Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6278 and GFF6279 overlap by 4 nucleotides GFF6279 and GFF6280 are separated by 176 nucleotides GFF6280 and GFF6281 are separated by 118 nucleotides
GFF6278 - Ferredoxin-dependent glutamate synthase (EC 1.4.7.1), at 67,827 to 69,557
GFF6278
GFF6279 - hypothetical protein, at 69,554 to 70,471
GFF6279
GFF6280 - FIG00348512: hypothetical protein, at 70,648 to 71,076
GFF6280
GFF6281 - hypothetical protein, at 71,195 to 71,698
GFF6281
Position (kb) 69
70
71 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 69.269 kb on + strand, within GFF6278 at 69.269 kb on + strand, within GFF6278 at 69.270 kb on - strand, within GFF6278 at 69.270 kb on - strand, within GFF6278 at 69.270 kb on - strand, within GFF6278 at 69.270 kb on - strand, within GFF6278 at 69.471 kb on + strand at 69.471 kb on + strand at 69.471 kb on + strand at 69.471 kb on + strand at 69.471 kb on + strand at 69.471 kb on + strand at 69.471 kb on + strand at 69.472 kb on - strand at 69.472 kb on - strand at 69.472 kb on - strand at 69.472 kb on - strand at 69.472 kb on - strand at 69.472 kb on - strand at 69.662 kb on + strand, within GFF6279 at 69.662 kb on + strand, within GFF6279 at 69.779 kb on + strand, within GFF6279 at 69.780 kb on - strand, within GFF6279 at 70.151 kb on + strand, within GFF6279 at 70.151 kb on + strand, within GFF6279 at 70.151 kb on + strand, within GFF6279 at 70.151 kb on + strand, within GFF6279 at 70.151 kb on + strand, within GFF6279 at 70.151 kb on + strand, within GFF6279 at 70.152 kb on - strand, within GFF6279 at 70.152 kb on - strand, within GFF6279 at 70.152 kb on - strand, within GFF6279 at 70.152 kb on - strand, within GFF6279 at 70.152 kb on - strand, within GFF6279 at 70.152 kb on - strand, within GFF6279 at 70.223 kb on + strand, within GFF6279 at 70.223 kb on + strand, within GFF6279 at 70.223 kb on + strand, within GFF6279 at 70.223 kb on + strand, within GFF6279 at 70.223 kb on + strand, within GFF6279 at 70.223 kb on + strand, within GFF6279 at 70.223 kb on + strand, within GFF6279 at 70.223 kb on + strand, within GFF6279 at 70.223 kb on + strand, within GFF6279 at 70.223 kb on + strand, within GFF6279 at 70.223 kb on + strand, within GFF6279 at 70.223 kb on + strand, within GFF6279 at 70.223 kb on + strand, within GFF6279 at 70.224 kb on - strand, within GFF6279 at 70.224 kb on - strand, within GFF6279 at 70.224 kb on - strand, within GFF6279 at 70.224 kb on - strand, within GFF6279 at 70.224 kb on - strand, within GFF6279 at 70.224 kb on - strand, within GFF6279 at 70.224 kb on - strand, within GFF6279 at 70.224 kb on - strand, within GFF6279 at 70.224 kb on - strand, within GFF6279 at 70.396 kb on + strand at 70.396 kb on + strand at 70.396 kb on + strand at 70.396 kb on + strand at 70.396 kb on + strand at 70.396 kb on + strand at 70.397 kb on - strand at 70.397 kb on - strand at 70.397 kb on - strand at 70.397 kb on - strand at 70.397 kb on - strand at 70.397 kb on - strand at 70.397 kb on - strand at 70.458 kb on + strand at 70.458 kb on + strand at 70.459 kb on - strand at 70.459 kb on - strand at 70.459 kb on - strand at 70.459 kb on - strand at 70.469 kb on + strand at 70.469 kb on + strand at 70.470 