Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF625 and GFF626 are separated by 32 nucleotides GFF626 and GFF627 overlap by 4 nucleotides
GFF625 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 671,856 to 673,421
GFF625
GFF626 - CzcABC family efflux RND transporter, transmembrane protein, at 673,454 to 676,582
GFF626
GFF627 - Secretion protein HlyD, at 676,579 to 677,751
GFF627
Position (kb) 673
674
675
676
677 Strain fitness (log2 ratio) -2
-1
0
1 at 672.647 kb on - strand, within GFF625 at 672.784 kb on + strand, within GFF625 at 672.785 kb on - strand, within GFF625 at 672.785 kb on - strand, within GFF625 at 672.811 kb on + strand, within GFF625 at 672.812 kb on - strand, within GFF625 at 672.812 kb on - strand, within GFF625 at 672.907 kb on + strand, within GFF625 at 672.907 kb on + strand, within GFF625 at 672.908 kb on - strand, within GFF625 at 673.048 kb on + strand, within GFF625 at 673.334 kb on - strand at 675.096 kb on + strand, within GFF626 at 675.096 kb on + strand, within GFF626 at 675.097 kb on - strand, within GFF626 at 675.325 kb on + strand, within GFF626 at 675.326 kb on + strand, within GFF626 at 675.326 kb on + strand, within GFF626 at 675.326 kb on + strand, within GFF626 at 675.326 kb on + strand, within GFF626 at 675.327 kb on - strand, within GFF626 at 675.327 kb on - strand, within GFF626 at 675.625 kb on - strand, within GFF626 at 676.164 kb on + strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.170 kb on + strand, within GFF626 at 676.170 kb on + strand, within GFF626 at 676.171 kb on - strand, within GFF626 at 676.272 kb on + strand at 676.677 kb on - strand at 676.677 kb on - strand at 676.754 kb on + strand, within GFF627 at 676.761 kb on - strand, within GFF627 at 677.502 kb on - strand, within GFF627
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 672,647 - GFF625 0.51 -1.1 672,784 + GFF625 0.59 -0.4 672,785 - GFF625 0.59 +0.8 672,785 - GFF625 0.59 +0.2 672,811 + GFF625 0.61 +0.5 672,812 - GFF625 0.61 +0.5 672,812 - GFF625 0.61 -0.1 672,907 + GFF625 0.67 -0.1 672,907 + GFF625 0.67 -1.4 672,908 - GFF625 0.67 +0.0 673,048 + GFF625 0.76 +0.1 673,334 - +0.1 675,096 + GFF626 0.52 -2.4 675,096 + GFF626 0.52 +0.4 675,097 - GFF626 0.53 +0.2 675,325 + GFF626 0.60 +0.2 675,326 + GFF626 0.60 +0.5 675,326 + GFF626 0.60 -0.5 675,326 + GFF626 0.60 -2.0 675,326 + GFF626 0.60 -0.1 675,327 - GFF626 0.60 -0.2 675,327 - GFF626 0.60 -0.0 675,625 - GFF626 0.69 -0.2 676,164 + GFF626 0.87 +0.1 676,165 - GFF626 0.87 +0.5 676,165 - GFF626 0.87 +1.4 676,165 - GFF626 0.87 +0.4 676,165 - GFF626 0.87 -0.5 676,170 + GFF626 0.87 -0.0 676,170 + GFF626 0.87 -1.0 676,171 - GFF626 0.87 +0.2 676,272 + +0.6 676,677 - +0.3 676,677 - +0.4 676,754 + GFF627 0.15 +0.1 676,761 - GFF627 0.16 -0.1 677,502 - GFF627 0.79 +1.0
Or see this region's nucleotide sequence