Strain Fitness in Variovorax sp. SCN45 around GFF6057

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6056 and GFF6057 are separated by 43 nucleotidesGFF6057 and GFF6058 are separated by 15 nucleotidesGFF6058 and GFF6059 are separated by 18 nucleotides GFF6056 - Transcriptional regulator, LacI family, at 117,813 to 118,832 GFF6056 GFF6057 - ABC-type Fe3+ transport system, periplasmic component, at 118,876 to 119,886 GFF6057 GFF6058 - ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron), at 119,902 to 120,732 GFF6058 GFF6059 - ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron), at 120,751 to 121,554 GFF6059 Position (kb) 118 119 120Strain fitness (log2 ratio) -2 -1 0 1 2at 117.942 kb on + strand, within GFF6056at 117.942 kb on + strand, within GFF6056at 117.942 kb on + strand, within GFF6056at 117.942 kb on + strand, within GFF6056at 117.943 kb on - strand, within GFF6056at 117.943 kb on - strand, within GFF6056at 117.943 kb on - strand, within GFF6056at 117.943 kb on - strand, within GFF6056at 117.943 kb on - strand, within GFF6056at 117.943 kb on - strand, within GFF6056at 117.943 kb on - strand, within GFF6056at 118.105 kb on - strand, within GFF6056at 118.233 kb on + strand, within GFF6056at 118.233 kb on + strand, within GFF6056at 118.233 kb on + strand, within GFF6056at 118.233 kb on + strand, within GFF6056at 118.233 kb on + strand, within GFF6056at 118.234 kb on - strand, within GFF6056at 118.234 kb on - strand, within GFF6056at 118.234 kb on - strand, within GFF6056at 118.234 kb on - strand, within GFF6056at 118.234 kb on - strand, within GFF6056at 118.245 kb on + strand, within GFF6056at 118.245 kb on + strand, within GFF6056at 118.245 kb on + strand, within GFF6056at 118.245 kb on + strand, within GFF6056at 118.245 kb on + strand, within GFF6056at 118.246 kb on - strand, within GFF6056at 118.246 kb on - strand, within GFF6056at 118.246 kb on - strand, within GFF6056at 118.246 kb on - strand, within GFF6056at 118.827 kb on + strandat 118.827 kb on + strandat 118.828 kb on - strandat 118.828 kb on - strandat 118.828 kb on - strandat 118.828 kb on - strandat 118.828 kb on - strandat 118.967 kb on - strandat 119.119 kb on + strand, within GFF6057at 119.119 kb on + strand, within GFF6057at 119.120 kb on - strand, within GFF6057at 119.120 kb on - strand, within GFF6057at 119.120 kb on - strand, within GFF6057at 119.173 kb on + strand, within GFF6057at 119.173 kb on + strand, within GFF6057at 119.174 kb on - strand, within GFF6057at 119.174 kb on - strand, within GFF6057at 119.332 kb on + strand, within GFF6057at 119.332 kb on + strand, within GFF6057at 119.332 kb on + strand, within GFF6057at 119.333 kb on - strand, within GFF6057at 119.333 kb on - strand, within GFF6057at 119.333 kb on - strand, within GFF6057at 119.381 kb on - strand, within GFF6057at 119.449 kb on + strand, within GFF6057at 119.449 kb on + strand, within GFF6057at 119.500 kb on + strand, within GFF6057at 119.500 kb on + strand, within GFF6057at 119.500 kb on + strand, within GFF6057at 119.501 kb on - strand, within GFF6057at 119.501 kb on - strand, within GFF6057at 119.569 kb on + strand, within GFF6057at 119.569 kb on + strand, within GFF6057at 119.569 kb on + strand, within GFF6057at 119.569 kb on + strand, within GFF6057at 119.570 kb on - strand, within GFF6057at 119.629 kb on + strand, within GFF6057at 119.629 kb on + strand, within GFF6057at 119.630 kb on - strand, within GFF6057at 119.731 kb on + strand, within GFF6057at 119.731 kb on + strand, within GFF6057at 119.732 kb on - strand, within GFF6057at 119.732 kb on - strand, within GFF6057at 119.824 kb on + strandat 119.866 kb on + strandat 119.866 kb on + strandat 119.867 kb on - strandat 120.050 kb on - strand, within GFF6058at 120.050 kb on - strand, within GFF6058at 120.050 kb on - strand, within GFF6058at 120.076 kb on + strand, within GFF6058at 120.160 kb on + strand, within GFF6058at 120.160 kb on + strand, within GFF6058at 120.161 kb on - strand, within GFF6058at 120.161 kb on - strand, within GFF6058at 120.161 kb on - strand, within GFF6058at 120.332 kb on - strand, within GFF6058at 120.358 kb on + strand, within GFF6058at 120.359 kb on - strand, within GFF6058at 120.359 kb on - strand, within GFF6058at 120.359 kb on - strand, within GFF6058at 120.395 kb on - strand, within GFF6058at 120.505 kb on - strand, within GFF6058at 120.607 kb on + strand, within GFF6058at 120.608 kb on - strand, within GFF6058at 120.608 kb on - strand, within GFF6058at 120.625 kb on + strand, within GFF6058at 120.625 kb on + strand, within GFF6058at 120.625 kb on + strand, within GFF6058at 120.625 kb on + strand, within GFF6058at 120.625 kb on + strand, within GFF6058at 120.626 kb on - strand, within GFF6058at 120.626 kb on - strand, within GFF6058at 120.626 kb on - strand, within GFF6058at 120.857 kb on + strand, within GFF6059at 120.858 kb on - strand, within GFF6059at 120.858 kb on - strand, within GFF6059at 120.868 kb on + strand, within GFF6059at 120.868 kb on + strand, within GFF6059at 120.869 kb on - strand, within GFF6059