kb on - strand at 70.470 kb on - strand at 70.470 kb on - strand at 70.540 kb on + strand at 70.540 kb on + strand at 70.540 kb on + strand at 70.540 kb on + strand at 70.540 kb on + strand at 70.540 kb on + strand at 70.540 kb on + strand at 70.540 kb on + strand at 70.540 kb on + strand at 70.540 kb on + strand at 70.540 kb on + strand at 70.540 kb on + strand at 70.540 kb on + strand at 70.540 kb on + strand at 70.540 kb on + strand at 70.540 kb on + strand at 70.540 kb on + strand at 70.540 kb on + strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.541 kb on - strand at 70.542 kb on + strand at 70.542 kb on + strand at 70.543 kb on - strand at 70.543 kb on - strand at 70.543 kb on - strand at 70.543 kb on - strand at 70.559 kb on + strand at 70.559 kb on + strand at 70.559 kb on + strand at 70.559 kb on + strand at 70.559 kb on + strand at 70.559 kb on + strand at 70.559 kb on + strand at 70.559 kb on + strand at 70.559 kb on + strand at 70.559 kb on + strand at 70.559 kb on + strand at 70.559 kb on + strand at 70.559 kb on + strand at 70.559 kb on + strand at 70.559 kb on + strand at 70.559 kb on + strand at 70.560 kb on - strand at 70.560 kb on - strand at 70.560 kb on - strand at 70.560 kb on - strand at 70.560 kb on - strand at 70.560 kb on - strand at 70.560 kb on - strand at 70.560 kb on - strand at 70.560 kb on - strand at 70.560 kb on - strand at 70.560 kb on - strand at 70.560 kb on - strand at 70.604 kb on + strand at 70.604 kb on + strand at 70.604 kb on + strand at 70.604 kb on + strand at 70.605 kb on - strand at 70.605 kb on - strand at 70.605 kb on - strand at 70.605 kb on - strand at 70.605 kb on - strand at 70.605 kb on - strand at 70.605 kb on - strand at 70.605 kb on - strand at 70.624 kb on + strand at 70.624 kb on + strand at 70.624 kb on + strand at 70.625 kb on - strand at 70.625 kb on - strand at 70.625 kb on - strand at 70.625 kb on - strand at 70.633 kb on + strand at 70.633 kb on + strand at 70.633 kb on + strand at 70.633 kb on + strand at 70.633 kb on + strand at 70.633 kb on + strand at 70.633 kb on + strand at 70.634 kb on - strand at 70.634 kb on - strand at 70.634 kb on - strand at 70.634 kb on - strand at 70.908 kb on - strand, within GFF6280 at 71.093 kb on - strand at 71.166 kb on + strand at 71.166 kb on + strand at 71.166 kb on + strand at 71.166 kb on + strand at 71.166 kb on + strand at 71.166 kb on + strand at 71.166 kb on + strand at 71.166 kb on + strand at 71.166 kb on + strand at 71.166 kb on + strand at 71.167 kb on - strand at 71.167 kb on - strand at 71.167 kb on - strand at 71.167 kb on - strand at 71.167 kb on - strand at 71.167 kb on - strand at 71.167 kb on - strand at 71.167 kb on - strand at 71.167 kb on - strand at 71.206 kb on - strand at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.297 kb on + strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.298 kb on - strand, within GFF6281 at 71.456 kb on + strand, within GFF6281 at 71.456 kb on + strand, within GFF6281 at 71.456 kb on + strand, within GFF6281 at 71.456 kb on + strand, within GFF6281 at 71.456 kb on + strand, within GFF6281 at 71.456 kb on + strand, within GFF6281 at 71.456 kb on + strand, within GFF6281 at 71.456 kb on + strand, within