Strain Fitness in Variovorax sp. SCN45 around GFF6067

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6066 and GFF6067 are separated by 102 nucleotidesGFF6067 and GFF6068 are separated by 15 nucleotidesGFF6068 and GFF6069 are separated by 32 nucleotides GFF6066 - Quinone oxidoreductase (EC 1.6.5.5), at 127,722 to 128,708 GFF6066 GFF6067 - Permease of the drug/metabolite transporter (DMT) superfamily, at 128,811 to 129,719 GFF6067 GFF6068 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 129,735 to 130,526 GFF6068 GFF6069 - Permease of the drug/metabolite transporter (DMT) superfamily, at 130,559 to 131,515 GFF6069 Position (kb) 128 129 130Strain fitness (log2 ratio) -2 -1 0 1 2at 127.921 kb on + strand, within GFF6066at 127.921 kb on + strand, within GFF6066at 127.921 kb on + strand, within GFF6066at 127.922 kb on - strand, within GFF6066at 127.922 kb on - strand, within GFF6066at 127.922 kb on - strand, within GFF6066at 127.922 kb on - strand, within GFF6066at 128.059 kb on + strand, within GFF6066at 128.059 kb on + strand, within GFF6066at 128.059 kb on + strand, within GFF6066at 128.059 kb on + strand, within GFF6066at 128.059 kb on + strand, within GFF6066at 128.060 kb on - strand, within GFF6066at 128.060 kb on - strand, within GFF6066at 128.125 kb on + strand, within GFF6066at 128.125 kb on + strand, within GFF6066at 128.126 kb on - strand, within GFF6066at 128.126 kb on - strand, within GFF6066at 128.126 kb on - strand, within GFF6066at 128.126 kb on - strand, within GFF6066at 128.126 kb on - strand, within GFF6066at 128.320 kb on + strand, within GFF6066at 128.320 kb on + strand, within GFF6066at 128.320 kb on + strand, within GFF6066at 128.321 kb on - strand, within GFF6066at 128.321 kb on - strand, within GFF6066at 128.321 kb on - strand, within GFF6066at 128.321 kb on - strand, within GFF6066at 128.425 kb on + strand, within GFF6066at 128.552 kb on - strand, within GFF6066at 128.552 kb on - strand, within GFF6066at 128.552 kb on - strand, within GFF6066at 128.552 kb on - strand, within GFF6066at 128.569 kb on + strand, within GFF6066at 128.570 kb on - strand, within GFF6066at 128.570 kb on - strand, within GFF6066at 128.570 kb on - strand, within GFF6066at 128.688 kb on - strandat 128.798 kb on - strandat 129.033 kb on + strand, within GFF6067at 129.033 kb on + strand, within GFF6067at 129.066 kb on + strand, within GFF6067at 129.066 kb on + strand, within GFF6067at 129.066 kb on + strand, within GFF6067at 129.067 kb on - strand, within GFF6067at 129.067 kb on - strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.330 kb on + strand, within GFF6067at 129.330 kb on + strand, within GFF6067at 129.330 kb on + strand, within GFF6067at 129.330 kb on + strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.538 kb on - strand, within GFF6067at 129.538 kb on - strand, within GFF6067at 129.660 kb on + strandat 129.660 kb on + strandat 129.660 kb on + strandat 129.739 kb on + strandat 129.739 kb on + strandat 