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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117,942 + GFF6056 0.13 -1.0
117,942 + GFF6056 0.13 +0.1
117,942 + GFF6056 0.13 -0.9
117,942 + GFF6056 0.13 -0.5
117,943 - GFF6056 0.13 +0.2
117,943 - GFF6056 0.13 -0.4
117,943 - GFF6056 0.13 -0.2
117,943 - GFF6056 0.13 -0.4
117,943 - GFF6056 0.13 +0.5
117,943 - GFF6056 0.13 +0.3
117,943 - GFF6056 0.13 -0.4
118,105 - GFF6056 0.29 -0.9
118,233 + GFF6056 0.41 -0.9
118,233 + GFF6056 0.41 +1.4
118,233 + GFF6056 0.41 -0.6
118,233 + GFF6056 0.41 -0.2
118,233 + GFF6056 0.41 -0.1
118,234 - GFF6056 0.41 -0.2
118,234 - GFF6056 0.41 +0.3
118,234 - GFF6056 0.41 -1.9
118,234 - GFF6056 0.41 -1.8
118,234 - GFF6056 0.41 -2.0
118,245 + GFF6056 0.42 -0.7
118,245 + GFF6056 0.42 -0.4
118,245 + GFF6056 0.42 -0.3
118,245 + GFF6056 0.42 +0.5
118,245 + GFF6056 0.42 +0.4
118,246 - GFF6056 0.42 +0.2
118,246 - GFF6056 0.42 -0.8
118,246 - GFF6056 0.42 +0.7
118,246 - GFF6056 0.42 +1.8
118,827 + -0.2
118,827 + -0.3
118,828 - -1.2
118,828 - -2.4
118,828 - +0.8
118,828 - -0.2
118,828 - -0.7
118,967 - +1.2
119,119 + GFF6057 0.24 -0.5
119,119 + GFF6057 0.24 -0.1
119,120 - GFF6057 0.24 -0.4
119,120 - GFF6057 0.24 +0.8
119,120 - GFF6057 0.24 +0.8
119,173 + GFF6057 0.29 +0.0
119,173 + GFF6057 0.29 +0.8
119,174 - GFF6057 0.29 -0.4
119,174 - GFF6057 0.29 +1.1
119,332 + GFF6057 0.45 +0.3
119,332 + GFF6057 0.45 -0.3
119,332 + GFF6057 0.45 +0.7
119,333 - GFF6057 0.45 +1.8
119,333 - GFF6057 0.45 -0.3
119,333 - GFF6057 0.45 -2.1
119,381 - GFF6057 0.50 +1.1
119,449 + GFF6057 0.57 -0.3
119,449 + GFF6057 0.57 +0.2
119,500 + GFF6057 0.62 -0.7
119,500 + GFF6057 0.62 -0.8
119,500 + GFF6057 0.62 -0.1
119,501 - GFF6057 0.62 -1.3
119,501 - GFF6057 0.62 +0.8
119,569 + GFF6057 0.69 +0.7
119,569 + GFF6057 0.69 +0.2
119,569 + GFF6057 0.69 +0.4
119,569 + GFF6057 0.69 -0.3
119,570 - GFF6057 0.69 -0.4
119,629 + GFF6057 0.74 -1.4
119,629 + GFF6057 0.74 -0.4
119,630 - GFF6057 0.75 -0.4
119,731 + GFF6057 0.85 +0.9
119,731 + GFF6057 0.85 +1.0
119,732 - GFF6057 0.85 +0.6
119,732 - GFF6057 0.85 +0.3
119,824 + -1.0
119,866 + +0.5
119,866 + -0.5
119,867 - +0.6
120,050 - GFF6058 0.18 +1.1
120,050 - GFF6058 0.18 -0.6
120,050 - GFF6058 0.18 +0.6
120,076 + GFF6058 0.21 -0.4
120,160 + GFF6058 0.31 -1.0
120,160 + GFF6058 0.31 -1.4
120,161 - GFF6058 0.31 -0.2
120,161 - GFF6058 0.31 -0.3
120,161 - GFF6058 0.31 +0.5
120,332 - GFF6058 0.52 +0.4
120,358 + GFF6058 0.55 -0.3
120,359 - GFF6058 0.55 -0.8
120,359 - GFF6058 0.55 -1.5
120,359 - GFF6058 0.55 +1.5
120,395 - GFF6058 0.59 -0.8
120,505 - GFF6058 0.73 +2.2
120,607 + GFF6058 0.85 +0.4
120,608 - GFF6058 0.85 +0.4
120,608 - GFF6058 0.85 +0.2
120,625 + GFF6058 0.87 -0.2
120,625 + GFF6058 0.87 +0.0
120,625 + GFF6058 0.87 +0.3
120,625 + GFF6058 0.87 +0.4
120,625 + GFF6058 0.87 +0.1
120,626 - GFF6058 0.87 -1.0
120,626 - GFF6058 0.87 -1.2
120,626 - GFF6058 0.87 -0.6
120,857 + GFF6059 0.13 -0.3
120,858 - GFF6059 0.13 +0.5
120,858 - GFF6059 0.13 -0.4
120,868 + GFF6059 0.15 -0.4
120,868 + GFF6059 0.15 -0.8
120,869 - GFF6059 0.15 +0.3

Or see this region's nucleotide sequence