Strain Fitness in Variovorax sp. SCN45 around GFF6029

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6028 and GFF6029 are separated by 28 nucleotidesGFF6029 and GFF6030 are separated by 0 nucleotidesGFF6030 and GFF6031 are separated by 1 nucleotides GFF6028 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like, at 88,590 to 89,654 GFF6028 GFF6029 - BUG/TctC family periplasmic protein, at 89,683 to 90,663 GFF6029 GFF6030 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 90,664 to 91,440 GFF6030 GFF6031 - Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1), at 91,442 to 92,221 GFF6031 Position (kb) 89 90 91Strain fitness (log2 ratio) -2 -1 0 1 2at 88.716 kb on + strand, within GFF6028at 89.022 kb on + strand, within GFF6028at 89.022 kb on + strand, within GFF6028at 89.023 kb on - strand, within GFF6028at 89.023 kb on - strand, within GFF6028at 89.023 kb on - strand, within GFF6028at 89.023 kb on - strand, within GFF6028at 89.061 kb on + strand, within GFF6028at 89.061 kb on + strand, within GFF6028at 89.062 kb on - strand, within GFF6028at 89.084 kb on + strand, within GFF6028at 89.084 kb on + strand, within GFF6028at 89.084 kb on + strand, within GFF6028at 89.338 kb on - strand, within GFF6028at 89.338 kb on - strand, within GFF6028at 89.338 kb on - strand, within GFF6028at 89.338 kb on - strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.383 kb on + strand, within GFF6028at 89.383 kb on + strand, within GFF6028at 89.384 kb on - strand, within GFF6028at 89.418 kb on + strand, within GFF6028at 89.418 kb on + strand, within GFF6028at 89.419 kb on - strand, within GFF6028at 89.529 kb on + strand, within GFF6028at 89.529 kb on + strand, within GFF6028at 89.529 kb on + strand, within GFF6028at 89.529 kb on + strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.574 kb on + strandat 89.575 kb on - strandat 89.575 kb on - strandat 89.575 kb on - strandat 89.575 kb on - strandat 89.665 kb on - strandat 89.665 kb on - strandat 89.665 kb on - strandat 89.668 kb on + strandat 89.668 kb on + strandat 89.669 kb on - strandat 89.669 kb on - strandat 89.669 kb on - strandat 89.669 kb on - strandat 89.794 kb on + strand, within GFF6029at 89.992 kb on + strand, within GFF6029at 89.992 kb on + strand, within GFF6029at 89.992 kb on + strand, within GFF6029at 89.992 kb on + strand, within GFF6029at 89.993 kb on - strand, within GFF6029at 89.993 kb on - strand, within GFF6029at 90.128 kb on - strand, within GFF6029at 90.157 kb on + strand, within GFF6029at 90.158 kb on - strand, within GFF6029at 90.158 kb on - strand, within GFF6029at 90.158 kb on - strand, within GFF6029at 90.244 kb on + strand, within GFF6029at 90.244 kb on + strand, within GFF6029at 90.245 kb on - strand, within GFF6029at 90.245 kb on - strand, within GFF6029at 90.269 kb on + strand, within GFF6029at 90.269 kb on + strand, within GFF6029at 90.269 kb on + strand, within GFF6029at 90.269 kb on + strand, within GFF6029at 90.270 kb on - strand, within GFF6029at 90.270 kb on - strand, within GFF6029at 90.622 kb on + strandat 90.622 kb on + strandat 90.622 kb on + strandat 90.622 kb on + strandat 90.677 kb on + strandat 90.755 kb on + strand, within GFF6030at 90.755 kb on + strand, within GFF6030at 90.756 kb on - strand, within GFF6030at 90.756 kb on - strand, within GFF6030at 90.756 kb on - strand, within GFF6030at 90.756 kb on - strand, within GFF6030at 91.064 kb on + strand, within GFF6030at 91.064 kb on + strand, within GFF6030at 91.064 kb on + strand, within GFF6030at 91.064 kb on + strand, within GFF6030at 91.065 kb on - strand, within GFF6030at 91.065 kb on - strand, within GFF6030at 91.065 kb on - strand, within GFF6030at 91.464 kb on + strandat 91.465 kb on - strandat 91.465 kb on - strandat 91.465 kb on - strandat 91.530 kb on + strand, within GFF6031at 91.530 kb on + strand, within GFF6031at 91.531 kb on - strand, within GFF6031at 91.531 kb on - strand, within GFF6031at 91.531 kb on - strand, within GFF6031at 91.531 kb on - strand, within GFF6031

