Strain Fitness in Variovorax sp. SCN45 around GFF6235

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6233 and GFF6234 are separated by 1 nucleotidesGFF6234 and GFF6235 overlap by 4 nucleotidesGFF6235 and GFF6236 are separated by 390 nucleotides GFF6233 - hypothetical protein, at 21,724 to 23,433 GFF6233 GFF6234 - hypothetical protein, at 23,435 to 23,584 GFF6234 GFF6235 - hypothetical protein, at 23,581 to 25,701 GFF6235 GFF6236 - VgrG protein, at 26,092 to 28,746 GFF6236 Position (kb) 23 24 25 26Strain fitness (log2 ratio) -2 -1 0 1at 22.586 kb on + strand, within GFF6233at 22.587 kb on - strand, within GFF6233at 22.698 kb on - strand, within GFF6233at 22.721 kb on + strand, within GFF6233at 22.721 kb on + strand, within GFF6233at 22.722 kb on - strand, within GFF6233at 23.133 kb on - strand, within GFF6233at 23.133 kb on - strand, within GFF6233at 23.407 kb on - strandat 23.483 kb on - strand, within GFF6234at 23.601 kb on + strandat 23.601 kb on + strandat 23.602 kb on - strandat 23.704 kb on + strandat 23.704 kb on + strandat 23.705 kb on - strandat 23.705 kb on - strandat 23.705 kb on - strandat 23.705 kb on - strandat 23.705 kb on - strandat 23.984 kb on + strand, within GFF6235at 23.985 kb on - strand, within GFF6235at 23.985 kb on - strand, within GFF6235at 24.089 kb on + strand, within GFF6235at 24.089 kb on + strand, within GFF6235at 24.089 kb on + strand, within GFF6235at 24.089 kb on + strand, within GFF6235at 24.089 kb on + strand, within GFF6235at 24.089 kb on + strand, within GFF6235at 24.089 kb on + strand, within GFF6235at 24.089 kb on + strand, within GFF6235at 24.090 kb on - strand, within GFF6235at 24.090 kb on - strand, within GFF6235at 24.090 kb on - strand, within GFF6235at 24.090 kb on - strand, within GFF6235at 24.090 kb on - strand, within GFF6235at 24.097 kb on - strand, within GFF6235at 24.097 kb on - strand, within GFF6235at 24.155 kb on + strand, within GFF6235at 24.155 kb on + strand, within GFF6235at 24.156 kb on - strand, within GFF6235at 24.156 kb on - strand, within GFF6235at 24.156 kb on - strand, within GFF6235at 24.282 kb on - strand, within GFF6235at 24.318 kb on - strand, within GFF6235at 24.318 kb on - strand, within GFF6235at 24.318 kb on - strand, within GFF6235at 24.728 kb on + strand, within GFF6235at 24.729 kb on - strand, within GFF6235at 24.917 kb on + strand, within GFF6235at 24.918 kb on - strand, within GFF6235at 24.918 kb on - strand, within GFF6235at 24.920 kb on + strand, within GFF6235at 24.920 kb on + strand, within GFF6235at 24.920 kb on + strand, within GFF6235at 24.921 kb on - strand, within GFF6235at 24.921 kb on - strand, within GFF6235at 24.921 kb on - strand, within GFF6235at 24.921 kb on - strand, within GFF6235at 24.921 kb on - strand, within GFF6235at 24.921 kb on - strand, within GFF6235at 24.921 kb on - strand, within GFF6235at 25.146 kb on - strand, within GFF6235at 25.178 kb on + strand, within GFF6235at 25.178 kb on + strand, within GFF6235at 25.179 kb on - strand, within GFF6235at 25.179 kb on - strand, within GFF6235at 25.179 kb on - strand, within GFF6235at 25.236 kb on + strand, within GFF6235at 25.236 kb on + strand, within GFF6235at 25.237 kb on - strand, within GFF6235at 25.237 kb on - strand, within GFF6235at 25.328 kb on + strand, within GFF6235at 25.328 kb on + strand, within GFF6235at 25.329 kb on - strand, within GFF6235at 25.335 kb on - strand, within GFF6235at 25.335 kb on - strand, within GFF6235at 25.475 kb on + strand, within GFF6235at 25.475 kb on + strand, within GFF6235at 25.511 kb on + strandat 25.850 kb on + strandat 25.883 kb on - strandat 25.883 kb on - strandat 25.889 kb on + strandat 25.895 kb on + strandat 26.025 kb on - strandat 26.035 kb on - strandat 26.344 kb on + strandat 26.344 kb on + strandat 26.345 kb on - strandat 26.345 kb on - strandat 26.345 kb on - strandat 26.345 kb on - strandat 26.488 kb on + strand, within GFF6236at 26.489 kb on - strand, within GFF6236at 26.489 kb on - strand, within GFF6236at 26.503 kb on + strand, within GFF6236at 26.503 kb on + strand, within GFF6236at 26.504 kb on - strand, within GFF6236at 26.515 kb on + strand, within GFF6236at 26.549 kb on + strand, within GFF6236at 26.550 kb on - strand, within GFF6236

