Strain Fitness in Variovorax sp. SCN45 around GFF6270

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6269 and GFF6270 are separated by 7 nucleotidesGFF6270 and GFF6272 are separated by 51 nucleotidesGFF6272 and GFF6271 overlap by 2 nucleotidesGFF6271 and GFF6273 are separated by 50 nucleotides GFF6269 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 60,475 to 62,187 GFF6269 GFF6270 - Uncharacterized MFS-type transporter, at 62,195 to 63,646 GFF6270 GFF6272 - no description, at 63,698 to 63,832 GFF6272 GFF6271 - Phosphatidylglycerophosphatase A (EC 3.1.3.27), at 63,831 to 64,358 GFF6271 GFF6273 - Nicotinamide-nucleotide amidase (EC 3.5.1.42), at 64,409 to 64,918 GFF6273 Position (kb) 62 63 64Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 61.333 kb on + strand, within GFF6269at 61.334 kb on - strand, within GFF6269at 61.451 kb on - strand, within GFF6269at 61.702 kb on + strand, within GFF6269at 61.702 kb on + strand, within GFF6269at 61.702 kb on + strand, within GFF6269at 61.703 kb on - strand, within GFF6269at 61.703 kb on - strand, within GFF6269at 61.703 kb on - strand, within GFF6269at 61.703 kb on - strand, within GFF6269at 61.703 kb on - strand, within GFF6269at 61.750 kb on + strand, within GFF6269at 61.756 kb on + strand, within GFF6269at 61.756 kb on + strand, within GFF6269at 61.756 kb on + strand, within GFF6269at 61.757 kb on - strand, within GFF6269at 61.757 kb on - strand, within GFF6269at 61.807 kb on + strand, within GFF6269at 61.807 kb on + strand, within GFF6269at 61.808 kb on - strand, within GFF6269at 61.888 kb on + strand, within GFF6269at 61.888 kb on + strand, within GFF6269at 61.888 kb on + strand, within GFF6269at 61.888 kb on + strand, within GFF6269at 61.889 kb on - strand, within GFF6269at 61.909 kb on + strand, within GFF6269at 61.909 kb on + strand, within GFF6269at 61.909 kb on + strand, within GFF6269at 61.910 kb on - strand, within GFF6269at 61.910 kb on - strand, within GFF6269at 61.910 kb on - strand, within GFF6269at 61.972 kb on + strand, within GFF6269at 61.972 kb on + strand, within GFF6269at 61.972 kb on + strand, within GFF6269at 61.972 kb on + strand, within GFF6269at 61.973 kb on - strand, within GFF6269at 61.973 kb on - strand, within GFF6269at 61.973 kb on - strand, within GFF6269at 61.973 kb on - strand, within GFF6269at 62.026 kb on + strandat 62.026 kb on + strandat 62.026 kb on + strandat 62.027 kb on - strandat 62.027 kb on - strandat 62.027 kb on - strandat 62.027 kb on - strandat 62.101 kb on + strandat 62.101 kb on + strandat 62.101 kb on + strandat 62.102 kb on - strandat 62.102 kb on - strandat 62.102 kb on - strandat 62.226 kb on + strandat 62.376 kb on + strand, within GFF6270at 62.377 kb on - strand, within GFF6270at 62.377 kb on - strand, within GFF6270at 62.691 kb on + strand, within GFF6270at 62.691 kb on + strand, within GFF6270at 62.692 kb on - strand, within GFF6270at 62.692 kb on - strand, within GFF6270at 62.692 kb on - strand, within GFF6270at 62.736 kb on + strand, within GFF6270at 62.737 kb on - strand, within GFF6270at 62.820 kb on + strand, within GFF6270at 62.820 kb on + strand, within GFF6270at 62.821 kb on - strand, within GFF6270at 62.821 kb on - strand, within GFF6270at 62.821 kb on - strand, within GFF6270at 63.240 kb on + strand, within GFF6270at 63.241 kb on - strand, within GFF6270at 63.241 kb on - strand, within GFF6270at 63.241 kb on - strand, within GFF6270at 63.459 kb on + strand, within GFF6270at 63.459 kb on + strand, within GFF6270at 63.460 kb on - strand, within GFF6270at 63.460 kb on - strand, within GFF6270at 63.685 kb on + strandat 63.685 kb on + strandat 63.685 kb on + strandat 63.686 kb on - strandat 63.686 kb on - strandat 63.686 kb on - strandat 63.686 kb on - strandat 63.686 kb on - strandat 63.686 kb on - strandat 63.703 kb on + strandat 63.703 kb on + strandat 63.704 kb on - strandat 63.712 kb on + strand, within