Strain Fitness in Variovorax sp. SCN45 around GFF6137

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6136 and GFF6137 are separated by 70 nucleotidesGFF6137 and GFF6138 are separated by 20 nucleotidesGFF6138 and GFF6139 are separated by 161 nucleotides GFF6136 - TRAP transporter solute receptor, unknown substrate 6, at 37,502 to 38,584 GFF6136 GFF6137 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6, at 38,655 to 40,493 GFF6137 GFF6138 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 6, at 40,514 to 41,140 GFF6138 GFF6139 - Serine/threonine kinase, at 41,302 to 42,588 GFF6139 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -2 -1 0 1at 37.790 kb on + strand, within GFF6136at 37.791 kb on - strand, within GFF6136at 37.791 kb on - strand, within GFF6136at 37.793 kb on + strand, within GFF6136at 37.793 kb on + strand, within GFF6136at 37.793 kb on + strand, within GFF6136at 37.793 kb on + strand, within GFF6136at 37.793 kb on + strand, within GFF6136at 37.793 kb on + strand, within GFF6136at 37.793 kb on + strand, within GFF6136at 37.794 kb on - strand, within GFF6136at 37.794 kb on - strand, within GFF6136at 37.794 kb on - strand, within GFF6136at 37.794 kb on - strand, within GFF6136at 37.794 kb on - strand, within GFF6136at 37.794 kb on - strand, within GFF6136at 37.880 kb on + strand, within GFF6136at 37.881 kb on - strand, within GFF6136at 37.922 kb on + strand, within GFF6136at 37.922 kb on + strand, within GFF6136at 37.922 kb on + strand, within GFF6136at 37.922 kb on + strand, within GFF6136at 37.923 kb on - strand, within GFF6136at 37.923 kb on - strand, within GFF6136at 37.923 kb on - strand, within GFF6136at 37.923 kb on - strand, within GFF6136at 37.977 kb on - strand, within GFF6136at 38.103 kb on - strand, within GFF6136at 38.103 kb on - strand, within GFF6136at 38.103 kb on - strand, within GFF6136at 38.103 kb on - strand, within GFF6136at 38.103 kb on - strand, within GFF6136at 38.192 kb on + strand, within GFF6136at 38.192 kb on + strand, within GFF6136at 38.192 kb on + strand, within GFF6136at 38.192 kb on + strand, within GFF6136at 38.193 kb on - strand, within GFF6136at 38.193 kb on - strand, within GFF6136at 38.195 kb on + strand, within GFF6136at 38.195 kb on + strand, within GFF6136at 38.195 kb on + strand, within GFF6136at 38.195 kb on + strand, within GFF6136at 38.195 kb on + strand, within GFF6136at 38.195 kb on + strand, within GFF6136at 38.195 kb on + strand, within GFF6136at 38.195 kb on + strand, within GFF6136at 38.196 kb on - strand, within GFF6136at 38.196 kb on - strand, within GFF6136at 38.196 kb on - strand, within GFF6136at 38.196 kb on - strand, within GFF6136at 38.196 kb on - strand, within GFF6136at 38.196 kb on - strand, within GFF6136at 38.196 kb on - strand, within GFF6136at 38.196 kb on - strand, within GFF6136at 38.198 kb on + strand, within GFF6136at 38.198 kb on + strand, within GFF6136at 38.198 kb on + strand, within