Strain Fitness in Variovorax sp. SCN45 around GFF606

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF604 and GFF605 are separated by 28 nucleotidesGFF605 and GFF606 are separated by 34 nucleotidesGFF606 and GFF607 are separated by 7 nucleotides GFF604 - Tricarballylate utilization protein, TcuB, at 649,399 to 650,619 GFF604 GFF605 - Aldolase related to tricarballylate utilization, at 650,648 to 651,436 GFF605 GFF606 - BUG/TctC family periplasmic protein, at 651,471 to 652,454 GFF606 GFF607 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 652,462 to 653,445 GFF607 Position (kb) 651 652 653Strain fitness (log2 ratio) -2 -1 0 1 2at 650.664 kb on + strandat 650.664 kb on + strandat 650.800 kb on - strand, within GFF605at 650.846 kb on + strand, within GFF605at 650.846 kb on + strand, within GFF605at 650.846 kb on + strand, within GFF605at 650.846 kb on + strand, within GFF605at 650.847 kb on - strand, within GFF605at 650.847 kb on - strand, within GFF605at 650.847 kb on - strand, within GFF605at 650.847 kb on - strand, within GFF605at 650.931 kb on - strand, within GFF605at 650.951 kb on + strand, within GFF605at 651.099 kb on - strand, within GFF605at 651.107 kb on + strand, within GFF605at 651.107 kb on + strand, within GFF605at 651.344 kb on + strand, within GFF605at 651.344 kb on + strand, within GFF605at 651.345 kb on - strand, within GFF605at 651.345 kb on - strand, within GFF605at 651.345 kb on - strand, within GFF605at 651.345 kb on - strand, within GFF605at 651.345 kb on - strand, within GFF605at 651.405 kb on + strandat 651.406 kb on - strandat 651.750 kb on + strand, within GFF606at 651.801 kb on + strand, within GFF606at 651.801 kb on + strand, within GFF606at 651.801 kb on + strand, within GFF606at 651.802 kb on - strand, within GFF606at 651.802 kb on - strand, within GFF606at 651.816 kb on + strand, within GFF606at 651.816 kb on + strand, within GFF606at 651.817 kb on - strand, within GFF606at 651.892 kb on + strand, within GFF606at 651.893 kb on - strand, within GFF606at 651.893 kb on - strand, within GFF606at 651.924 kb on + strand, within GFF606at 651.955 kb on - strand, within GFF606at 651.955 kb on - strand, within GFF606at 651.996 kb on + strand, within GFF606at 651.996 kb on + strand, within GFF606at 651.996 kb on + strand, within GFF606at 651.996 kb on + strand, within GFF606at 651.996 kb on + strand, within GFF606at 651.996 kb on + strand, within GFF606at 651.997 kb on - strand, within GFF606at 651.997 kb on - strand, within GFF606at 651.997 kb on - strand, within GFF606at 652.041 kb on + strand, within GFF606at 652.041 kb on + strand, within GFF606at 652.041 kb on + strand, within GFF606at 652.042 kb on - strand, within GFF606at 652.042 kb on - strand, within GFF606at 652.042 kb on - strand, within GFF606at 652.309 kb on - strand, within GFF606at 652.316 kb on - strand, within GFF606at 652.316 kb on - strand, within GFF606at 652.404 kb on + strandat 652.404 kb on + strandat 652.404 kb on + strandat 652.404 kb on + strandat 652.732 kb on + strand, within GFF607at 652.733 kb on - strand, within GFF607at 652.733 kb on - strand, within GFF607at 652.733 kb on - strand, within GFF607at 652.733 kb on - strand, within GFF607at 652.797 kb on - strand, within GFF607at 653.056 kb on + strand, within GFF607at 653.056 kb on + strand, within GFF607at 653.056 kb on + strand, within GFF607at 653.057 kb on - strand, within GFF607at 653.260 kb on + strand, within GFF607

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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650,664 + +0.4
650,664 + -1.0
650,800 - GFF605 0.19 -1.3
650,846 + GFF605 0.25 +0.6
650,846 + GFF605 0.25 -0.1
650,846 + GFF605 0.25 +0.1
650,846 + GFF605 0.25 -0.5
650,847 - GFF605 0.25 -1.2
650,847 - GFF605 0.25 +2.5
650,847 - GFF605 0.25 +0.0
650,847 - GFF605 0.25 +0.1
650,931 - GFF605 0.36 -1.1
650,951 + GFF605 0.38 -0.2
651,099 - GFF605 0.57 -0.1
651,107 + GFF605 0.58 +1.1
651,107 + GFF605 0.58 +0.9
651,344 + GFF605 0.88 +0.0
651,344 + GFF605 0.88 -0.1
651,345 - GFF605 0.88 -0.7
651,345 - GFF605 0.88 -1.2
651,345 - GFF605 0.88 +0.4
651,345 - GFF605 0.88 -0.1
651,345 - GFF605 0.88 -0.8
651,405 + +0.2
651,406 - -0.8
651,750 + GFF606 0.28 +0.4
651,801 + GFF606 0.34 +0.1
651,801 + GFF606 0.34 -0.6
651,801 + GFF606 0.34 -0.4
651,802 - GFF606 0.34 -0.8
651,802 - GFF606 0.34 -0.6
651,816 + GFF606 0.35 -1.3
651,816 + GFF606 0.35 +0.4
651,817 - GFF606 0.35 +1.3
651,892 + GFF606 0.43 +0.5
651,893 - GFF606 0.43 -0.2
651,893 - GFF606 0.43 +0.3
651,924 + GFF606 0.46 -1.2
651,955 - GFF606 0.49 +0.2
651,955 - GFF606 0.49 -0.4
651,996 + GFF606 0.53 -0.3
651,996 + GFF606 0.53 +0.1
651,996 + GFF606 0.53 +0.8
651,996 + GFF606 0.53 +0.2
651,996 + GFF606 0.53 +2.4
651,996 + GFF606 0.53 +1.2
651,997 - GFF606 0.53 -0.6
651,997 - GFF606 0.53 -0.3
651,997 - GFF606 0.53 +0.0
652,041 + GFF606 0.58 +1.1
652,041 + GFF606 0.58 -0.5
652,041 + GFF606 0.58 +1.2
652,042 - GFF606 0.58 +1.3
652,042 - GFF606 0.58 -0.3
652,042 - GFF606 0.58 -0.2
652,309 - GFF606 0.85 -0.4
652,316 - GFF606 0.86 -1.0
652,316 - GFF606 0.86 +0.6
652,404 + -0.2
652,404 + -0.4
652,404 + +1.5
652,404 + -1.0
652,732 + GFF607 0.27 +0.8
652,733 - GFF607 0.28 +0.5
652,733 - GFF607 0.28 -0.1
652,733 - GFF607 0.28 +0.7
652,733 - GFF607 0.28 -1.1
652,797 - GFF607 0.34 +0.0
653,056 + GFF607 0.60 +2.2
653,056 + GFF607 0.60 -1.4
653,056 + GFF607 0.60 +0.2
653,057 - GFF607 0.60 +1.0
653,260 + GFF607 0.81 -1.9

Or see this region's nucleotide sequence