Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6131 and GFF6132 overlap by 4 nucleotides GFF6132 and GFF6133 overlap by 4 nucleotides GFF6133 and GFF6134 are separated by 1 nucleotides
GFF6131 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 32,714 to 33,445
GFF6131
GFF6132 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 33,442 to 34,245
GFF6132
GFF6133 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 34,242 to 35,105
GFF6133
GFF6134 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 35,107 to 35,988
GFF6134
Position (kb) 34
35
36 Strain fitness (log2 ratio) -2
-1
0
1 at 33.494 kb on + strand at 33.495 kb on - strand at 33.777 kb on - strand, within GFF6132 at 34.831 kb on + strand, within GFF6133 at 34.831 kb on + strand, within GFF6133 at 34.831 kb on + strand, within GFF6133 at 34.832 kb on - strand, within GFF6133 at 34.832 kb on - strand, within GFF6133 at 34.832 kb on - strand, within GFF6133 at 34.931 kb on - strand, within GFF6133 at 34.931 kb on - strand, within GFF6133 at 34.957 kb on + strand, within GFF6133 at 35.108 kb on + strand at 35.108 kb on + strand at 35.109 kb on - strand at 35.109 kb on - strand at 35.109 kb on - strand at 35.213 kb on + strand, within GFF6134 at 35.213 kb on + strand, within GFF6134 at 35.213 kb on + strand, within GFF6134 at 35.214 kb on - strand, within GFF6134 at 35.357 kb on + strand, within GFF6134 at 35.417 kb on + strand, within GFF6134 at 35.418 kb on - strand, within GFF6134 at 35.450 kb on + strand, within GFF6134 at 35.450 kb on + strand, within GFF6134 at 35.451 kb on - strand, within GFF6134 at 35.911 kb on + strand at 35.912 kb on - strand at 35.942 kb on + strand at 35.942 kb on + strand at 35.943 kb on - strand at 35.943 kb on - strand at 35.943 kb on - strand at 36.054 kb on + strand at 36.054 kb on + strand at 36.054 kb on + strand at 36.054 kb on + strand at 36.055 kb on - strand at 36.055 kb on - strand at 36.055 kb on - strand at 36.055 kb on - strand at 36.055 kb on - strand at 36.055 kb on - strand at 36.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 33,494 + -0.0 33,495 - -0.4 33,777 - GFF6132 0.42 +1.3 34,831 + GFF6133 0.68 +1.0 34,831 + GFF6133 0.68 +0.2 34,831 + GFF6133 0.68 +0.2 34,832 - GFF6133 0.68 +1.3 34,832 - GFF6133 0.68 -0.3 34,832 - GFF6133 0.68 -0.4 34,931 - GFF6133 0.80 -0.4 34,931 - GFF6133 0.80 +1.2 34,957 + GFF6133 0.83 +0.4 35,108 + -0.4 35,108 + -0.7 35,109 - +0.1 35,109 - -0.2 35,109 - +0.2 35,213 + GFF6134 0.12 -0.8 35,213 + GFF6134 0.12 +0.3 35,213 + GFF6134 0.12 -0.8 35,214 - GFF6134 0.12 -0.4 35,357 + GFF6134 0.28 -2.1 35,417 + GFF6134 0.35 +0.5 35,418 - GFF6134 0.35 +0.1 35,450 + GFF6134 0.39 +0.5 35,450 + GFF6134 0.39 -0.4 35,451 - GFF6134 0.39 +0.4 35,911 + -0.2 35,912 - -1.5 35,942 + -0.4 35,942 + -0.9 35,943 - -0.9 35,943 - -0.1 35,943 - +0.4 36,054 + -0.3 36,054 + -0.3 36,054 + -0.2 36,054 + -0.0 36,055 - -0.9 36,055 - -0.5 36,055 - -1.2 36,055 - -0.7 36,055 - +0.3 36,055 - -0.7 36,055 - -0.3
Or see this region's nucleotide sequence