Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6373 and GFF6374 are separated by 133 nucleotides GFF6374 and GFF6375 are separated by 74 nucleotides
GFF6373 - T6SS component TssA (ImpA), at 42,381 to 43,472
GFF6373
GFF6374 - predicted 2-keto-3-deoxyxylonate dehydratase, at 43,606 to 44,799
GFF6374
GFF6375 - Uncharacterized aldehyde oxidase, molybdopterin-binding subunit, at 44,874 to 48,632
GFF6375
Position (kb) 43
44
45 Strain fitness (log2 ratio) -1
0
1
2 at 42.654 kb on - strand, within GFF6373 at 42.950 kb on - strand, within GFF6373 at 43.046 kb on + strand, within GFF6373 at 43.443 kb on + strand at 43.444 kb on - strand at 43.444 kb on - strand at 43.493 kb on - strand at 43.551 kb on + strand at 43.551 kb on + strand at 43.552 kb on - strand at 43.552 kb on - strand at 43.575 kb on + strand at 43.575 kb on + strand at 43.677 kb on + strand at 43.677 kb on + strand at 44.376 kb on + strand, within GFF6374 at 44.825 kb on + strand at 44.825 kb on + strand at 44.825 kb on + strand at 44.826 kb on - strand at 45.311 kb on - strand, within GFF6375 at 45.428 kb on - strand, within GFF6375 at 45.598 kb on + strand, within GFF6375 at 45.761 kb on - strand, within GFF6375 at 45.767 kb on - strand, within GFF6375
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 42,654 - GFF6373 0.25 -0.7 42,950 - GFF6373 0.52 -0.8 43,046 + GFF6373 0.61 -0.6 43,443 + -0.3 43,444 - +0.7 43,444 - +1.1 43,493 - -1.1 43,551 + -0.3 43,551 + -0.0 43,552 - -0.2 43,552 - -0.4 43,575 + +0.1 43,575 + +1.9 43,677 + -1.0 43,677 + -1.1 44,376 + GFF6374 0.64 -1.2 44,825 + +0.6 44,825 + +0.5 44,825 + -0.9 44,826 - -0.9 45,311 - GFF6375 0.12 -0.2 45,428 - GFF6375 0.15 -1.1 45,598 + GFF6375 0.19 -0.3 45,761 - GFF6375 0.24 +0.3 45,767 - GFF6375 0.24 -0.4
Or see this region's nucleotide sequence