GFF6136at 38.198 kb on + strand, within GFF6136at 38.199 kb on - strand, within GFF6136at 38.199 kb on - strand, within GFF6136at 38.199 kb on - strand, within GFF6136at 38.199 kb on - strand, within GFF6136at 38.201 kb on + strand, within GFF6136at 38.202 kb on - strand, within GFF6136at 38.337 kb on - strand, within GFF6136at 38.337 kb on - strand, within GFF6136at 38.337 kb on - strand, within GFF6136at 38.345 kb on + strand, within GFF6136at 38.345 kb on + strand, within GFF6136at 38.346 kb on - strand, within GFF6136at 38.346 kb on - strand, within GFF6136at 38.346 kb on - strand, within GFF6136at 38.346 kb on - strand, within GFF6136at 38.346 kb on - strand, within GFF6136at 38.346 kb on - strand, within GFF6136at 38.561 kb on + strandat 38.561 kb on + strandat 38.561 kb on + strandat 38.562 kb on - strandat 38.562 kb on - strandat 38.562 kb on - strandat 38.562 kb on - strandat 38.562 kb on - strandat 38.562 kb on - strandat 38.562 kb on - strandat 38.992 kb on + strand, within GFF6137at 38.992 kb on + strand, within GFF6137at 38.993 kb on - strand, within GFF6137at 39.046 kb on + strand, within GFF6137at 39.046 kb on + strand, within GFF6137at 39.046 kb on + strand, within GFF6137at 39.046 kb on + strand, within GFF6137at 39.046 kb on + strand, within GFF6137at 39.047 kb on - strand, within GFF6137at 39.220 kb on + strand, within GFF6137at 39.220 kb on + strand, within GFF6137at 39.220 kb on + strand, within GFF6137at 39.220 kb on + strand, within GFF6137at 39.221 kb on - strand, within GFF6137at 39.800 kb on + strand, within GFF6137at 39.800 kb on + strand, within GFF6137at 39.800 kb on + strand, within GFF6137at 39.800 kb on + strand, within GFF6137at 39.801 kb on - strand, within GFF6137at 39.801 kb on - strand, within GFF6137at 39.801 kb on - strand, within GFF6137at 39.801 kb on - strand, within GFF6137at 39.801 kb on - strand, within GFF6137at 39.801 kb on - strand, within GFF6137at 39.802 kb on + strand, within GFF6137at 39.802 kb on + strand, within GFF6137at 39.895 kb on + strand, within GFF6137at 39.895 kb on + strand, within GFF6137at 39.895 kb on + strand, within GFF6137at 39.895 kb on + strand, within GFF6137at 39.896 kb on - strand, within GFF6137at 39.896 kb on - strand, within GFF6137at 39.896 kb on - strand, within GFF6137at 39.896 kb on - strand, within GFF6137at 39.904 kb on + strand, within GFF6137at 39.904 kb on + strand, within GFF6137at 39.904 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.946 kb on + strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 39.947 kb on - strand, within GFF6137at 40.073 kb on - strand, within GFF6137at 40.254 kb on + strand, within GFF6137at 40.254 kb on + strand, within GFF6137at 40.255 kb on - strand, within GFF6137at 40.255 kb on - strand, within GFF6137at 40.255 kb on - strand, within GFF6137at 40.255 kb on - strand, within GFF6137at 40.541 kb on - strandat 40.809 kb on + strand, within GFF6138at 