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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88,716 + GFF6028 0.12 +0.5
89,022 + GFF6028 0.41 +0.1
89,022 + GFF6028 0.41 +1.0
89,023 - GFF6028 0.41 +0.2
89,023 - GFF6028 0.41 -0.2
89,023 - GFF6028 0.41 +1.2
89,023 - GFF6028 0.41 -0.2
89,061 + GFF6028 0.44 -0.8
89,061 + GFF6028 0.44 -0.8
89,062 - GFF6028 0.44 -1.2
89,084 + GFF6028 0.46 +0.3
89,084 + GFF6028 0.46 -0.2
89,084 + GFF6028 0.46 -0.1
89,338 - GFF6028 0.70 +0.1
89,338 - GFF6028 0.70 -1.3
89,338 - GFF6028 0.70 -1.0
89,338 - GFF6028 0.70 -0.1
89,367 + GFF6028 0.73 +0.9
89,367 + GFF6028 0.73 +0.1
89,367 + GFF6028 0.73 -1.4
89,367 + GFF6028 0.73 +1.8
89,367 + GFF6028 0.73 -1.7
89,367 + GFF6028 0.73 -1.3
89,367 + GFF6028 0.73 +0.2
89,367 + GFF6028 0.73 -0.4
89,367 + GFF6028 0.73 -0.8
89,367 + GFF6028 0.73 +2.2
89,367 + GFF6028 0.73 +0.2
89,367 + GFF6028 0.73 -1.2
89,367 + GFF6028 0.73 -0.2
89,367 + GFF6028 0.73 -0.1
89,368 - GFF6028 0.73 +1.2
89,368 - GFF6028 0.73 +0.9
89,368 - GFF6028 0.73 -0.3
89,368 - GFF6028 0.73 -0.0
89,368 - GFF6028 0.73 -0.2
89,368 - GFF6028 0.73 +0.2
89,368 - GFF6028 0.73 +1.4
89,368 - GFF6028 0.73 -0.5
89,368 - GFF6028 0.73 +0.2
89,383 + GFF6028 0.74 +1.0
89,383 + GFF6028 0.74 +0.7
89,384 - GFF6028 0.75 -0.1
89,418 + GFF6028 0.78 -0.4
89,418 + GFF6028 0.78 -0.7
89,419 - GFF6028 0.78 +0.4
89,529 + GFF6028 0.88 +0.1
89,529 + GFF6028 0.88 +0.1
89,529 + GFF6028 0.88 -0.4
89,529 + GFF6028 0.88 -1.5
89,530 - GFF6028 0.88 -0.2
89,530 - GFF6028 0.88 -0.2
89,530 - GFF6028 0.88 -0.6
89,530 - GFF6028 0.88 -1.9
89,530 - GFF6028 0.88 -0.0
89,530 - GFF6028 0.88 -0.8
89,530 - GFF6028 0.88 +0.8
89,530 - GFF6028 0.88 -0.9
89,530 - GFF6028 0.88 +1.3
89,574 + +0.4
89,575 - +1.2
89,575 - -0.1
89,575 - -0.5
89,575 - +0.8
89,665 - +0.6
89,665 - +0.1
89,665 - -0.2
89,668 + +1.7
89,668 + +0.2
89,669 - -1.1
89,669 - -0.4
89,669 - -0.4
89,669 - -1.0
89,794 + GFF6029 0.11 -0.7
89,992 + GFF6029 0.31 -0.3
89,992 + GFF6029 0.31 +0.5
89,992 + GFF6029 0.31 -0.2
89,992 + GFF6029 0.31 +0.5
89,993 - GFF6029 0.32 +0.1
89,993 - GFF6029 0.32 -0.5
90,128 - GFF6029 0.45 -2.0
90,157 + GFF6029 0.48 -0.1
90,158 - GFF6029 0.48 -2.5
90,158 - GFF6029 0.48 +0.7
90,158 - GFF6029 0.48 +0.3
90,244 + GFF6029 0.57 -1.4
90,244 + GFF6029 0.57 -0.3
90,245 - GFF6029 0.57 -1.4
90,245 - GFF6029 0.57 +0.2
90,269 + GFF6029 0.60 +0.2
90,269 + GFF6029 0.60 -0.4
90,269 + GFF6029 0.60 -0.9
90,269 + GFF6029 0.60 -0.3
90,270 - GFF6029 0.60 -0.5
90,270 - GFF6029 0.60 -0.5
90,622 + -0.0
90,622 + +0.3
90,622 + +0.0
90,622 + -0.7
90,677 + -0.2
90,755 + GFF6030 0.12 -0.2
90,755 + GFF6030 0.12 -0.2
90,756 - GFF6030 0.12 +0.8
90,756 - GFF6030 0.12 -0.5
90,756 - GFF6030 0.12 -1.2
90,756 - GFF6030 0.12 +1.1
91,064 + GFF6030 0.51 -0.5
91,064 + GFF6030 0.51 -1.2
91,064 + GFF6030 0.51 +0.2
91,064 + GFF6030 0.51 +0.1
91,065 - GFF6030 0.52 -0.8
91,065 - GFF6030 0.52 +1.5
91,065 - GFF6030 0.52 +0.1
91,464 + -1.0
91,465 - -1.0
91,465 - -0.5
91,465 - +0.3
91,530 + GFF6031 0.11 -0.1
91,530 + GFF6031 0.11 +0.2
91,531 - GFF6031 0.11 -0.3
91,531 - GFF6031 0.11 +1.1
91,531 - GFF6031 0.11 +0.7
91,531 - GFF6031 0.11 -1.4

Or see this region's nucleotide sequence