Strain Fitness in Variovorax sp. SCN45 around GFF620

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF619 and GFF620 are separated by 54 nucleotidesGFF620 and GFF621 are separated by 153 nucleotides GFF619 - Aspartate carbamoyltransferase (EC 2.1.3.2), at 665,856 to 667,154 GFF619 GFF620 - Transcriptional regulator, LysR family, at 667,209 to 668,213 GFF620 GFF621 - Aspartate aminotransferase (EC 2.6.1.1), at 668,367 to 669,545 GFF621 Position (kb) 667 668 669Strain fitness (log2 ratio) -2 -1 0 1 2 3at 666.211 kb on + strand, within GFF619at 666.211 kb on + strand, within GFF619at 666.352 kb on + strand, within GFF619at 666.352 kb on + strand, within GFF619at 666.352 kb on + strand, within GFF619at 666.353 kb on - strand, within GFF619at 666.353 kb on - strand, within GFF619at 666.353 kb on - strand, within GFF619at 666.353 kb on - strand, within GFF619at 666.353 kb on - strand, within GFF619at 666.394 kb on + strand, within GFF619at 666.395 kb on - strand, within GFF619at 666.472 kb on + strand, within GFF619at 666.472 kb on + strand, within GFF619at 666.472 kb on + strand, within GFF619at 666.473 kb on - strand, within GFF619at 666.473 kb on - strand, within GFF619at 666.473 kb on - strand, within GFF619at 666.604 kb on + strand, within GFF619at 666.605 kb on - strand, within GFF619at 666.632 kb on - strand, within GFF619at 666.942 kb on - strand, within GFF619at 666.943 kb on + strand, within GFF619at 667.165 kb on + strandat 667.165 kb on + strandat 667.399 kb on + strand, within GFF620at 667.483 kb on + strand, within GFF620at 667.483 kb on + strand, within GFF620at 667.483 kb on + strand, within GFF620at 667.484 kb on - strand, within GFF620at 667.484 kb on - strand, within GFF620at 667.484 kb on - strand, within GFF620at 667.603 kb on + strand, within GFF620at 667.603 kb on + strand, within GFF620at 667.603 kb on + strand, within GFF620at 667.603 kb on + strand, within GFF620at 667.604 kb on - strand, within GFF620at 667.604 kb on - strand, within GFF620at 667.604 kb on - strand, within GFF620at 667.604 kb on - strand, within GFF620at 667.881 kb on + strand, within GFF620at 667.881 kb on + strand, within GFF620at 667.882 kb on - strand, within GFF620at 667.882 kb on - strand, within GFF620at 667.882 kb on - strand, within GFF620at 668.226 kb on + strandat 668.227 kb on - strandat 668.227 kb on - strandat 668.227 kb on - strandat 668.227 kb on - strandat 668.306 kb on + strandat 668.307 kb on - strandat 668.580 kb on + strand, within GFF621at 668.856 kb on + strand, within GFF621at 668.856 kb on + strand, within GFF621at 668.856 kb on + strand, within GFF621at 668.856 kb on + strand, within GFF621at 668.857 kb on - strand, within GFF621at 668.857 kb on - strand, within GFF621at 668.857 kb on - strand, within GFF621at 668.857 kb on - strand, within GFF621at 668.857 kb on - strand, within GFF621at 668.857 kb on - strand, within GFF621at 668.857 kb on - strand, within GFF621at 668.864 kb on + strand, within GFF621at 668.864 kb on + strand, within GFF621at 668.934 kb on + strand, within GFF621at 668.934 kb on + strand, within GFF621at 668.934 kb on + strand, within GFF621at 668.934 kb on + strand, within GFF621at 668.934 kb on + strand, within GFF621at 668.934 kb on + strand, within GFF621at 668.935 kb on - strand, within GFF621at 668.949 kb on + strand, within GFF621at 668.949 kb on + strand, within GFF621at 668.949 kb on + strand, within GFF621at 668.950 kb on - strand, within GFF621at 668.950 kb on - strand, within GFF621at 669.036 kb on + strand, within GFF621at 669.037 kb on - strand, within GFF621