GFF6272at 63.712 kb on + strand, within GFF6272at 63.712 kb on + strand, within GFF6272at 63.713 kb on - strand, within GFF6272at 63.713 kb on - strand, within GFF6272at 63.713 kb on - strand, within GFF6272at 63.713 kb on - strand, within GFF6272at 63.713 kb on - strand, within GFF6272at 63.724 kb on - strand, within GFF6272at 63.724 kb on - strand, within GFF6272at 63.727 kb on + strand, within GFF6272at 63.727 kb on + strand, within GFF6272at 63.727 kb on + strand, within GFF6272at 63.728 kb on - strand, within GFF6272at 64.191 kb on + strand, within GFF6271at 64.192 kb on - strand, within GFF6271at 64.356 kb on + strandat 64.356 kb on + strandat 64.356 kb on + strandat 64.357 kb on - strandat 64.357 kb on - strandat 64.357 kb on - strandat 64.357 kb on - strandat 64.357 kb on - strandat 64.357 kb on - strandat 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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61,333 + GFF6269 0.50 -1.1
61,334 - GFF6269 0.50 -0.7
61,451 - GFF6269 0.57 -0.1
61,702 + GFF6269 0.72 -1.1
61,702 + GFF6269 0.72 -2.1
61,702 + GFF6269 0.72 +0.6
61,703 - GFF6269 0.72 -0.3
61,703 - GFF6269 0.72 -0.2
61,703 - GFF6269 0.72 +0.1
61,703 - GFF6269 0.72 +0.5
61,703 - GFF6269 0.72 -0.2
61,750 + GFF6269 0.74 -1.2
61,756 + GFF6269 0.75 -0.3
61,756 + GFF6269 0.75 -0.5
61,756 + GFF6269 0.75 -0.6
61,757 - GFF6269 0.75 -0.3
61,757 - GFF6269 0.75 +0.5
61,807 + GFF6269 0.78 -0.3
61,807 + GFF6269 0.78 +0.1
61,808 - GFF6269 0.78 -1.3
61,888 + GFF6269 0.82 -1.0
61,888 + GFF6269 0.82 -0.5
61,888 + GFF6269 0.82 +0.0
61,888 + GFF6269 0.82 -0.2
61,889 - GFF6269 0.83 +1.6
61,909 + GFF6269 0.84 -0.3
61,909 + GFF6269 0.84 -1.1
61,909 + GFF6269 0.84 +0.1
61,910 - GFF6269 0.84 +0.3
61,910 - GFF6269 0.84 +0.3
61,910 - GFF6269 0.84 +0.3
61,972 + GFF6269 0.87 +0.6
61,972 + GFF6269 0.87 +0.1
61,972 + GFF6269 0.87 +0.4
61,972 + GFF6269 0.87 -0.6
61,973 - GFF6269 0.87 +0.1
61,973 - GFF6269 0.87 +1.4
61,973 - GFF6269 0.87 -0.5
61,973 - GFF6269 0.87 -0.2
62,026 + -0.3
62,026 + +0.1
62,026 + +1.2
62,027 - +1.0
62,027 - +0.6
62,027 - +0.4
62,027 - +0.7
62,101 + +0.0
62,101 + +0.0
62,101 + +0.2
62,102 - +1.0
62,102 - -0.6
62,102 - +0.1
62,226 + +0.1
62,376 + GFF6270 0.12 +0.2
62,377 - GFF6270 0.13 -0.8
62,377 - GFF6270 0.13 +1.4
62,691 + GFF6270 0.34 +0.2
62,691 + GFF6270 0.34 +0.1
62,692 - GFF6270 0.34 +0.4
62,692 - GFF6270 0.34 +0.5
62,692 - GFF6270 0.34 +0.4
62,736 + GFF6270 0.37 +0.7
62,737 - GFF6270 0.37 -0.2
62,820 + GFF6270 0.43 -0.2
62,820 + GFF6270 0.43 +0.1
62,821 - GFF6270 0.43 +0.3
62,821 - GFF6270 0.43 -0.6
62,821 - GFF6270 0.43 -1.4
63,240 + GFF6270 0.72 +0.8
63,241 - GFF6270 0.72 +4.7
63,241 - GFF6270 0.72 -0.6
63,241 - GFF6270 0.72 -0.2
63,459 + GFF6270 0.87 +0.0
63,459 + GFF6270 0.87 -0.2
63,460 - GFF6270 0.87 +0.1
63,460 - GFF6270 0.87 -0.7
63,685 + +0.4
63,685 + -0.7
63,685 + +2.0
63,686 - +0.1
63,686 - -0.0
63,686 - +0.2
63,686 - +0.8
63,686 - +1.0
63,686 - +0.9
63,703 + -0.2
63,703 + -1.0
63,704 - +1.2
63,712 + GFF6272 0.10 +0.0
63,712 + GFF6272 0.10 -0.8
63,712 + GFF6272 0.10 -0.7
63,713 - GFF6272 0.11 +1.3
63,713 - GFF6272 0.11 -0.4
63,713 - GFF6272 0.11 -0.3
63,713 - GFF6272 0.11 +0.0
63,713 - GFF6272 0.11 +1.3
63,724 - GFF6272 0.19 -0.2
63,724 - GFF6272 0.19 -0.6
63,727 + GFF6272 0.21 -0.6
63,727 + GFF6272 0.21 -1.3
63,727 + GFF6272 0.21 -0.1
63,728 - GFF6272 0.22 -0.3
64,191 + GFF6271 0.68 -0.8
64,192 - GFF6271 0.68 -0.3
64,356 + +0.1
64,356 + -0.6
64,356 + -1.1
64,357 - -1.1
64,357 - +0.4
64,357 - +0.4
64,357 - -1.0
64,357 - +1.0
64,357 - -0.1
64,589 + GFF6273 0.35 +0.1
64,589 + GFF6273 0.35 -1.7
64,589 + GFF6273 0.35 -0.3
64,589 + GFF6273 0.35 +0.2
64,589 + GFF6273 0.35 +0.4
64,589 + GFF6273 0.35 +0.6
64,590 - GFF6273 0.35 +0.3
64,590 - GFF6273 0.35 +1.3
64,590 - GFF6273 0.35 -0.2
64,590 - GFF6273 0.35 -0.3
64,590 - GFF6273 0.35 -1.2
64,590 - GFF6273 0.35 +0.7

Or see this region's nucleotide sequence