Strain Fitness in Variovorax sp. SCN45 around GFF6102

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6101 and GFF6102 overlap by 4 nucleotidesGFF6102 and GFF6103 are separated by 114 nucleotidesGFF6103 and GFF6104 are separated by 412 nucleotides GFF6101 - Ser/Thr protein phosphatase family protein, at 860 to 1,900 GFF6101 GFF6102 - hypothetical protein, at 1,897 to 3,288 GFF6102 GFF6103 - no description, at 3,403 to 3,570 GFF6103 GFF6104 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 3,983 to 4,873 GFF6104 Position (kb) 1 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1.162 kb on + strand, within GFF6101at 1.162 kb on + strand, within GFF6101at 1.163 kb on - strand, within GFF6101at 1.173 kb on + strand, within GFF6101at 1.279 kb on - strand, within GFF6101at 1.389 kb on - strand, within GFF6101at 1.491 kb on + strand, within GFF6101at 1.491 kb on + strand, within GFF6101at 1.833 kb on + strandat 1.834 kb on - strandat 1.857 kb on - strandat 1.884 kb on + strandat 2.183 kb on + strand, within GFF6102at 2.183 kb on + strand, within GFF6102at 2.183 kb on + strand, within GFF6102at 2.183 kb on + strand, within GFF6102at 2.184 kb on - strand, within GFF6102at 2.184 kb on - strand, within GFF6102at 2.184 kb on - strand, within GFF6102at 2.184 kb on - strand, within GFF6102at 2.187 kb on + strand, within GFF6102at 2.187 kb on + strand, within GFF6102at 2.187 kb on + strand, within GFF6102at 2.187 kb on + strand, within GFF6102at 2.188 kb on - strand, within GFF6102at 2.188 kb on - strand, within GFF6102at 2.188 kb on - strand, within GFF6102at 2.300 kb on + strand, within GFF6102at 2.300 kb on + strand, within GFF6102at 2.300 kb on + strand, within GFF6102at 2.300 kb on + strand, within GFF6102at 2.301 kb on - strand, within GFF6102at 2.301 kb on - strand, within GFF6102at 2.301 kb on - strand, within GFF6102at 2.309 kb on + strand, within GFF6102at 2.309 kb on + strand, within GFF6102at 2.309 kb on + strand, within GFF6102at 2.309 kb on + strand, within GFF6102at 2.309 kb on + strand, within GFF6102at 2.310 kb on - strand, within GFF6102at 2.310 kb on - strand, within GFF6102at 2.310 kb on - strand, within GFF6102at 2.403 kb on - strand, within GFF6102at 2.820 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.992 kb on + strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 2.993 kb on - strand, within GFF6102at 3.006 kb on + strand, within GFF6102at 3.079 kb on - strand, within GFF6102at 3.212 kb on + strandat 3.212 kb on + strandat 3.213 kb on - strandat 3.213 kb on - strandat 3.253 kb on - strandat 3.253 kb on - strandat 3.367 kb on + strandat 3.368 kb on - strandat 3.368 kb on - strandat 3.368 kb on - strandat 