Strain Fitness in Variovorax sp. SCN45 around GFF6050

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
109,296	-		GFF6049	0.28	-0.5
109,355	+		GFF6049	0.33	-0.7
109,478	+		GFF6049	0.44	-1.0
109,478	+		GFF6049	0.44	+0.8
109,478	+		GFF6049	0.44	+0.3
109,478	+		GFF6049	0.44	-1.1
109,479	-		GFF6049	0.44	-0.2
109,479	-		GFF6049	0.44	-0.4
109,652	+		GFF6049	0.59	-0.7
109,733	+		GFF6049	0.67	-0.5
109,733	+		GFF6049	0.67	+0.5
109,733	+		GFF6049	0.67	+0.6
109,734	-		GFF6049	0.67	+0.5
109,734	-		GFF6049	0.67	-0.5
109,734	-		GFF6049	0.67	+0.2
109,734	-		GFF6049	0.67	-1.4
109,841	+		GFF6049	0.76	-0.2
109,841	+		GFF6049	0.76	-0.6
109,841	+		GFF6049	0.76	-0.3
109,841	+		GFF6049	0.76	-2.1
109,841	+		GFF6049	0.76	+0.3
109,841	+		GFF6049	0.76	-0.8
109,841	+		GFF6049	0.76	-0.2
109,841	+		GFF6049	0.76	-0.4
109,841	+		GFF6049	0.76	-0.5
109,841	+		GFF6049	0.76	+1.1
109,842	-		GFF6049	0.76	-0.0
109,842	-		GFF6049	0.76	-0.1
109,842	-		GFF6049	0.76	+0.5
109,842	-		GFF6049	0.76	-1.7
109,842	-		GFF6049	0.76	-0.6
109,844	+		GFF6049	0.77	+0.8
109,844	+		GFF6049	0.77	-0.7
109,844	+		GFF6049	0.77	+0.6
109,844	+		GFF6049	0.77	+0.2
109,845	-		GFF6049	0.77	+0.2
109,845	-		GFF6049	0.77	+0.6
109,907	+		GFF6049	0.82	-0.8
109,907	+		GFF6049	0.82	+1.2
109,908	-		GFF6049	0.82	-0.5
109,908	-		GFF6049	0.82	-0.0
109,908	-		GFF6049	0.82	-0.4
109,919	-		GFF6049	0.83	-0.2
109,919	-		GFF6049	0.83	-1.6
109,931	+		GFF6049	0.84	-0.9
109,931	+		GFF6049	0.84	+0.0
109,932	-		GFF6049	0.84	+1.8
109,932	-		GFF6049	0.84	-1.0
109,932	-		GFF6049	0.84	-1.3
109,932	-		GFF6049	0.84	-0.2
109,985	+		GFF6049	0.89	-0.3
109,985	+		GFF6049	0.89	-0.1
109,985	+		GFF6049	0.89	+0.4
109,985	+		GFF6049	0.89	+0.9
109,985	+		GFF6049	0.89	-0.3
109,985	+		GFF6049	0.89	+1.2
109,985	+		GFF6049	0.89	-1.0
109,986	-		GFF6049	0.89	-0.2
109,986	-		GFF6049	0.89	-0.4
110,000	+				+0.1
110,000	+				-1.1
110,000	+				+0.3
110,001	-				-1.1
110,159	+				+0.2
110,160	-				-0.3
110,160	-				-0.3
110,255	+				+1.3
110,255	+				+0.3
110,255	+				-0.1
110,255	+				+0.3
110,255	+				-0.9
110,255	+				+0.4
110,256	-				+0.2
110,256	-				-0.2
110,256	-				-0.9
110,333	-				-0.0
110,626	+		GFF6050	0.29	-0.1
110,626	+		GFF6050	0.29	+0.5
110,626	+		GFF6050	0.29	-0.2
110,626	+		GFF6050	0.29	-0.1
110,626	+		GFF6050	0.29	-0.6
110,626	+		GFF6050	0.29	-0.6
110,627	-		GFF6050	0.29	+0.4
110,627	-		GFF6050	0.29	-0.4
110,627	-		GFF6050	0.29	-0.2
110,627	-		GFF6050	0.29	+0.2
110,627	-		GFF6050	0.29	-0.4
110,627	-		GFF6050	0.29	-0.6
110,627	-		GFF6050	0.29	-0.8
110,845	+		GFF6050	0.45	+0.8
110,845	+		GFF6050	0.45	-0.9
110,845	+		GFF6050	0.45	-0.4
110,845	+		GFF6050	0.45	-0.3
110,845	+		GFF6050	0.45	+0.2
110,845	+		GFF6050	0.45	+0.2
