6454	0.50	-0.1
32,379	+		GFF6454	0.55	-1.6
32,379	+		GFF6454	0.55	-0.8
32,379	+		GFF6454	0.55	+0.7
32,379	+		GFF6454	0.55	+1.3
32,380	-		GFF6454	0.55	+1.7
32,380	-		GFF6454	0.55	+0.7
32,380	-		GFF6454	0.55	+0.1
32,380	-		GFF6454	0.55	-0.1
32,380	-		GFF6454	0.55	-0.4
32,529	+		GFF6454	0.75	-0.1
32,529	+		GFF6454	0.75	-1.5
32,529	+		GFF6454	0.75	-0.5
32,541	+		GFF6454	0.77	-0.7
32,541	+		GFF6454	0.77	-0.5
32,542	-		GFF6454	0.77	+0.0
32,542	-		GFF6454	0.77	-0.8
32,542	-		GFF6454	0.77	-0.8
32,542	-		GFF6454	0.77	-1.5
32,697	+				-0.6
32,698	-				-0.3
32,719	+				-0.3
32,720	-				-0.1
32,720	-				-2.0
32,720	-				-0.3
32,720	-				-0.3
32,787	+				+0.3
32,787	+				-0.6
32,787	+				-0.6
32,787	+				+0.8
32,787	+				-0.3
32,788	-				+0.7
32,788	-				-0.9
32,788	-				-1.4
32,788	-				+0.4
32,788	-				-1.1
32,788	-				-0.7
32,788	-				-0.6
32,804	+				-0.5
32,804	+				-0.1
32,805	-				+0.7
32,805	-				-0.7
32,805	-				+0.9