3.412 kb on + strandat 3.413 kb on - strandat 3.413 kb on - strandat 3.439 kb on + strand, within GFF6103at 3.439 kb on + strand, within GFF6103at 3.440 kb on - strand, within GFF6103at 3.445 kb on + strand, within GFF6103at 3.445 kb on + strand, within GFF6103at 3.445 kb on + strand, within GFF6103at 3.446 kb on - strand, within GFF6103at 3.446 kb on - strand, within GFF6103at 3.446 kb on - strand, within GFF6103at 3.552 kb on - strand, within GFF6103at 3.552 kb on - strand, within GFF6103at 3.552 kb on - strand, within GFF6103at 3.552 kb on - strand, within GFF6103at 3.593 kb on - strandat 3.611 kb on + strandat 3.630 kb on - strandat 3.638 kb on + strandat 3.648 kb on + strandat 3.679 kb on + strandat 3.680 kb on - strandat 3.680 kb on - strandat 3.680 kb on - strandat 3.680 kb on - strandat 3.755 kb on + strandat 3.765 kb on + strandat 3.765 kb on + strandat 3.765 kb on + strandat 3.766 kb on - strandat 3.784 kb on + strandat 3.784 kb on + strandat 3.784 kb on + strandat 3.784 kb on + strandat 3.784 kb on + strandat 3.784 kb on + strandat 3.784 kb on + strandat 3.784 kb on + strandat 3.784 kb on + strandat 3.785 kb on - strandat 3.785 kb on - strandat 3.785 kb on - strandat 3.785 kb on - strandat 3.785 kb on - strandat 3.785 kb on - strandat 3.785 kb on - strandat 3.785 kb on - strandat 3.788 kb on + strandat 3.788 kb on + strandat 3.789 kb on - strandat 3.789 kb on - strandat 3.795 kb on + strandat 3.795 kb on + strandat 3.796 kb on - strandat 3.845 kb on - strandat 3.919 kb on + strandat 3.942 kb on + strandat 3.942 kb on + strandat 3.942 kb on + strandat 3.942 kb on + strandat 3.943 kb on - strandat 3.943 kb on - strandat 3.996 kb on + strandat 3.996 kb on + strandat 3.997 kb on - strandat 3.997 kb on - strandat 3.997 kb on - strandat 3.997 kb on - strandat 4.127 kb on + strand, within GFF6104at 4.128 kb on - strand, within GFF6104

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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1,162 + GFF6101 0.29 +0.6
1,162 + GFF6101 0.29 +0.6
1,163 - GFF6101 0.29 -0.5
1,173 + GFF6101 0.30 +0.1
1,279 - GFF6101 0.40 -0.2
1,389 - GFF6101 0.51 -0.1
1,491 + GFF6101 0.61 +0.0
1,491 + GFF6101 0.61 -0.6
1,833 + +1.2
1,834 - -0.5
1,857 - -0.9
1,884 + -0.8
2,183 + GFF6102 0.21 -0.2
2,183 + GFF6102 0.21 +4.0
2,183 + GFF6102 0.21 +0.9
2,183 + GFF6102 0.21 -0.0
2,184 - GFF6102 0.21 -1.6
2,184 - GFF6102 0.21 +1.1
2,184 - GFF6102 0.21 +0.1
2,184 - GFF6102 0.21 -0.7
2,187 + GFF6102 0.21 -0.6
2,187 + GFF6102 0.21 -0.3
2,187 + GFF6102 0.21 -0.1
2,187 + GFF6102 0.21 +0.6
2,188 - GFF6102 0.21 +0.3
2,188 - GFF6102 0.21 +0.4
2,188 - GFF6102 0.21 +0.5
2,300 + GFF6102 0.29 -0.3
2,300 + GFF6102 0.29 +1.3
