Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6092 and GFF6093 are separated by 44 nucleotides GFF6093 and GFF6094 overlap by 4 nucleotides GFF6094 and GFF6095 are separated by 14 nucleotides
GFF6092 - Penicillin G acylase precursor (EC 3.5.1.11), at 152,738 to 155,182
GFF6092
GFF6093 - 1,2-phenylacetyl-CoA epoxidase, subunit A (EC 1.14.13.149), at 155,227 to 156,237
GFF6093
GFF6094 - 1,2-phenylacetyl-CoA epoxidase, subunit B (EC 1.14.13.149), at 156,234 to 156,530
GFF6094
GFF6095 - 1,2-phenylacetyl-CoA epoxidase, subunit C (EC 1.14.13.149), at 156,545 to 157,324
GFF6095
Position (kb) 155
156
157 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 154.248 kb on - strand, within GFF6092 at 154.248 kb on - strand, within GFF6092 at 154.304 kb on + strand, within GFF6092 at 154.304 kb on + strand, within GFF6092 at 154.305 kb on - strand, within GFF6092 at 154.305 kb on - strand, within GFF6092 at 154.404 kb on - strand, within GFF6092 at 154.404 kb on - strand, within GFF6092 at 154.404 kb on - strand, within GFF6092 at 154.424 kb on + strand, within GFF6092 at 154.424 kb on + strand, within GFF6092 at 154.425 kb on - strand, within GFF6092 at 154.425 kb on - strand, within GFF6092 at 154.425 kb on - strand, within GFF6092 at 154.547 kb on + strand, within GFF6092 at 154.547 kb on + strand, within GFF6092 at 154.548 kb on - strand, within GFF6092 at 154.548 kb on - strand, within GFF6092 at 154.595 kb on + strand, within GFF6092 at 154.644 kb on - strand, within GFF6092 at 154.659 kb on - strand, within GFF6092 at 154.659 kb on - strand, within GFF6092 at 154.715 kb on + strand, within GFF6092 at 154.716 kb on - strand, within GFF6092 at 154.716 kb on - strand, within GFF6092 at 154.716 kb on - strand, within GFF6092 at 155.075 kb on + strand at 155.075 kb on + strand at 155.076 kb on - strand at 155.076 kb on - strand at 155.076 kb on - strand at 155.166 kb on + strand at 155.166 kb on + strand at 155.166 kb on + strand at 155.166 kb on + strand at 155.167 kb on - strand at 155.167 kb on - strand at 155.167 kb on - strand at 155.177 kb on + strand at 155.178 kb on - strand at 155.231 kb on - strand at 155.536 kb on + strand, within GFF6093 at 155.536 kb on + strand, within GFF6093 at 155.536 kb on + strand, within GFF6093 at 155.536 kb on + strand, within GFF6093 at 155.537 kb on - strand, within GFF6093 at 155.542 kb on + strand, within GFF6093 at 155.542 kb on + strand, within GFF6093 at 155.614 kb on + strand, within GFF6093 at 155.615 kb on - strand, within GFF6093 at 155.615 kb on - strand, within GFF6093 at 155.725 kb on + strand, within GFF6093 at 156.369 kb on + strand, within GFF6094 at 156.369 kb on + strand, within GFF6094 at 156.370 kb on - strand, within GFF6094 at 156.481 kb on - strand, within GFF6094 at 156.499 kb on - strand, within GFF6094 at 156.499 kb on - strand, within GFF6094 at 156.587 kb on + strand at 156.588 kb on - strand at 156.806 kb on + strand, within GFF6095 at 156.807 kb on - strand, within GFF6095 at 157.070 kb on + strand, within GFF6095 at 157.070 kb on + strand, within GFF6095 at 157.071 kb on - strand, within GFF6095 at 157.071 kb on - strand, within GFF6095 at 157.071 kb on - strand, within GFF6095 at 157.071 kb on - strand, within GFF6095
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 154,248 - GFF6092 0.62 +0.8 154,248 - GFF6092 0.62 +0.6 154,304 + GFF6092 0.64 -0.1 154,304 + GFF6092 0.64 +0.0 154,305 - GFF6092 0.64 +0.8 154,305 - GFF6092 0.64 +0.1 154,404 - GFF6092 0.68 -0.3 154,404 - GFF6092 0.68 +0.8 154,404 - GFF6092 0.68 +0.3 154,424 + GFF6092 0.69 -0.2 154,424 + GFF6092 0.69 -0.6 154,425 - GFF6092 0.69 +0.4 154,425 - GFF6092 0.69 +1.2 154,425 - GFF6092 0.69 +0.2 154,547 + GFF6092 0.74 +0.8 154,547 + GFF6092 0.74 -1.5 154,548 - GFF6092 0.74 +3.4 154,548 - GFF6092 0.74 -0.0 154,595 + GFF6092 0.76 -0.0 154,644 - GFF6092 0.78 +2.4 154,659 - GFF6092 0.79 -0.1 154,659 - GFF6092 0.79 -0.8 154,715 + GFF6092 0.81 -0.2 154,716 - GFF6092 0.81 +0.8 154,716 - GFF6092 0.81 -1.7 154,716 - GFF6092 0.81 +1.1 155,075 + -0.7 155,075 + +0.9 155,076 - -1.0 155,076 - +0.4 155,076 - -0.2 155,166 + +1.0 155,166 + -0.3 155,166 + -1.1 155,166 + -0.8 155,167 - +0.2 155,167 - +0.5 155,167 - +0.6 155,177 + +0.1 155,178 - -0.1 155,231 - -0.2 155,536 + GFF6093 0.31 -1.9 155,536 + GFF6093 0.31 +0.2 155,536 + GFF6093 0.31 +0.2 155,536 + GFF6093 0.31 -0.3 155,537 - GFF6093 0.31 +0.4 155,542 + GFF6093 0.31 -0.2 155,542 + GFF6093 0.31 -0.2 155,614 + GFF6093 0.38 -0.8 155,615 - GFF6093 0.38 +0.0 155,615 - GFF6093 0.38 -1.3 155,725 + GFF6093 0.49 -0.6 156,369 + GFF6094 0.45 -0.2 156,369 + GFF6094 0.45 -0.2 156,370 - GFF6094 0.46 +2.0 156,481 - GFF6094 0.83 +1.0 156,499 - GFF6094 0.89 +0.1 156,499 - GFF6094 0.89 -0.5 156,587 + -1.5 156,588 - +0.1 156,806 + GFF6095 0.33 +1.3 156,807 - GFF6095 0.34 +1.5 157,070 + GFF6095 0.67 +0.8 157,070 + GFF6095 0.67 +0.5 157,071 - GFF6095 0.67 -0.0 157,071 - GFF6095 0.67 -0.2 157,071 - GFF6095 0.67 -1.5 157,071 - GFF6095 0.67 -0.6
Or see this region's nucleotide sequence