40.809 kb on + strand, within GFF6138at 40.868 kb on + strand, within GFF6138at 40.868 kb on + strand, within GFF6138at 40.868 kb on + strand, within GFF6138at 40.869 kb on - strand, within GFF6138at 40.869 kb on - strand, within GFF6138at 40.974 kb on + strand, within GFF6138at 40.975 kb on - strand, within GFF6138at 40.975 kb on - strand, within GFF6138at 40.975 kb on - strand, within GFF6138at 41.015 kb on + strand, within GFF6138at 41.015 kb on + strand, within GFF6138at 41.015 kb on + strand, within GFF6138at 41.016 kb on - strand, within GFF6138at 41.016 kb on - strand, within GFF6138at 41.080 kb on + strandat 41.157 kb on + strandat 41.158 kb on - strandat 41.173 kb on + strandat 41.173 kb on + strandat 41.173 kb on + strandat 41.173 kb on + strandat 41.173 kb on + strandat 41.173 kb on + strandat 41.174 kb on - strandat 41.174 kb on - strandat 41.239 kb on + strandat 41.239 kb on + strandat 41.240 kb on - strandat 41.247 kb on + strandat 41.247 kb on + strandat 41.247 kb on + strandat 41.248 kb on - strandat 41.287 kb on + strandat 41.294 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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37,790 + GFF6136 0.27 -1.7
37,791 - GFF6136 0.27 -1.3
37,791 - GFF6136 0.27 -0.1
37,793 + GFF6136 0.27 -0.5
37,793 + GFF6136 0.27 -0.1
37,793 + GFF6136 0.27 -0.7
37,793 + GFF6136 0.27 +0.0
37,793 + GFF6136 0.27 +0.0
37,793 + GFF6136 0.27 -0.1
37,793 + GFF6136 0.27 -0.1
37,794 - GFF6136 0.27 -0.6
37,794 - GFF6136 0.27 +0.6
37,794 - GFF6136 0.27 -1.0
37,794 - GFF6136 0.27 +0.5
37,794 - GFF6136 0.27 -0.4
37,794 - GFF6136 0.27 -0.6
37,880 + GFF6136 0.35 -0.4
37,881 - GFF6136 0.35 -0.9
37,922 + GFF6136 0.39 -1.1
37,922 + GFF6136 0.39 +0.0
37,922 + GFF6136 0.39 +0.0
37,922 + GFF6136 0.39 -0.3
37,923 - GFF6136 0.39 -0.1
37,923 - GFF6136 0.39 -0.6
37,923 - GFF6136 0.39 -0.2
37,923 - GFF6136 0.39 -0.0
37,977 - GFF6136 0.44 -0.8
38,103 - GFF6136 0.55 -2.5
38,103 - GFF6136 0.55 -1.8
38,103 - GFF6136 0.55 -1.5
38,103 - GFF6136 0.55 -0.4
38,103 - GFF6136 0.55 -0.5
38,192 + GFF6136 0.64 +1.0
38,192 + GFF6136 0.64 -0.4
38,192 + GFF6136 0.64 -0.5
38,192 + GFF6136 0.64 +0.8
38,193 - GFF6136 0.64 -0.5
38,193 - GFF6136 0.64 +0.5
38,195 + GFF6136 0.64 -0.6
38,195 + GFF6136 0.64 +0.1
38,195 + GFF6136 0.64 -0.7
38,195 + GFF6136 0.64 +0.5
38,195 + GFF6136 0.64 +0.4
38,195 + GFF6136 0.64 -0.5
38,195 + GFF6136 0.64 -0.3
38,195 + GFF6136 0.64 -1.0
38,196 - GFF6136 0.64 +1.0
38,196 - GFF6136 0.64 -1.1
38,196 - GFF6136 0.64 +0.6
38,196 - GFF6136 0.64 -0.8
38,196 - GFF6136 0.64 -1.6
38,196 - GFF6136 0.64 -1.0
38,196 - GFF6136 0.64 +0.2
38,196 - GFF6136 0.64 -0.3
38,198 + GFF6136 0.64 +0.2
38,198 + GFF6136 0.64 -0.3
38,198 + GFF6136 0.64 -0.2
38,198 + GFF6136 0.64 -0.8
38,199 - GFF6136 0.64 -0.3
38,199 - GFF6136 0.64 -0.4
38,199 - GFF6136 0.64 -0.6
38,199 - GFF6136 0.64 +1.6
38,201 + GFF6136 0.65 -0.5
38,202 - GFF6136 0.65 -0.9
38,337 - GFF6136 0.77 -0.2