110,845	+		GFF6050	0.45	+1.0
110,845	+		GFF6050	0.45	-0.7
110,846	-		GFF6050	0.45	-0.6
110,846	-		GFF6050	0.45	-0.9
110,846	-		GFF6050	0.45	-0.5
110,846	-		GFF6050	0.45	-0.1
110,846	-		GFF6050	0.45	-0.1
110,846	-		GFF6050	0.45	-0.1
111,146	+		GFF6050	0.67	-0.5
111,147	-		GFF6050	0.67	+0.1
111,229	+		GFF6050	0.73	-0.9
111,230	-		GFF6050	0.73	-0.6
111,257	-		GFF6050	0.75	-0.8
111,257	-		GFF6050	0.75	+0.8
111,257	-		GFF6050	0.75	-0.3
111,274	+		GFF6050	0.76	-0.7
111,274	+		GFF6050	0.76	-0.2
111,274	+		GFF6050	0.76	-1.9
111,274	+		GFF6050	0.76	-0.6
111,274	+		GFF6050	0.76	+0.1
111,274	+		GFF6050	0.76	-0.6
111,275	-		GFF6050	0.76	+0.4
111,275	-		GFF6050	0.76	-0.3
111,275	-		GFF6050	0.76	+0.1
111,275	-		GFF6050	0.76	-0.4
111,275	-		GFF6050	0.76	-0.3
111,275	-		GFF6050	0.76	-1.1
111,275	-		GFF6050	0.76	-0.2
111,386	-		GFF6050	0.84	-1.8
111,753	+		GFF6051	0.17	+0.1
111,753	+		GFF6051	0.17	-0.6
111,754	-		GFF6051	0.18	+0.5
111,754	-		GFF6051	0.18	-0.5
111,754	-		GFF6051	0.18	-0.3
111,754	-		GFF6051	0.18	-0.2
111,754	-		GFF6051	0.18	-0.7
111,858	-		GFF6051	0.31	-0.9
111,858	-		GFF6051	0.31	-0.0
111,860	+		GFF6051	0.31	-0.0
111,860	+		GFF6051	0.31	-0.2
111,860	+		GFF6051	0.31	-2.2
111,861	-		GFF6051	0.31	-0.1
111,861	-		GFF6051	0.31	-0.4
111,978	+		GFF6051	0.46	-0.4
111,978	+		GFF6051	0.46	-1.0
111,978	+		GFF6051	0.46	+0.1
111,979	-		GFF6051	0.46	-0.4
111,979	-		GFF6051	0.46	-0.0
111,979	-		GFF6051	0.46	-0.2
111,979	-		GFF6051	0.46	+0.2
112,266	-		GFF6051	0.82	-0.5
112,406	+				+0.5
112,406	+				-0.3
112,406	+				-0.2
112,406	+				+0.1
112,406	+				-1.7
112,406	+				-0.7
112,406	+				-0.1
112,407	-				-0.1
112,407	-				+0.6
112,407	-				-1.7
112,407	-				-0.3
112,407	-				-0.3
112,407	-				-0.7
112,407	-				-0.8
112,407	-				-0.3
112,407	-				+1.8
112,407	-				+0.8
112,407	-				-0.8
112,517	+		GFF6052	0.20	+0.9
112,517	+		GFF6052	0.20	-0.5
112,517	+		GFF6052	0.20	+0.3
112,517	+		GFF6052	0.20	-1.3
112,517	+		GFF6052	0.20	+2.1
112,517	+		GFF6052	0.20	-0.7
112,517	+		GFF6052	0.20	+1.1
112,517	+		GFF6052	0.20	+0.0
112,517	+		GFF6052	0.20	-0.7
112,517	+		GFF6052	0.20	-1.0
112,517	+		GFF6052	0.20	-0.4
112,517	+		GFF6052	0.20	-1.0
112,518	-		GFF6052	0.20	+0.2
112,518	-		GFF6052	0.20	-0.1
112,518	-		GFF6052	0.20	-0.0
112,518	-		GFF6052	0.20	+0.8
112,518	-		GFF6052	0.20	-0.8
112,518	-		GFF6052	0.20	-0.7
112,518	-		GFF6052	0.20	-0.1
112,526	+		GFF6052	0.22	-0.8
112,526	+		GFF6052	0.22	-0.4
112,526	+		GFF6052	0.22	-0.2
112,526	+		GFF6052	0.22	-0.2
112,527	-		GFF6052	0.22	-0.5
112,587	+		GFF6052	0.32	-0.0
112,587	+		GFF6052	0.32	+0.3
112,587	+		GFF6052	0.32	-0.4
112,587	+		GFF6052	0.32	-0.1
112,587	+		GFF6052	0.32	+1.8
112,588	-		GFF6052	0.33	-1.2
112,588	-		GFF6052	0.33	+0.8