2,300 + GFF6102 0.29 +0.0
2,300 + GFF6102 0.29 -2.3
2,301 - GFF6102 0.29 -0.2
2,301 - GFF6102 0.29 -1.0
2,301 - GFF6102 0.29 -0.4
2,309 + GFF6102 0.30 -0.0
2,309 + GFF6102 0.30 -0.4
2,309 + GFF6102 0.30 +0.5
2,309 + GFF6102 0.30 -0.7
2,309 + GFF6102 0.30 +0.4
2,310 - GFF6102 0.30 +1.0
2,310 - GFF6102 0.30 -0.0
2,310 - GFF6102 0.30 -0.5
2,403 - GFF6102 0.36 -1.6
2,820 + GFF6102 0.66 +0.2
2,992 + GFF6102 0.79 -0.3
2,992 + GFF6102 0.79 +0.0
2,992 + GFF6102 0.79 -0.6
2,992 + GFF6102 0.79 +0.1
2,992 + GFF6102 0.79 +0.0
2,992 + GFF6102 0.79 +0.1
2,992 + GFF6102 0.79 +0.8
2,992 + GFF6102 0.79 +0.1
2,992 + GFF6102 0.79 -1.3
2,992 + GFF6102 0.79 -0.3
2,992 + GFF6102 0.79 +0.5
2,992 + GFF6102 0.79 -0.3
2,992 + GFF6102 0.79 +0.5
2,992 + GFF6102 0.79 -0.5
2,992 + GFF6102 0.79 -0.3
2,992 + GFF6102 0.79 -0.6
2,992 + GFF6102 0.79 -0.2
2,992 + GFF6102 0.79 +0.1
2,993 - GFF6102 0.79 +0.3
2,993 - GFF6102 0.79 -1.6
2,993 - GFF6102 0.79 -2.4
2,993 - GFF6102 0.79 +0.1
2,993 - GFF6102 0.79 -0.5
2,993 - GFF6102 0.79 +0.3
2,993 - GFF6102 0.79 -0.1
2,993 - GFF6102 0.79 +0.4
2,993 - GFF6102 0.79 -0.8
2,993 - GFF6102 0.79 -0.8
2,993 - GFF6102 0.79 -0.3
2,993 - GFF6102 0.79 +0.0
2,993 - GFF6102 0.79 -1.0
2,993 - GFF6102 0.79 -0.6
2,993 - GFF6102 0.79 +0.6
2,993 - GFF6102 0.79 +0.1
2,993 - GFF6102 0.79 +0.0
2,993 - GFF6102 0.79 +0.4
2,993 - GFF6102 0.79 -1.0
3,006 + GFF6102 0.80 -0.9
3,079 - GFF6102 0.85 -0.7
3,212 + -0.7
3,212 + +1.5
3,213 - +0.4
3,213 - +0.8
3,253 - +0.4
3,253 - -1.8
3,367 + -0.3
3,368 - +0.1
3,368 - -1.1
3,368 - +0.2
3,412 + +0.1
3,413 - +0.0
3,413 - -0.5
3,439 + GFF6103 0.21 -0.4
3,439 + GFF6103 0.21 +0.6
3,440 - GFF6103 0.22 -0.6
3,445 + GFF6103 0.25 -0.4
3,445 + GFF6103 0.25 -0.2
3,445 + GFF6103 0.25 +0.1
3,446 - GFF6103 0.26 -0.9
3,446 - GFF6103 0.26 -0.6
3,446 - GFF6103 0.26 +1.0
3,552 - GFF6103 0.89 +0.8
3,552 - GFF6103 0.89 -0.8
3,552 - GFF6103 0.89 -0.4
3,552 - GFF6103 0.89 +0.3
3,593 - -0.5
3,611 + +0.1
3,630 - -0.4
3,638 + -0.1
3,648 + +0.0
3,679 + -0.1
3,680 - +0.1
3,680 - +0.5
3,680 - +0.1
3,680 - +0.5
3,755 + -1.1
3,765 + -1.4
3,765 + +0.7
3,765 + +0.4
3,766 - -1.3
3,784 + +0.0
3,784 + +1.9
3,784 + +1.3
3,784 + +0.5
3,784 + +1.0
3,784 + +0.7
3,784 + +0.0
3,784 + +0.3
3,784 + -0.3
3,785 - +0.1
3,785 - -0.1
3,785 - -0.8
3,785 - -0.9
3,785 - -0.2
3,785 - -0.2
3,785 - -0.7
3,785 - -0.3
3,788 + +0.2
3,788 + -1.2
3,789 - -0.6
3,789 - +0.7
3,795 + -1.5
3,795 + -0.5
3,796 - +0.0
3,845 - +0.3
3,919 + -0.6
3,942 + -0.3
3,942 + -0.3
3,942 + -0.5
3,942 + -3.0
3,943 - +0.1
3,943 - +0.6
3,996 + -0.4
3,996 + +0.8
3,997 - -0.4
3,997 - -0.2
3,997 - -0.0
3,997 - -0.6
4,127 + GFF6104 0.16 -0.9
4,128 - GFF6104 0.16 +1.7

Or see this region's nucleotide sequence