Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6142 and GFF6143 overlap by 4 nucleotides GFF6143 and GFF6144 are separated by 178 nucleotides
GFF6142 - 2-aminoethylphosphonate ABC transporter permease protein, at 45,290 to 47,023
GFF6142
GFF6143 - 2-aminoethylphosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1), at 47,020 to 48,156
GFF6143
GFF6144 - 2-aminoethylphosphonate ABC transporter substrate-binding protein, at 48,335 to 49,375
GFF6144
Position (kb) 47
48
49 Strain fitness (log2 ratio) -2
-1
0
1
2 at 46.032 kb on + strand, within GFF6142 at 46.129 kb on - strand, within GFF6142 at 46.179 kb on + strand, within GFF6142 at 46.180 kb on - strand, within GFF6142 at 46.341 kb on + strand, within GFF6142 at 46.341 kb on + strand, within GFF6142 at 46.342 kb on - strand, within GFF6142 at 46.377 kb on + strand, within GFF6142 at 46.450 kb on - strand, within GFF6142 at 46.515 kb on + strand, within GFF6142 at 46.548 kb on + strand, within GFF6142 at 46.548 kb on + strand, within GFF6142 at 46.549 kb on - strand, within GFF6142 at 46.711 kb on - strand, within GFF6142 at 46.809 kb on + strand, within GFF6142 at 46.810 kb on - strand, within GFF6142 at 47.282 kb on + strand, within GFF6143 at 47.441 kb on + strand, within GFF6143 at 47.441 kb on + strand, within GFF6143 at 47.442 kb on - strand, within GFF6143 at 47.717 kb on + strand, within GFF6143 at 47.718 kb on - strand, within GFF6143 at 47.718 kb on - strand, within GFF6143 at 47.855 kb on + strand, within GFF6143 at 47.855 kb on + strand, within GFF6143 at 48.151 kb on - strand at 48.336 kb on + strand at 48.336 kb on + strand at 48.441 kb on + strand, within GFF6144 at 48.441 kb on + strand, within GFF6144 at 48.441 kb on + strand, within GFF6144 at 48.442 kb on - strand, within GFF6144 at 48.442 kb on - strand, within GFF6144 at 48.483 kb on + strand, within GFF6144 at 48.750 kb on + strand, within GFF6144 at 48.751 kb on - strand, within GFF6144 at 48.751 kb on - strand, within GFF6144 at 48.783 kb on + strand, within GFF6144 at 48.783 kb on + strand, within GFF6144 at 48.783 kb on + strand, within GFF6144 at 48.784 kb on - strand, within GFF6144 at 48.784 kb on - strand, within GFF6144 at 48.784 kb on - strand, within GFF6144 at 48.784 kb on - strand, within GFF6144 at 48.837 kb on + strand, within GFF6144 at 48.838 kb on - strand, within GFF6144 at 48.885 kb on + strand, within GFF6144 at 48.885 kb on + strand, within GFF6144 at 48.885 kb on + strand, within GFF6144 at 48.885 kb on + strand, within GFF6144 at 48.886 kb on - strand, within GFF6144 at 49.020 kb on + strand, within GFF6144 at 49.020 kb on + strand, within GFF6144 at 49.020 kb on + strand, within GFF6144 at 49.057 kb on - strand, within GFF6144
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 46,032 + GFF6142 0.43 -0.1 46,129 - GFF6142 0.48 +0.9 46,179 + GFF6142 0.51 -0.6 46,180 - GFF6142 0.51 +0.1 46,341 + GFF6142 0.61 -0.0 46,341 + GFF6142 0.61 +0.7 46,342 - GFF6142 0.61 -0.5 46,377 + GFF6142 0.63 +0.4 46,450 - GFF6142 0.67 -0.2 46,515 + GFF6142 0.71 -1.3 46,548 + GFF6142 0.73 -0.1 46,548 + GFF6142 0.73 +0.3 46,549 - GFF6142 0.73 -0.6 46,711 - GFF6142 0.82 -0.4 46,809 + GFF6142 0.88 +0.2 46,810 - GFF6142 0.88 +0.0 47,282 + GFF6143 0.23 +1.3 47,441 + GFF6143 0.37 +1.4 47,441 + GFF6143 0.37 +0.3 47,442 - GFF6143 0.37 +1.6 47,717 + GFF6143 0.61 -0.5 47,718 - GFF6143 0.61 -0.0 47,718 - GFF6143 0.61 -0.3 47,855 + GFF6143 0.73 +0.3 47,855 + GFF6143 0.73 +1.5 48,151 - +0.3 48,336 + +1.9 48,336 + -0.6 48,441 + GFF6144 0.10 +0.9 48,441 + GFF6144 0.10 -1.0 48,441 + GFF6144 0.10 -0.8 48,442 - GFF6144 0.10 -1.9 48,442 - GFF6144 0.10 -0.3 48,483 + GFF6144 0.14 -0.5 48,750 + GFF6144 0.40 +2.3 48,751 - GFF6144 0.40 +0.4 48,751 - GFF6144 0.40 -0.2 48,783 + GFF6144 0.43 -0.5 48,783 + GFF6144 0.43 +0.6 48,783 + GFF6144 0.43 -0.3 48,784 - GFF6144 0.43 +0.6 48,784 - GFF6144 0.43 -0.1 48,784 - GFF6144 0.43 +0.6 48,784 - GFF6144 0.43 -0.4 48,837 + GFF6144 0.48 -0.2 48,838 - GFF6144 0.48 -0.3 48,885 + GFF6144 0.53 -0.0 48,885 + GFF6144 0.53 -0.9 48,885 + GFF6144 0.53 -0.4 48,885 + GFF6144 0.53 -0.6 48,886 - GFF6144 0.53 -0.1 49,020 + GFF6144 0.66 -0.3 49,020 + GFF6144 0.66 -1.0 49,020 + GFF6144 0.66 +0.8 49,057 - GFF6144 0.69 -0.1
Or see this region's nucleotide sequence