Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF63 and GFF64 overlap by 4 nucleotides GFF64 and GFF65 are separated by 35 nucleotides GFF65 and GFF66 are separated by 22 nucleotides
GFF63 - Putative glycosyltransferase, at 79,430 to 80,512
GFF63
GFF64 - hypothetical protein, at 80,509 to 81,462
GFF64
GFF65 - hypothetical protein, at 81,498 to 82,433
GFF65
GFF66 - hypothetical protein, at 82,456 to 83,709
GFF66
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1 at 79.574 kb on + strand, within GFF63 at 79.574 kb on + strand, within GFF63 at 79.575 kb on - strand, within GFF63 at 79.575 kb on - strand, within GFF63 at 79.628 kb on + strand, within GFF63 at 79.628 kb on + strand, within GFF63 at 79.629 kb on - strand, within GFF63 at 79.629 kb on - strand, within GFF63 at 79.629 kb on - strand, within GFF63 at 79.637 kb on + strand, within GFF63 at 79.673 kb on + strand, within GFF63 at 79.673 kb on + strand, within GFF63 at 79.691 kb on + strand, within GFF63 at 79.757 kb on + strand, within GFF63 at 79.757 kb on + strand, within GFF63 at 79.757 kb on + strand, within GFF63 at 79.758 kb on - strand, within GFF63 at 79.758 kb on - strand, within GFF63 at 79.758 kb on - strand, within GFF63 at 79.758 kb on - strand, within GFF63 at 79.758 kb on - strand, within GFF63 at 79.758 kb on - strand, within GFF63 at 79.766 kb on + strand, within GFF63 at 79.776 kb on - strand, within GFF63 at 80.000 kb on + strand, within GFF63 at 80.006 kb on + strand, within GFF63 at 80.006 kb on + strand, within GFF63 at 80.006 kb on + strand, within GFF63 at 80.007 kb on - strand, within GFF63 at 80.007 kb on - strand, within GFF63 at 80.202 kb on - strand, within GFF63 at 80.202 kb on - strand, within GFF63 at 80.369 kb on + strand, within GFF63 at 80.369 kb on + strand, within GFF63 at 80.370 kb on - strand, within GFF63 at 80.384 kb on + strand, within GFF63 at 80.462 kb on + strand at 80.463 kb on - strand at 80.463 kb on - strand at 80.642 kb on - strand, within GFF64 at 80.642 kb on - strand, within GFF64 at 80.642 kb on - strand, within GFF64 at 80.765 kb on - strand, within GFF64 at 80.765 kb on - strand, within GFF64 at 80.887 kb on + strand, within GFF64 at 80.888 kb on - strand, within GFF64 at 80.888 kb on - strand, within GFF64 at 81.058 kb on + strand, within GFF64 at 81.058 kb on + strand, within GFF64 at 81.058 kb on + strand, within GFF64 at 81.058 kb on + strand, within GFF64 at 81.058 kb on + strand, within GFF64 at 81.059 kb on - strand, within GFF64 at 81.059 kb on - strand, within GFF64 at 81.214 kb on + strand, within GFF64 at 81.214 kb on + strand, within GFF64 at 81.214 kb on + strand, within GFF64 at 81.215 kb on - strand, within GFF64 at 81.215 kb on - strand, within GFF64 at 81.215 kb on - strand, within GFF64 at 81.477 kb on + strand at 81.477 kb on + strand at 81.477 kb on + strand at 81.477 kb on + strand at 81.477 kb on + strand at 81.477 kb on + strand at 81.477 kb on + strand at 81.477 kb on + strand at 81.478 kb on - strand at 81.478 kb on - strand at 81.478 kb on - strand at 81.478 kb on - strand at 81.478 kb on - strand at 81.481 kb on + strand at 81.482 kb on - strand at 81.482 kb on - strand at 81.506 kb on + strand at 81.630 kb on + strand, within GFF65 at 81.652 kb on - strand, within GFF65 at 81.652 kb on - strand, within GFF65 at 81.652 kb on - strand, within GFF65 at 81.706 kb on - strand, within GFF65 at 81.706 kb on - strand, within GFF65 at 81.723 kb on + strand, within GFF65 at 81.723 kb on + strand, within GFF65 at 81.724 kb on - strand, within GFF65 at 81.724 kb on - strand, within GFF65 at 81.724 kb on - strand, within GFF65 at 81.724 kb on - strand, within GFF65 at 81.843 kb on + strand, within GFF65 at 81.843 kb on + strand, within GFF65 at 81.844 kb on - strand, within GFF65 at 81.844 kb on - strand, within GFF65 at 81.844 kb on - strand, within GFF65 at 81.844 kb on - strand, within GFF65 at 81.844 kb on - strand, within GFF65 at 81.948 kb on + strand, within GFF65 at 81.948 kb on + strand, within GFF65 at 81.948 kb on + strand, within GFF65 at 81.948 kb on + strand, within GFF65 at 81.948 kb on + strand, within GFF65 at 81.949 kb on - strand, within GFF65 at 81.949 kb on - strand, within GFF65 at 81.949 kb on - strand, within GFF65 at 82.044 kb on + strand, within GFF65 at 82.045 kb on - strand, within GFF65 at 82.323 kb on + strand, within GFF65 at 82.323 kb on + strand, within GFF65 at 82.324 kb on - strand, within GFF65 at 82.431 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 79,574 + GFF63 0.13 +0.5 79,574 + GFF63 0.13 +1.0 79,575 - GFF63 0.13 +0.7 79,575 - GFF63 0.13 +0.3 79,628 + GFF63 0.18 +1.1 79,628 + GFF63 0.18 +1.1 79,629 - GFF63 0.18 -0.3 79,629 - GFF63 0.18 +0.2 79,629 - GFF63 0.18 +0.6 79,637 + GFF63 0.19 -0.6 79,673 + GFF63 0.22 -0.4 79,673 + GFF63 0.22 -0.8 79,691 + GFF63 0.24 -0.4 79,757 + GFF63 0.30 -1.1 79,757 + GFF63 0.30 -2.4 79,757 + GFF63 0.30 -0.4 79,758 - GFF63 0.30 +0.7 79,758 - GFF63 0.30 +0.7 79,758 - GFF63 0.30 -1.1 79,758 - GFF63 0.30 -0.9 79,758 - GFF63 0.30 +0.0 79,758 - GFF63 0.30 -0.9 79,766 + GFF63 0.31 +0.5 79,776 - GFF63 0.32 +0.1 80,000 + GFF63 0.53 +0.9 80,006 + GFF63 0.53 -0.1 80,006 + GFF63 0.53 +0.3 80,006 + GFF63 0.53 -1.4 80,007 - GFF63 0.53 +0.2 80,007 - GFF63 0.53 -0.3 80,202 - GFF63 0.71 -1.3 80,202 - GFF63 0.71 +0.4 80,369 + GFF63 0.87 -1.7 80,369 + GFF63 0.87 -0.6 80,370 - GFF63 0.87 +0.4 80,384 + GFF63 0.88 -0.9 80,462 + -0.1 80,463 - -0.3 80,463 - -0.3 80,642 - GFF64 0.14 +0.3 80,642 - GFF64 0.14 -1.1 80,642 - GFF64 0.14 +0.6 80,765 - GFF64 0.27 +1.7 80,765 - GFF64 0.27 -0.1 80,887 + GFF64 0.40 -0.3 80,888 - GFF64 0.40 +1.1 80,888 - GFF64 0.40 +0.0 81,058 + GFF64 0.58 +0.0 81,058 + GFF64 0.58 +0.6 81,058 + GFF64 0.58 +1.2 81,058 + GFF64 0.58 -0.1 81,058 + GFF64 0.58 -0.3 81,059 - GFF64 0.58 -0.4 81,059 - GFF64 0.58 +0.1 81,214 + GFF64 0.74 -1.1 81,214 + GFF64 0.74 -0.3 81,214 + GFF64 0.74 +0.4 81,215 - GFF64 0.74 +1.4 81,215 - GFF64 0.74 -0.3 81,215 - GFF64 0.74 -0.6 81,477 + -0.6 81,477 + -1.2 81,477 + -1.3 81,477 + -0.2 81,477 + +0.2 81,477 + +0.1 81,477 + -1.1 81,477 + +0.1 81,478 - +0.3 81,478 - -0.4 81,478 - -0.6 81,478 - -0.1 81,478 - +0.1 81,481 + -0.2 81,482 - -0.2 81,482 - -0.1 81,506 + -0.6 81,630 + GFF65 0.14 +0.8 81,652 - GFF65 0.16 -1.7 81,652 - GFF65 0.16 -1.1 81,652 - GFF65 0.16 +1.5 81,706 - GFF65 0.22 +0.9 81,706 - GFF65 0.22 +0.3 81,723 + GFF65 0.24 +0.1 81,723 + GFF65 0.24 -0.3 81,724 - GFF65 0.24 +0.7 81,724 - GFF65 0.24 +0.7 81,724 - GFF65 0.24 +0.3 81,724 - GFF65 0.24 +0.2 81,843 + GFF65 0.37 -0.1 81,843 + GFF65 0.37 +1.0 81,844 - GFF65 0.37 +0.1 81,844 - GFF65 0.37 -0.9 81,844 - GFF65 0.37 -0.5 81,844 - GFF65 0.37 -0.3 81,844 - GFF65 0.37 -0.1 81,948 + GFF65 0.48 +0.0 81,948 + GFF65 0.48 +0.1 81,948 + GFF65 0.48 -0.4 81,948 + GFF65 0.48 +1.5 81,948 + GFF65 0.48 -0.7 81,949 - GFF65 0.48 -0.2 81,949 - GFF65 0.48 +0.5 81,949 - GFF65 0.48 -0.6 82,044 + GFF65 0.58 -0.0 82,045 - GFF65 0.58 +0.3 82,323 + GFF65 0.88 -0.1 82,323 + GFF65 0.88 -0.4 82,324 - GFF65 0.88 +0.7 82,431 + +0.6
Or see this region's nucleotide sequence