GFF6281 at 71.456 kb on + strand, within GFF6281 at 71.456 kb on + strand, within GFF6281 at 71.456 kb on + strand, within GFF6281 at 71.456 kb on + strand, within GFF6281 at 71.456 kb on + strand, within GFF6281 at 71.457 kb on - strand, within GFF6281 at 71.457 kb on - strand, within GFF6281 at 71.457 kb on - strand, within GFF6281 at 71.457 kb on - strand, within GFF6281 at 71.457 kb on - strand, within GFF6281 at 71.457 kb on - strand, within GFF6281 at 71.457 kb on - strand, within GFF6281 at 71.457 kb on - strand, within GFF6281 at 71.471 kb on + strand, within GFF6281
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 69,269 + GFF6278 0.83 -0.6 69,269 + GFF6278 0.83 -0.6 69,270 - GFF6278 0.83 -0.6 69,270 - GFF6278 0.83 +0.0 69,270 - GFF6278 0.83 +0.2 69,270 - GFF6278 0.83 -1.1 69,471 + +2.0 69,471 + -0.4 69,471 + -0.2 69,471 + -1.2 69,471 + +0.0 69,471 + +0.1 69,471 + -0.3 69,472 - -0.0 69,472 - +0.3 69,472 - +0.4 69,472 - -0.3 69,472 - -0.2 69,472 - -1.0 69,662 + GFF6279 0.12 -0.8 69,662 + GFF6279 0.12 +0.3 69,779 + GFF6279 0.25 -1.6 69,780 - GFF6279 0.25 +0.2 70,151 + GFF6279 0.65 +1.4 70,151 + GFF6279 0.65 -0.4 70,151 + GFF6279 0.65 -0.3 70,151 + GFF6279 0.65 +1.3 70,151 + GFF6279 0.65 -0.3 70,151 + GFF6279 0.65 -2.2 70,152 - GFF6279 0.65 +0.6 70,152 - GFF6279 0.65 +0.6 70,152 - GFF6279 0.65 +0.4 70,152 - GFF6279 0.65 -0.2 70,152 - GFF6279 0.65 +1.0 70,152 - GFF6279 0.65 +0.6 70,223 + GFF6279 0.73 -0.8 70,223 + GFF6279 0.73 -0.1 70,223 + GFF6279 0.73 -1.2 70,223 + GFF6279 0.73 +0.8 70,223 + GFF6279 0.73 -0.6 70,223 + GFF6279 0.73 -1.0 70,223 + GFF6279 0.73 -0.5 70,223 + GFF6279 0.73 -0.0 70,223 + GFF6279 0.73 -0.3 70,223 + GFF6279 0.73 -0.3 70,223 + GFF6279 0.73 -1.9 70,223 + GFF6279 0.73 -0.3 70,223 + GFF6279 0.73 -0.3 70,224 - GFF6279 0.73 -0.1 70,224 - GFF6279 0.73 +0.1 70,224 - GFF6279 0.73 -0.6 70,224 - GFF6279 0.73 -0.5 70,224 - GFF6279 0.73 -0.4 70,224 - GFF6279 0.73 +0.2 70,224 - GFF6279 0.73 -1.2 70,224 - GFF6279 0.73 +1.4 70,224 - GFF6279 0.73 -0.8 70,396 + -2.1 70,396 + -0.8 70,396 + -0.1 70,396 + -0.6 70,396 + -1.2 70,396 + +0.1 70,397 - +0.2 70,397 - -0.8 70,397 - -1.8 70,397 - +1.0 70,397 - +0.1 70,397 - -0.6 70,397 - -0.1 70,458 + -0.5 70,458 + -0.8 70,459 - -1.1 70,459 - +1.0 70,459 - -1.3 70,459 - -0.6 70,469 + +0.2 70,469 + +0.4 70,470 - +1.1 70,470 - +0.1 70,470 - +0.0 70,540 + -0.3 70,540 + +0.6 70,540 + +0.0 70,540 + -0.8 70,540 + -0.4 70,540 + +0.2 70,540 + -0.5 70,540 + -0.6 70,540 + -0.6 70,540 + +0.1 70,540 + +2.3 70,540 + -0.8 70,540 + +0.3 70,540 + -1.2 70,540 + -0.9 70,540 + -0.5 70,540 + +0.6 70,540 + -0.8 70,541 - +0.4 70,541 - -0.2 70,541 - +0.0 70,541 - -1.0 70,541 - -0.4 70,541 - +2.0 70,541 - +0.0 70,541 - -0.4 70,541 - -0.5 70,541 - -0.3 70,541 - -0.7 70,541 - -0.1 70,541 - -0.3 70,541 - -1.7 70,541 - +0.6 70,541 - -0.3 70,541 - +0.5 70,541 - -0.2 70,541 - -0.2 70,541 - +0.1 70,541 - -0.4 70,542 + -0.1 70,542 + -0.4 70,543 - -0.2 70,543 - -0.7 70,543 - -0.2 70,543 - +0.4 70,559 + -0.8 70,559 + -1.0 70,559 + +0.3 70,559 + +0.2 70,559 + +0.0 70,559 + -0.5 70,559 + +0.2 70,559 + -0.3 70,559 + -0.2 70,559 + -0.7 70,559 + +0.1 70,559 + +0.0 70,559 + -0.4 70,559 + +0.4 70,559 + +0.1 70,559 + +0.6 70,560 - -0.2 70,560 - +0.3 70,560 - -0.1 70,560 - -0.5 70,560 - +0.4 70,560 - -0.7 70,560 - -0.1 70,560 - -0.4 70,560 - +0.7 70,560 - +1.8 70,560 - -0.8 70,560 - +0.0 70,604 + +1.4 70,604 + +0.1 70,604 + -1.0 70,604 + +0.7 70,605 - +1.2 70,605 - -1.0 70,605 - +0.4 70,605 - -1.3 70,605 - -0.4 70,605 - -0.1 70,605 - -0.3 70,605 - +0.3 70,624 + +1.3 70,624 + -0.2 70,624 + -0.7 70,625 - +0.3 70,625 - -0.4 70,625 - +0.1 70,625 - +0.7 70,633 + +2.0 70,633 + -0.3 70,633 + -0.5 70,633 + +0.6 70,633 + -1.0 70,633 + -0.4 70,633 + +0.4 70,634 - -0.1 70,634 - -1.7 70,634 - -1.2 70,634 - -0.7 70,908 - GFF6280 0.61 +0.8 71,093 - -0.2 71,166 + +0.3 71,166 + -0.1 71,166 + +0.5 71,166 + -0.2 71,166 + +0.1 71,166 + -1.0 71,166 + -0.4 71,166 + +0.6 71,166 + +0.2 71,166 + +0.6 71,167 - -0.4 71,167 - +0.1 71,167 - +0.0 71,167 - -0.1 71,167 - -0.1 71,167 - -0.8 71,167 - +0.4 71,167 - -0.4 71,167 - -0.6 71,206 - +0.6 71,297 + GFF6281 0.20 -1.8 71,297 + GFF6281 0.20 +0.5 71,297 + GFF6281 0.20 -0.1 71,297 + GFF6281 0.20 -0.1 71,297 + GFF6281 0.20 +0.4 71,297 + GFF6281 0.20 -0.3 71,297 + GFF6281 0.20 +0.3 71,297 + GFF6281 0.20 -0.9 71,297 + GFF6281 0.20 +0.3 71,297 + GFF6281 0.20 -0.4 71,297 + GFF6281 0.20 -0.8 71,297 + GFF6281 0.20 -0.6 71,297 + GFF6281 0.20 -0.7 71,297 + GFF6281 0.20 -0.7 71,297 + GFF6281 0.20 -0.0 71,297 + GFF6281 0.20 +0.2 71,297 + GFF6281 0.20 -0.2 71,297 + GFF6281 0.20 -1.0 71,297 + GFF6281 0.20 -0.4 71,297 + GFF6281 0.20 +0.7 71,297 + GFF6281 0.20 +0.0 71,297 + GFF6281 0.20 +0.4 71,297 + GFF6281 0.20 -0.3 71,297 + GFF6281 0.20 -0.5 71,297 + GFF6281 0.20 -0.4 71,297 + GFF6281 0.20 -0.8 71,297 + GFF6281 0.20 +0.1 71,297 + GFF6281 0.20 -0.7 71,297 + GFF6281 0.20 -0.6 71,297 + GFF6281 0.20 +0.4 71,297 + GFF6281 0.20 +1.3 71,297 + GFF6281 0.20 +0.3 71,297 + GFF6281 0.20 +0.2 71,297 + GFF6281 0.20 -0.2 71,297 + GFF6281 0.20 -1.2 71,297 + GFF6281 0.20 -0.5 71,298 - GFF6281 0.20 +1.2 71,298 - GFF6281 0.20 -1.3 71,298 - GFF6281 0.20 +0.1 71,298 - GFF6281 0.20 -0.4 71,298 - GFF6281 0.20 +0.0 71,298 - GFF6281 0.20 -0.2 71,298 - GFF6281 0.20 +0.7 71,298 - GFF6281 0.20 +0.1 71,298 - GFF6281 0.20 +1.8 71,298 - GFF6281 0.20 -1.0 71,298 - GFF6281 0.20 -1.3 71,298 - GFF6281 0.20 -0.7 71,298 - GFF6281 0.20 +1.4 71,298 - GFF6281 0.20 +0.4 71,298 - GFF6281 0.20 +0.2 71,298 - GFF6281 0.20 -0.2 71,298 - GFF6281 0.20 -0.2 71,298 - GFF6281 0.20 -0.3 71,298 - GFF6281 0.20 +0.6 71,298 - GFF6281 0.20 -0.6 71,298 - GFF6281 0.20 +2.8 71,298 - GFF6281 0.20 +0.0 71,298 - GFF6281 0.20 -0.4 71,298 - GFF6281 0.20 +0.4 71,298 - GFF6281 0.20 +2.4 71,298 - GFF6281 0.20 -0.3 71,298 - GFF6281 0.20 +0.4 71,456 + GFF6281 0.52 +0.2 71,456 + GFF6281 0.52 +0.3 71,456 + GFF6281 0.52 -0.3 71,456 + GFF6281 0.52 +1.2 71,456 + GFF6281 0.52 -0.2 71,456 + GFF6281 0.52 -0.3 71,456 + GFF6281 0.52 -0.1 71,456 + GFF6281 0.52 -1.2 71,456 + GFF6281 0.52 +0.8 71,456 + GFF6281 0.52 -0.3 71,456 + GFF6281 0.52 -0.2 71,456 + GFF6281 0.52 +0.4 71,456 + GFF6281 0.52 +0.2 71,457 - GFF6281 0.52 -1.0 71,457 - GFF6281 0.52 -0.1 71,457 - GFF6281 0.52 -0.3 71,457 - GFF6281 0.52 -0.7 71,457 - GFF6281 0.52 -0.1 71,457 - GFF6281 0.52 -0.4 71,457 - GFF6281 0.52 -0.8 71,457 - GFF6281 0.52 -0.8 71,471 + GFF6281 0.55 +0.4
Or see this region's nucleotide sequence