129.739 kb on + strandat 129.739 kb on + strandat 129.739 kb on + strandat 129.740 kb on - strandat 129.740 kb on - strandat 129.740 kb on - strandat 129.790 kb on + strandat 129.790 kb on + strandat 129.790 kb on + strandat 129.791 kb on - strandat 129.791 kb on - strandat 130.465 kb on + strandat 130.514 kb on + strandat 130.514 kb on + strandat 130.515 kb on - strandat 130.646 kb on + strandat 130.647 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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127,921 + GFF6066 0.20 +0.8
127,921 + GFF6066 0.20 +0.6
127,921 + GFF6066 0.20 -0.1
127,922 - GFF6066 0.20 -0.5
127,922 - GFF6066 0.20 -0.4
127,922 - GFF6066 0.20 -0.2
127,922 - GFF6066 0.20 -1.5
128,059 + GFF6066 0.34 -1.1
128,059 + GFF6066 0.34 +0.7
128,059 + GFF6066 0.34 -0.3
128,059 + GFF6066 0.34 -0.6
128,059 + GFF6066 0.34 -0.2
128,060 - GFF6066 0.34 -1.4
128,060 - GFF6066 0.34 +0.5
128,125 + GFF6066 0.41 -0.1
128,125 + GFF6066 0.41 -0.9
128,126 - GFF6066 0.41 +0.0
128,126 - GFF6066 0.41 -2.2
128,126 - GFF6066 0.41 +0.2
128,126 - GFF6066 0.41 -0.9
128,126 - GFF6066 0.41 -0.2
128,320 + GFF6066 0.61 -0.2
128,320 + GFF6066 0.61 +0.4
128,320 + GFF6066 0.61 +0.5
128,321 - GFF6066 0.61 -0.8
128,321 - GFF6066 0.61 -0.7
128,321 - GFF6066 0.61 -0.3
128,321 - GFF6066 0.61 -1.4
128,425 + GFF6066 0.71 +0.2
128,552 - GFF6066 0.84 +0.2
128,552 - GFF6066 0.84 -0.2
128,552 - GFF6066 0.84 -0.6
128,552 - GFF6066 0.84 -0.5
128,569 + GFF6066 0.86 -0.1
128,570 - GFF6066 0.86 +0.2
128,570 - GFF6066 0.86 +0.2
128,570 - GFF6066 0.86 -0.3
128,688 - -0.5
128,798 - +0.0
129,033 + GFF6067 0.24 -1.4
129,033 + GFF6067 0.24 +0.3
129,066 + GFF6067 0.28 -0.6
129,066 + GFF6067 0.28 -0.5
129,066 + GFF6067 0.28 -0.5
129,067 - GFF6067 0.28 -0.7
129,067 - GFF6067 0.28 -1.4
129,297 + GFF6067 0.53 +0.5
129,297 + GFF6067 0.53 -0.4
129,297 + GFF6067 0.53 +0.5
129,297 + GFF6067 0.53 -0.8
129,297 + GFF6067 0.53 +0.0
129,297 + GFF6067 0.53 +0.2
129,298 - GFF6067 0.54 -0.7
129,298 - GFF6067 0.54 -0.3
129,298 - GFF6067 0.54 -0.5
129,298 - GFF6067 0.54 -0.5
129,298 - GFF6067 0.54 -0.7
129,298 - GFF6067 0.54 +0.5
129,298 - GFF6067 0.54 -0.2
129,298 - GFF6067 0.54 -1.1
129,298 - GFF6067 0.54 +0.0
129,298 - GFF6067 0.54 -0.8
129,330 + GFF6067 0.57 -1.2
129,330 + GFF6067 0.57 -0.6
129,330 + GFF6067 0.57 -0.3
129,330 + GFF6067 0.57 -0.4
129,331 - GFF6067 0.57 -1.2
129,331 - GFF6067 0.57 -0.7
129,331 - GFF6067 0.57 -0.0
129,331 - GFF6067 0.57 -0.9
129,331 - GFF6067 0.57 -0.5
129,331 - GFF6067 0.57 -0.8
129,331 - GFF6067 0.57 -0.4
129,331 - GFF6067 0.57 -1.3
129,538 - GFF6067 0.80 -0.6
129,538 - GFF6067 0.80 -1.0
129,660 + -0.3
129,660 + -0.9
129,660 + -0.3
129,739 + +1.2
129,739 + -2.0
129,739 + -1.3
129,739 + -0.3
129,739 + -0.6
129,740 - -0.5
129,740 - -0.4
129,740 - -0.5
129,790 + -1.8
129,790 + +0.1
129,790 + -1.3
129,791 - +1.8
129,791 - -0.6
130,465 + -0.3
130,514 + -1.8
130,514 + +0.2
130,515 - +0.6
130,646 + -0.4
130,647 - -0.3

Or see this region's nucleotide sequence