Strain Fitness in Variovorax sp. SCN45 around GFF6238

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6237 and GFF6238 overlap by 1 nucleotidesGFF6238 and GFF6239 are separated by 16 nucleotides GFF6237 - hypothetical protein, at 28,746 to 29,813 GFF6237 GFF6238 - hypothetical protein, at 29,813 to 31,132 GFF6238 GFF6239 - Catalase KatE-intracellular protease (EC 1.11.1.6), at 31,149 to 33,368 GFF6239 Position (kb) 29 30 31 32Strain fitness (log2 ratio) -2 -1 0 1 2at 28.836 kb on + strandat 28.837 kb on - strandat 28.837 kb on - strandat 28.837 kb on - strandat 29.355 kb on + strand, within GFF6237at 29.356 kb on - strand, within GFF6237at 29.381 kb on - strand, within GFF6237at 29.419 kb on - strand, within GFF6237at 29.419 kb on - strand, within GFF6237at 29.419 kb on - strand, within GFF6237at 29.430 kb on + strand, within GFF6237at 29.437 kb on - strand, within GFF6237at 29.478 kb on + strand, within GFF6237at 29.507 kb on + strand, within GFF6237at 29.507 kb on + strand, within GFF6237at 29.572 kb on - strand, within GFF6237at 29.572 kb on - strand, within GFF6237at 29.793 kb on - strandat 29.793 kb on - strandat 29.793 kb on - strandat 29.793 kb on - strandat 29.807 kb on + strandat 29.808 kb on - strandat 29.895 kb on - strandat 29.895 kb on - strandat 29.930 kb on + strandat 29.931 kb on - strandat 29.931 kb on - strandat 29.942 kb on + strandat 29.942 kb on + strandat 29.942 kb on + strandat 29.942 kb on + strandat 29.942 kb on + strandat 29.942 kb on + strandat 29.942 kb on + strandat 29.943 kb on - strandat 29.943 kb on - strandat 29.948 kb on + strand, within GFF6238at 29.948 kb on + strand, within GFF6238at 29.948 kb on + strand, within GFF6238at 29.949 kb on - strand, within GFF6238at 29.966 kb on + strand, within GFF6238at 29.966 kb on + strand, within GFF6238at 29.967 kb on - strand, within GFF6238at 29.967 kb on - strand, within GFF6238at 29.967 kb on - strand, within GFF6238at 30.144 kb on - strand, within GFF6238at 30.146 kb on + strand, within GFF6238at 30.189 kb on + strand, within GFF6238at 30.197 kb on + strand, within GFF6238at 30.197 kb on + strand, within GFF6238at 30.198 kb on - strand, within GFF6238at 30.233 kb on + strand, within GFF6238at 30.234 kb on - strand, within GFF6238at 30.234 kb on - strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.353 kb on + strand, within GFF6238at 30.353 kb on + strand, within GFF6238at 30.392 kb on + strand, within GFF6238at 30.393 kb on - strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.428 kb on + strand, within GFF6238at 30.428 kb on + strand, within GFF6238at 30.500 kb on + strand, within GFF6238at 30.500 kb on + strand, within GFF6238at 30.501 kb on - strand, within GFF6238at 30.848 kb on + strand, within GFF6238at 30.849 kb on - strand, within GFF6238at 30.965 kb on + strand, within GFF6238at 30.965 kb on + strand, within GFF6238at 30.966 kb on - strand, within GFF6238at 30.966 kb on - strand, within GFF6238at 30.966 kb on - strand, within GFF6238at 30.966 kb on - strand, within GFF6238at 30.966 kb on - strand, within GFF6238at 30.966 kb on - strand, within GFF6238at 30.966 kb on - strand, within GFF6238at 31.090 kb on + strandat 31.090 kb on + strandat 31.094 kb on + strandat 31.384 kb on + strand, within GFF6239at 31.384 kb on + strand, within GFF6239at 31.385 kb on - strand, within GFF6239at 31.385 kb on - strand, within GFF6239at 32.086 kb on + strand, within GFF6239