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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666,211 + GFF619 0.27 -0.1
666,211 + GFF619 0.27 -0.3
666,352 + GFF619 0.38 +0.6
666,352 + GFF619 0.38 +1.0
666,352 + GFF619 0.38 +1.8
666,353 - GFF619 0.38 +0.4
666,353 - GFF619 0.38 +0.8
666,353 - GFF619 0.38 -0.8
666,353 - GFF619 0.38 -0.8
666,353 - GFF619 0.38 -0.5
666,394 + GFF619 0.41 -0.5
666,395 - GFF619 0.41 -0.3
666,472 + GFF619 0.47 -0.3
666,472 + GFF619 0.47 -1.5
666,472 + GFF619 0.47 +0.8
666,473 - GFF619 0.47 +1.8
666,473 - GFF619 0.47 +0.4
666,473 - GFF619 0.47 -1.0
666,604 + GFF619 0.58 +0.0
666,605 - GFF619 0.58 +0.0
666,632 - GFF619 0.60 -0.4
666,942 - GFF619 0.84 -1.5
666,943 + GFF619 0.84 -0.3
667,165 + -0.2
667,165 + +0.2
667,399 + GFF620 0.19 -0.3
667,483 + GFF620 0.27 +3.4
667,483 + GFF620 0.27 +0.6
667,483 + GFF620 0.27 +0.0
667,484 - GFF620 0.27 -0.0
667,484 - GFF620 0.27 -0.9
667,484 - GFF620 0.27 -1.9
667,603 + GFF620 0.39 +0.2
667,603 + GFF620 0.39 -0.3
667,603 + GFF620 0.39 -0.4
667,603 + GFF620 0.39 +0.6
667,604 - GFF620 0.39 +1.2
667,604 - GFF620 0.39 +0.1
667,604 - GFF620 0.39 -0.2
667,604 - GFF620 0.39 +0.2
667,881 + GFF620 0.67 -2.3
667,881 + GFF620 0.67 +0.4
667,882 - GFF620 0.67 +1.0
667,882 - GFF620 0.67 -0.1
667,882 - GFF620 0.67 +0.4
668,226 + +1.2
668,227 - +0.7
668,227 - +0.8
668,227 - -0.2
668,227 - -0.5
668,306 + -2.0
668,307 - -1.2
668,580 + GFF621 0.18 -0.4
668,856 + GFF621 0.41 -0.2
668,856 + GFF621 0.41 -0.3
668,856 + GFF621 0.41 +0.2
668,856 + GFF621 0.41 +0.0
668,857 - GFF621 0.42 -0.3
668,857 - GFF621 0.42 -0.3
668,857 - GFF621 0.42 -0.8
668,857 - GFF621 0.42 -0.4
668,857 - GFF621 0.42 -1.0
668,857 - GFF621 0.42 -0.1
668,857 - GFF621 0.42 -0.0
668,864 + GFF621 0.42 -0.0
668,864 + GFF621 0.42 -0.5
668,934 + GFF621 0.48 -0.1
668,934 + GFF621 0.48 +0.4
668,934 + GFF621 0.48 +0.3
668,934 + GFF621 0.48 +0.5
668,934 + GFF621 0.48 +0.0
668,934 + GFF621 0.48 +0.0
668,935 - GFF621 0.48 -1.7
668,949 + GFF621 0.49 +1.0
668,949 + GFF621 0.49 -0.5
668,949 + GFF621 0.49 -1.7
668,950 - GFF621 0.49 -0.1
668,950 - GFF621 0.49 -0.4
669,036 + GFF621 0.57 +0.1
669,037 - GFF621 0.57 -1.3

Or see this region's nucleotide sequence