38,337 - GFF6136 0.77 -1.5
38,337 - GFF6136 0.77 +0.2
38,345 + GFF6136 0.78 -0.8
38,345 + GFF6136 0.78 +1.1
38,346 - GFF6136 0.78 -0.7
38,346 - GFF6136 0.78 -0.6
38,346 - GFF6136 0.78 -1.0
38,346 - GFF6136 0.78 +0.3
38,346 - GFF6136 0.78 +1.1
38,346 - GFF6136 0.78 +1.6
38,561 + -0.7
38,561 + +1.6
38,561 + -0.5
38,562 - -0.6
38,562 - -0.7
38,562 - -2.6
38,562 - +0.0
38,562 - -0.1
38,562 - +0.1
38,562 - +0.0
38,992 + GFF6137 0.18 -0.3
38,992 + GFF6137 0.18 -1.4
38,993 - GFF6137 0.18 -0.2
39,046 + GFF6137 0.21 -2.5
39,046 + GFF6137 0.21 +0.3
39,046 + GFF6137 0.21 +0.3
39,046 + GFF6137 0.21 -0.2
39,046 + GFF6137 0.21 +0.5
39,047 - GFF6137 0.21 +0.2
39,220 + GFF6137 0.31 -0.2
39,220 + GFF6137 0.31 +0.1
39,220 + GFF6137 0.31 -0.2
39,220 + GFF6137 0.31 +0.4
39,221 - GFF6137 0.31 +0.2
39,800 + GFF6137 0.62 +0.6
39,800 + GFF6137 0.62 -0.6
39,800 + GFF6137 0.62 -1.5
39,800 + GFF6137 0.62 +0.3
39,801 - GFF6137 0.62 -0.6
39,801 - GFF6137 0.62 -0.3
39,801 - GFF6137 0.62 +0.2
39,801 - GFF6137 0.62 +0.6
39,801 - GFF6137 0.62 -0.2
39,801 - GFF6137 0.62 -0.0
39,802 + GFF6137 0.62 -0.4
39,802 + GFF6137 0.62 +0.1
39,895 + GFF6137 0.67 +0.0
39,895 + GFF6137 0.67 -0.7
39,895 + GFF6137 0.67 -0.5
39,895 + GFF6137 0.67 -1.0
39,896 - GFF6137 0.67 -1.1
39,896 - GFF6137 0.67 -1.0
39,896 - GFF6137 0.67 -1.6
39,896 - GFF6137 0.67 -0.7
39,904 + GFF6137 0.68 +0.2
39,904 + GFF6137 0.68 -0.3
39,904 + GFF6137 0.68 -0.7
39,946 + GFF6137 0.70 -0.7
39,946 + GFF6137 0.70 -0.3
39,946 + GFF6137 0.70 +0.0
39,946 + GFF6137 0.70 -0.7
39,946 + GFF6137 0.70 -0.7
39,946 + GFF6137 0.70 +0.8
39,946 + GFF6137 0.70 -0.5
39,946 + GFF6137 0.70 -0.2
39,946 + GFF6137 0.70 -1.0
39,946 + GFF6137 0.70 +1.3
39,946 + GFF6137 0.70 -0.3
39,947 - GFF6137 0.70 +1.0
39,947 - GFF6137 0.70 +0.1
39,947 - GFF6137 0.70 -0.3
39,947 - GFF6137 0.70 -0.1
39,947 - GFF6137 0.70 +1.0
39,947 - GFF6137 0.70 -0.2
39,947 - GFF6137 0.70 -0.3
39,947 - GFF6137 0.70 -0.2
39,947 - GFF6137 0.70 -1.1
39,947 - GFF6137 0.70 -0.9
40,073 - GFF6137 0.77 +0.9
40,254 + GFF6137 0.87 -0.1
40,254 + GFF6137 0.87 +0.2
40,255 - GFF6137 0.87 -0.9
40,255 - GFF6137 0.87 -0.3
40,255 - GFF6137 0.87 +0.6
40,255 - GFF6137 0.87 +1.3
40,541 - -0.4
40,809 + GFF6138 0.47 -0.6
40,809 + GFF6138 0.47 -0.7
40,868 + GFF6138 0.56 -0.1
40,868 + GFF6138 0.56 -0.4
40,868 + GFF6138 0.56 +0.9
40,869 - GFF6138 0.57 +0.0
40,869 - GFF6138 0.57 -0.4
40,974 + GFF6138 0.73 -2.0
40,975 - GFF6138 0.74 +0.4
40,975 - GFF6138 0.74 -0.7
40,975 - GFF6138 0.74 +0.6
41,015 + GFF6138 0.80 +1.1
41,015 + GFF6138 0.80 +0.4
41,015 + GFF6138 0.80 +0.6
41,016 - GFF6138 0.80 -1.6
41,016 - GFF6138 0.80 +0.2
41,080 + -0.2
41,157 + -0.4
41,158 - -1.5
41,173 + -1.4
41,173 + +0.0
41,173 + -0.5
41,173 + -0.0
41,173 + +0.3
41,173 + -0.2
41,174 - -0.2
41,174 - +0.6
41,239 + -0.7
41,239 + -1.0
41,240 - -0.3
41,247 + -1.0
41,247 + -0.2
41,247 + -1.1
41,248 - -0.7
41,287 + -0.9
41,294 - +0.5

Or see this region's nucleotide sequence