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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28,836 + -0.6
28,837 - -0.3
28,837 - -0.5
28,837 - +0.7
29,355 + GFF6237 0.57 +2.0
29,356 - GFF6237 0.57 +0.3
29,381 - GFF6237 0.59 +1.2
29,419 - GFF6237 0.63 +0.8
29,419 - GFF6237 0.63 -0.6
29,419 - GFF6237 0.63 +0.7
29,430 + GFF6237 0.64 +0.2
29,437 - GFF6237 0.65 +0.2
29,478 + GFF6237 0.69 +2.0
29,507 + GFF6237 0.71 +0.1
29,507 + GFF6237 0.71 +0.2
29,572 - GFF6237 0.77 +0.0
29,572 - GFF6237 0.77 -0.2
29,793 - -0.7
29,793 - -0.8
29,793 - -0.9
29,793 - -0.6
29,807 + +0.1
29,808 - +0.1
29,895 - -0.1
29,895 - -0.7
29,930 + -1.4
29,931 - +0.2
29,931 - +1.4
29,942 + -0.3
29,942 + -0.4
29,942 + -0.2
29,942 + +0.2
29,942 + -0.4
29,942 + -0.6
29,942 + -0.2
29,943 - -0.1
29,943 - +0.9
29,948 + GFF6238 0.10 -0.8
29,948 + GFF6238 0.10 -0.4
29,948 + GFF6238 0.10 -0.5
29,949 - GFF6238 0.10 +0.4
29,966 + GFF6238 0.12 -1.6
29,966 + GFF6238 0.12 -0.3
29,967 - GFF6238 0.12 -1.4
29,967 - GFF6238 0.12 +2.3
29,967 - GFF6238 0.12 -1.2
30,144 - GFF6238 0.25 +0.3
30,146 + GFF6238 0.25 -0.2
30,189 + GFF6238 0.28 +0.4
30,197 + GFF6238 0.29 -0.1
30,197 + GFF6238 0.29 +0.0
30,198 - GFF6238 0.29 +0.2
30,233 + GFF6238 0.32 +0.9
30,234 - GFF6238 0.32 -1.8
30,234 - GFF6238 0.32 +0.1
30,344 + GFF6238 0.40 +0.8
30,344 + GFF6238 0.40 +0.1
30,344 + GFF6238 0.40 +1.4
30,344 + GFF6238 0.40 +1.4
30,344 + GFF6238 0.40 +0.2
30,344 + GFF6238 0.40 -0.5
30,344 + GFF6238 0.40 +0.1
30,344 + GFF6238 0.40 -0.3
30,344 + GFF6238 0.40 +0.5
30,344 + GFF6238 0.40 +0.8
30,344 + GFF6238 0.40 -0.7
30,344 + GFF6238 0.40 -0.7
30,345 - GFF6238 0.40 +0.2
30,345 - GFF6238 0.40 -1.1
30,345 - GFF6238 0.40 -0.6
30,345 - GFF6238 0.40 -0.3
30,345 - GFF6238 0.40 +0.3
30,345 - GFF6238 0.40 +0.0
30,345 - GFF6238 0.40 +0.0
30,345 - GFF6238 0.40 -1.6
30,353 + GFF6238 0.41 +1.4
30,353 + GFF6238 0.41 -0.2
30,392 + GFF6238 0.44 +0.1
30,393 - GFF6238 0.44 -1.6
30,417 + GFF6238 0.46 +0.1
30,417 + GFF6238 0.46 +1.1
30,417 + GFF6238 0.46 +0.6
30,417 + GFF6238 0.46 -0.1
30,417 + GFF6238 0.46 +0.0
30,417 + GFF6238 0.46 -0.5
30,418 - GFF6238 0.46 -0.9
30,418 - GFF6238 0.46 +0.0
30,418 - GFF6238 0.46 -0.3
30,418 - GFF6238 0.46 -0.3
30,418 - GFF6238 0.46 +0.2
30,418 - GFF6238 0.46 -0.7
30,428 + GFF6238 0.47 +0.4
30,428 + GFF6238 0.47 +1.4
30,500 + GFF6238 0.52 -0.5
30,500 + GFF6238 0.52 +0.1
30,501 - GFF6238 0.52 +0.1
30,848 + GFF6238 0.78 +0.2
30,849 - GFF6238 0.78 -0.1
30,965 + GFF6238 0.87 -0.0
30,965 + GFF6238 0.87 +0.1
30,966 - GFF6238 0.87 +0.0
30,966 - GFF6238 0.87 +0.0
30,966 - GFF6238 0.87 +0.4
30,966 - GFF6238 0.87 +0.4
30,966 - GFF6238 0.87 +0.6
30,966 - GFF6238 0.87 +0.2
30,966 - GFF6238 0.87 -0.8
31,090 + +0.9
31,090 + +0.6
31,094 + -0.4
31,384 + GFF6239 0.11 +0.8
31,384 + GFF6239 0.11 -0.8
31,385 - GFF6239 0.11 +0.2
31,385 - GFF6239 0.11 +0.4
32,086 + GFF6239 0.42 +0.1

Or see this region's nucleotide sequence