Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6341 and GFF6342 are separated by 798 nucleotides
GFF6341 - no description, at 5,292 to 5,549
GFF6341
GFF6342 - Mobile element protein, at 6,348 to 6,698
GFF6342
Position (kb) 5
6 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4.390 kb on + strand at 4.390 kb on + strand at 4.391 kb on - strand at 4.391 kb on - strand at 4.439 kb on - strand at 4.661 kb on - strand at 4.661 kb on - strand at 4.796 kb on + strand at 4.796 kb on + strand at 4.796 kb on + strand at 4.796 kb on + strand at 4.796 kb on + strand at 4.797 kb on - strand at 4.797 kb on - strand at 4.797 kb on - strand at 5.171 kb on + strand at 5.171 kb on + strand at 5.172 kb on - strand at 5.172 kb on - strand at 5.172 kb on - strand at 5.337 kb on + strand, within GFF6341 at 5.337 kb on + strand, within GFF6341 at 5.338 kb on - strand, within GFF6341 at 5.338 kb on - strand, within GFF6341 at 5.338 kb on - strand, within GFF6341 at 5.368 kb on + strand, within GFF6341 at 5.368 kb on + strand, within GFF6341 at 5.368 kb on + strand, within GFF6341 at 5.368 kb on + strand, within GFF6341 at 5.368 kb on + strand, within GFF6341 at 5.368 kb on + strand, within GFF6341 at 5.369 kb on - strand, within GFF6341 at 5.369 kb on - strand, within GFF6341 at 5.369 kb on - strand, within GFF6341 at 5.369 kb on - strand, within GFF6341 at 5.369 kb on - strand, within GFF6341 at 5.372 kb on + strand, within GFF6341 at 5.372 kb on + strand, within GFF6341 at 5.372 kb on + strand, within GFF6341 at 5.373 kb on - strand, within GFF6341 at 5.373 kb on - strand, within GFF6341 at 5.373 kb on - strand, within GFF6341 at 5.373 kb on - strand, within GFF6341 at 5.373 kb on - strand, within GFF6341 at 5.373 kb on - strand, within GFF6341 at 5.397 kb on - strand, within GFF6341 at 5.404 kb on + strand, within GFF6341 at 5.478 kb on + strand, within GFF6341 at 5.478 kb on + strand, within GFF6341 at 5.478 kb on + strand, within GFF6341 at 5.479 kb on - strand, within GFF6341 at 5.479 kb on - strand, within GFF6341 at 5.479 kb on - strand, within GFF6341 at 5.494 kb on - strand, within GFF6341 at 5.520 kb on + strand, within GFF6341 at 5.521 kb on - strand, within GFF6341 at 5.595 kb on + strand at 5.595 kb on + strand at 5.596 kb on - strand at 5.596 kb on - strand at 5.596 kb on - strand at 5.596 kb on - strand at 5.796 kb on + strand at 5.797 kb on - strand at 5.810 kb on - strand at 5.865 kb on + strand at 5.865 kb on + strand at 5.866 kb on - strand at 5.930 kb on + strand at 5.931 kb on - strand at 5.931 kb on - strand at 5.931 kb on - strand at 5.931 kb on - strand at 5.988 kb on + strand at 5.988 kb on + strand at 5.989 kb on - strand at 5.989 kb on - strand at 5.989 kb on - strand at 6.044 kb on + strand at 6.045 kb on - strand at 6.052 kb on + strand at 6.052 kb on + strand at 6.053 kb on - strand at 6.053 kb on - strand at 6.053 kb on - strand at 6.053 kb on - strand at 6.061 kb on + strand at 6.061 kb on + strand at 6.080 kb on - strand at 6.080 kb on - strand at 6.080 kb on - strand at 6.103 kb on + strand at 6.104 kb on - strand at 6.104 kb on - strand at 6.104 kb on - strand at 6.213 kb on + strand at 6.213 kb on + strand at 6.214 kb on - strand at 6.214 kb on - strand at 6.214 kb on - strand at 6.214 kb on - strand at 6.214 kb on - strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.264 kb on - strand at 6.264 kb on - strand at 6.264 kb on - strand at 6.264 kb on - strand at 6.264 kb on - strand at 6.278 kb on + strand at 6.278 kb on + strand at 6.278 kb on + strand at 6.278 kb on + strand at 6.278 kb on + strand at 6.278 kb on + strand at 6.278 kb on + strand at 6.279 kb on - strand at 6.279 kb on - strand at 6.350 kb on - strand at 6.360 kb on + strand at 6.360 kb on + strand at 6.360 kb on + strand at 6.360 kb on + strand at 6.360 kb on + strand at 6.360 kb on + strand at 6.360 kb on + strand at 6.360 kb on + strand at 6.361 kb on - strand at 6.361 kb on - strand at 6.420 kb on + strand, within GFF6342 at 6.420 kb on + strand, within GFF6342 at 6.421 kb on - strand, within GFF6342 at 6.421 kb on - strand, within GFF6342 at 6.421 kb on - strand, within GFF6342 at 6.427 kb on + strand, within GFF6342 at 6.427 kb on + strand, within GFF6342 at 6.428 kb on - strand, within GFF6342
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 4,390 + +0.2 4,390 + -0.3 4,391 - -1.8 4,391 - -0.7 4,439 - +0.1 4,661 - +0.0 4,661 - +0.3 4,796 + -0.4 4,796 + -0.7 4,796 + -0.9 4,796 + +1.1 4,796 + +1.9 4,797 - -0.5 4,797 - -0.1 4,797 - -0.8 5,171 + -0.3 5,171 + -0.6 5,172 - -0.2 5,172 - +0.4 5,172 - -0.9 5,337 + GFF6341 0.17 +0.5 5,337 + GFF6341 0.17 +0.0 5,338 - GFF6341 0.18 -0.6 5,338 - GFF6341 0.18 +0.3 5,338 - GFF6341 0.18 -0.5 5,368 + GFF6341 0.29 +0.7 5,368 + GFF6341 0.29 +0.4 5,368 + GFF6341 0.29 +0.1 5,368 + GFF6341 0.29 +0.2 5,368 + GFF6341 0.29 -0.0 5,368 + GFF6341 0.29 +0.1 5,369 - GFF6341 0.30 +1.6 5,369 - GFF6341 0.30 +0.1 5,369 - GFF6341 0.30 +0.2 5,369 - GFF6341 0.30 +1.9 5,369 - GFF6341 0.30 +0.0 5,372 + GFF6341 0.31 -0.1 5,372 + GFF6341 0.31 -0.3 5,372 + GFF6341 0.31 -1.4 5,373 - GFF6341 0.31 -0.2 5,373 - GFF6341 0.31 -0.6 5,373 - GFF6341 0.31 +0.2 5,373 - GFF6341 0.31 +0.3 5,373 - GFF6341 0.31 +0.3 5,373 - GFF6341 0.31 +0.0 5,397 - GFF6341 0.41 -0.5 5,404 + GFF6341 0.43 +0.4 5,478 + GFF6341 0.72 +0.5 5,478 + GFF6341 0.72 +0.1 5,478 + GFF6341 0.72 +0.1 5,479 - GFF6341 0.72 -0.3 5,479 - GFF6341 0.72 -0.4 5,479 - GFF6341 0.72 +0.3 5,494 - GFF6341 0.78 -0.7 5,520 + GFF6341 0.88 +0.1 5,521 - GFF6341 0.89 -0.0 5,595 + +0.2 5,595 + -0.3 5,596 - -0.9 5,596 - +1.3 5,596 - -0.3 5,596 - -0.0 5,796 + +0.3 5,797 - -0.2 5,810 - -0.9 5,865 + -1.7 5,865 + -0.3 5,866 - -0.2 5,930 + -0.3 5,931 - -0.5 5,931 - +0.0 5,931 - -0.5 5,931 - +0.5 5,988 + -0.7 5,988 + -0.8 5,989 - +0.4 5,989 - +0.3 5,989 - -0.1 6,044 + -0.8 6,045 - -0.1 6,052 + -0.4 6,052 + -0.3 6,053 - +1.5 6,053 - +0.0 6,053 - +0.6 6,053 - -0.3 6,061 + -0.1 6,061 + -1.0 6,080 - -0.4 6,080 - -0.4 6,080 - +0.6 6,103 + +0.0 6,104 - -0.2 6,104 - -0.3 6,104 - -0.3 6,213 + -0.7 6,213 + -0.1 6,214 - +0.0 6,214 - -0.6 6,214 - +0.5 6,214 - -0.3 6,214 - -0.2 6,263 + -1.5 6,263 + +0.2 6,263 + -0.4 6,263 + +0.8 6,263 + +0.2 6,263 + -0.7 6,263 + +1.3 6,263 + -0.3 6,263 + -1.3 6,263 + +0.6 6,263 + +0.7 6,264 - +0.3 6,264 - +1.0 6,264 - -0.1 6,264 - +0.2 6,264 - +0.1 6,278 + +0.0 6,278 + -0.1 6,278 + -0.2 6,278 + -1.1 6,278 + +0.4 6,278 + -0.3 6,278 + +0.0 6,279 - +0.8 6,279 - -0.4 6,350 - +0.4 6,360 + -0.0 6,360 + -0.4 6,360 + +0.4 6,360 + +0.1 6,360 + +0.3 6,360 + -0.1 6,360 + -0.7 6,360 + -0.9 6,361 - +0.8 6,361 - +0.2 6,420 + GFF6342 0.21 +0.7 6,420 + GFF6342 0.21 -0.5 6,421 - GFF6342 0.21 +0.7 6,421 - GFF6342 0.21 -0.2 6,421 - GFF6342 0.21 +0.6 6,427 + GFF6342 0.23 -0.3 6,427 + GFF6342 0.23 -0.3 6,428 - GFF6342 0.23 -0.4
Or see this region's nucleotide sequence