Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6442 and GFF6443 are separated by 3 nucleotides GFF6443 and GFF6444 are separated by 51 nucleotides GFF6444 and GFF6445 are separated by 83 nucleotides GFF6445 and GFF6446 overlap by 14 nucleotides
GFF6442 - Aldehyde dehydrogenase (EC 1.2.1.3), at 17,672 to 19,192
GFF6442
GFF6443 - no description, at 19,196 to 19,369
GFF6443
GFF6444 - no description, at 19,421 to 21,316
GFF6444
GFF6445 - Nitroreductase, at 21,400 to 22,308
GFF6445
GFF6446 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 22,295 to 23,368
GFF6446
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -1
0
1 at 18.441 kb on + strand, within GFF6442 at 18.653 kb on + strand, within GFF6442 at 18.747 kb on + strand, within GFF6442 at 18.747 kb on + strand, within GFF6442 at 18.748 kb on - strand, within GFF6442 at 18.813 kb on + strand, within GFF6442 at 18.813 kb on + strand, within GFF6442 at 19.089 kb on + strand at 19.089 kb on + strand at 19.090 kb on - strand at 19.090 kb on - strand at 19.090 kb on - strand at 19.090 kb on - strand at 19.090 kb on - strand at 19.128 kb on + strand at 19.128 kb on + strand at 19.128 kb on + strand at 19.128 kb on + strand at 19.128 kb on + strand at 19.128 kb on + strand at 19.128 kb on + strand at 19.128 kb on + strand at 19.129 kb on - strand at 19.129 kb on - strand at 19.129 kb on - strand at 19.137 kb on + strand at 19.138 kb on - strand at 19.262 kb on + strand, within GFF6443 at 19.263 kb on - strand, within GFF6443 at 19.263 kb on - strand, within GFF6443 at 19.291 kb on + strand, within GFF6443 at 19.291 kb on + strand, within GFF6443 at 19.361 kb on - strand at 19.367 kb on + strand at 19.367 kb on + strand at 19.368 kb on - strand at 19.368 kb on - strand at 19.559 kb on + strand at 19.559 kb on + strand at 19.559 kb on + strand at 19.559 kb on + strand at 19.559 kb on + strand at 19.559 kb on + strand at 19.559 kb on + strand at 19.560 kb on - strand at 19.560 kb on - strand at 19.560 kb on - strand at 19.560 kb on - strand at 19.560 kb on - strand at 19.560 kb on - strand at 19.560 kb on - strand at 19.560 kb on - strand at 19.560 kb on - strand at 19.560 kb on - strand at 19.671 kb on + strand, within GFF6444 at 19.671 kb on + strand, within GFF6444 at 19.671 kb on + strand, within GFF6444 at 19.672 kb on - strand, within GFF6444 at 19.729 kb on - strand, within GFF6444 at 19.871 kb on + strand, within GFF6444 at 19.871 kb on + strand, within GFF6444 at 19.872 kb on - strand, within GFF6444 at 19.872 kb on - strand, within GFF6444 at 19.872 kb on - strand, within GFF6444 at 19.872 kb on - strand, within GFF6444 at 20.357 kb on - strand, within GFF6444 at 20.582 kb on + strand, within GFF6444 at 20.582 kb on + strand, within GFF6444 at 20.583 kb on - strand, within GFF6444 at 20.815 kb on - strand, within GFF6444 at 20.846 kb on + strand, within GFF6444 at 20.846 kb on + strand, within GFF6444 at 20.994 kb on - strand, within GFF6444 at 21.344 kb on - strand at 21.357 kb on + strand at 21.357 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 18,441 + GFF6442 0.51 -0.9 18,653 + GFF6442 0.64 -1.2 18,747 + GFF6442 0.71 -0.1 18,747 + GFF6442 0.71 -1.3 18,748 - GFF6442 0.71 +0.0 18,813 + GFF6442 0.75 +0.4 18,813 + GFF6442 0.75 +0.9 19,089 + -0.3 19,089 + -0.1 19,090 - -0.9 19,090 - +0.0 19,090 - -0.1 19,090 - -0.2 19,090 - -0.9 19,128 + -0.4 19,128 + -1.2 19,128 + -0.5 19,128 + -0.4 19,128 + +0.5 19,128 + +0.3 19,128 + -0.3 19,128 + -0.7 19,129 - -0.3 19,129 - -0.4 19,129 - +0.7 19,137 + +0.7 19,138 - +0.3 19,262 + GFF6443 0.38 -0.7 19,263 - GFF6443 0.39 +0.3 19,263 - GFF6443 0.39 -0.3 19,291 + GFF6443 0.55 -1.2 19,291 + GFF6443 0.55 -0.6 19,361 - -0.8 19,367 + +0.9 19,367 + -0.7 19,368 - -0.7 19,368 - +0.1 19,559 + +0.7 19,559 + -0.6 19,559 + -0.2 19,559 + -0.1 19,559 + -0.1 19,559 + +1.7 19,559 + -0.4 19,560 - -0.1 19,560 - +0.7 19,560 - +0.1 19,560 - -0.1 19,560 - -0.6 19,560 - +0.7 19,560 - +0.2 19,560 - -1.3 19,560 - -0.3 19,560 - +0.8 19,671 + GFF6444 0.13 -0.5 19,671 + GFF6444 0.13 -0.3 19,671 + GFF6444 0.13 -0.3 19,672 - GFF6444 0.13 -1.0 19,729 - GFF6444 0.16 +1.7 19,871 + GFF6444 0.24 +0.4 19,871 + GFF6444 0.24 -0.4 19,872 - GFF6444 0.24 -0.3 19,872 - GFF6444 0.24 +0.2 19,872 - GFF6444 0.24 -1.3 19,872 - GFF6444 0.24 -0.3 20,357 - GFF6444 0.49 +1.0 20,582 + GFF6444 0.61 +0.8 20,582 + GFF6444 0.61 -0.0 20,583 - GFF6444 0.61 -0.2 20,815 - GFF6444 0.74 -1.2 20,846 + GFF6444 0.75 +0.2 20,846 + GFF6444 0.75 -0.1 20,994 - GFF6444 0.83 -0.4 21,344 - -0.4 21,357 + +0.1 21,357 + +0.3
Or see this region's nucleotide sequence