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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22,586 + GFF6233 0.50 +0.1
22,587 - GFF6233 0.50 -0.2
22,698 - GFF6233 0.57 +0.0
22,721 + GFF6233 0.58 +0.3
22,721 + GFF6233 0.58 -0.6
22,722 - GFF6233 0.58 +0.3
23,133 - GFF6233 0.82 +1.3
23,133 - GFF6233 0.82 +0.1
23,407 - +0.8
23,483 - GFF6234 0.32 +0.0
23,601 + +0.5
23,601 + -0.6
23,602 - -0.3
23,704 + +0.8
23,704 + +0.8
23,705 - -0.4
23,705 - +0.7
23,705 - -0.6
23,705 - +0.2
23,705 - +0.1
23,984 + GFF6235 0.19 -0.1
23,985 - GFF6235 0.19 -0.1
23,985 - GFF6235 0.19 +1.4
24,089 + GFF6235 0.24 -0.0
24,089 + GFF6235 0.24 +0.2
24,089 + GFF6235 0.24 +0.1
24,089 + GFF6235 0.24 +0.7
24,089 + GFF6235 0.24 +1.3
24,089 + GFF6235 0.24 +0.6
24,089 + GFF6235 0.24 -1.2
24,089 + GFF6235 0.24 -0.3
24,090 - GFF6235 0.24 +0.1
24,090 - GFF6235 0.24 +0.5
24,090 - GFF6235 0.24 -0.8
24,090 - GFF6235 0.24 -1.4
24,090 - GFF6235 0.24 +0.2
24,097 - GFF6235 0.24 -0.4
24,097 - GFF6235 0.24 +0.2
24,155 + GFF6235 0.27 +0.6
24,155 + GFF6235 0.27 +1.2
24,156 - GFF6235 0.27 -0.2
24,156 - GFF6235 0.27 +0.8
24,156 - GFF6235 0.27 -0.6
24,282 - GFF6235 0.33 -0.3
24,318 - GFF6235 0.35 -0.8
24,318 - GFF6235 0.35 -1.2
24,318 - GFF6235 0.35 +0.4
24,728 + GFF6235 0.54 +0.0
24,729 - GFF6235 0.54 -2.2
24,917 + GFF6235 0.63 +0.3
24,918 - GFF6235 0.63 +0.9
24,918 - GFF6235 0.63 -0.8
24,920 + GFF6235 0.63 -0.7
24,920 + GFF6235 0.63 +0.2
24,920 + GFF6235 0.63 -0.8
24,921 - GFF6235 0.63 -0.1
24,921 - GFF6235 0.63 -0.3
24,921 - GFF6235 0.63 -0.4
24,921 - GFF6235 0.63 -0.4
24,921 - GFF6235 0.63 +1.6
24,921 - GFF6235 0.63 -0.2
24,921 - GFF6235 0.63 -0.1
25,146 - GFF6235 0.74 -0.0
25,178 + GFF6235 0.75 -0.7
25,178 + GFF6235 0.75 +1.4
25,179 - GFF6235 0.75 -0.0
25,179 - GFF6235 0.75 -0.6
25,179 - GFF6235 0.75 -0.4
25,236 + GFF6235 0.78 -0.2
25,236 + GFF6235 0.78 -0.8
25,237 - GFF6235 0.78 -0.4
25,237 - GFF6235 0.78 +0.1
25,328 + GFF6235 0.82 +0.3
25,328 + GFF6235 0.82 -0.4
25,329 - GFF6235 0.82 -0.4
25,335 - GFF6235 0.83 -0.2
25,335 - GFF6235 0.83 +1.0
25,475 + GFF6235 0.89 +0.3
25,475 + GFF6235 0.89 -0.6
25,511 + -0.1
25,850 + -0.5
25,883 - +0.2
25,883 - +0.1
25,889 + -0.0
25,895 + +1.4
26,025 - -0.1
26,035 - -0.3
26,344 + -0.4
26,344 + +0.2
26,345 - +1.2
26,345 - +0.0
26,345 - -0.2
26,345 - +0.1
26,488 + GFF6236 0.15 +0.2
26,489 - GFF6236 0.15 +0.1
26,489 - GFF6236 0.15 -0.1
26,503 + GFF6236 0.15 -1.3
26,503 + GFF6236 0.15 -0.2
26,504 - GFF6236 0.16 -0.7
26,515 + GFF6236 0.16 +0.2
26,549 + GFF6236 0.17 -0.8
26,550 - GFF6236 0.17 -0.3

Or see this region's nucleotide sequence