Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6228 and GFF6229 overlap by 4 nucleotides GFF6229 and GFF6230 are separated by 13 nucleotides
GFF6228 - ABC transporter, substrate-binding protein (cluster 15, trp?), at 11,464 to 12,570
GFF6228
GFF6229 - hypothetical protein, at 12,567 to 14,549
GFF6229
GFF6230 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 14,563 to 15,540
GFF6230
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.163 kb on + strand, within GFF6228 at 13.116 kb on + strand, within GFF6229 at 13.116 kb on + strand, within GFF6229 at 13.117 kb on - strand, within GFF6229 at 13.965 kb on + strand, within GFF6229 at 13.965 kb on + strand, within GFF6229 at 13.965 kb on + strand, within GFF6229 at 13.965 kb on + strand, within GFF6229 at 13.965 kb on + strand, within GFF6229 at 13.965 kb on + strand, within GFF6229 at 13.966 kb on - strand, within GFF6229 at 14.316 kb on + strand, within GFF6229 at 14.317 kb on - strand, within GFF6229 at 14.317 kb on - strand, within GFF6229 at 14.930 kb on + strand, within GFF6230 at 14.930 kb on + strand, within GFF6230 at 14.931 kb on - strand, within GFF6230 at 14.931 kb on - strand, within GFF6230 at 14.931 kb on - strand, within GFF6230 at 14.931 kb on - strand, within GFF6230 at 15.086 kb on + strand, within GFF6230 at 15.086 kb on + strand, within GFF6230 at 15.086 kb on + strand, within GFF6230 at 15.086 kb on + strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 12,163 + GFF6228 0.63 -0.6 13,116 + GFF6229 0.28 -0.7 13,116 + GFF6229 0.28 -1.0 13,117 - GFF6229 0.28 -0.8 13,965 + GFF6229 0.70 +1.4 13,965 + GFF6229 0.70 -1.3 13,965 + GFF6229 0.70 -1.8 13,965 + GFF6229 0.70 +0.1 13,965 + GFF6229 0.70 -0.1 13,965 + GFF6229 0.70 -1.7 13,966 - GFF6229 0.71 +0.9 14,316 + GFF6229 0.88 -0.3 14,317 - GFF6229 0.88 -0.3 14,317 - GFF6229 0.88 -0.7 14,930 + GFF6230 0.38 -0.6 14,930 + GFF6230 0.38 +0.4 14,931 - GFF6230 0.38 -0.6 14,931 - GFF6230 0.38 +0.1 14,931 - GFF6230 0.38 +0.1 14,931 - GFF6230 0.38 +0.2 15,086 + GFF6230 0.53 +0.6 15,086 + GFF6230 0.53 -0.3 15,086 + GFF6230 0.53 -0.4 15,086 + GFF6230 0.53 +2.3 15,087 - GFF6230 0.54 +0.1 15,087 - GFF6230 0.54 -0.3 15,087 - GFF6230 0.54 -0.4 15,087 - GFF6230 0.54 -0.8 15,087 - GFF6230 0.54 -1.4 15,087 - GFF6230 0.54 +0.8 15,087 - GFF6230 0.54 +0.4 15,087 - GFF6230 0.54 +0.0 15,087 - GFF6230 0.54 +0.1
Or see this region's nucleotide sequence