Strain Fitness in Variovorax sp. SCN45 around GFF6001

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5999 and GFF6000 are separated by 11 nucleotidesGFF6000 and GFF6001 are separated by 10 nucleotidesGFF6001 and GFF6002 are separated by 105 nucleotides GFF5999 - DNA polymerase IV (EC 2.7.7.7), at 57,501 to 58,688 GFF5999 GFF6000 - hypothetical protein, at 58,700 to 59,389 GFF6000 GFF6001 - Purine nucleoside permease, at 59,400 to 60,455 GFF6001 GFF6002 - DNA topoisomerase IB (poxvirus type) (EC 5.99.1.2), at 60,561 to 61,811 GFF6002 Position (kb) 59 60 61Strain fitness (log2 ratio) -2 -1 0 1 2at 58.416 kb on + strand, within GFF5999at 58.416 kb on + strand, within GFF5999at 58.417 kb on - strand, within GFF5999at 58.417 kb on - strand, within GFF5999at 58.417 kb on - strand, within GFF5999at 58.417 kb on - strand, within GFF5999at 58.417 kb on - strand, within GFF5999at 58.417 kb on - strand, within GFF5999at 58.417 kb on - strand, within GFF5999at 58.450 kb on - strand, within GFF5999at 58.450 kb on - strand, within GFF5999at 58.450 kb on - strand, within GFF5999at 58.767 kb on - strandat 58.767 kb on - strandat 58.767 kb on - strandat 58.767 kb on - strandat 58.767 kb on - strandat 58.858 kb on - strand, within GFF6000at 58.883 kb on + strand, within GFF6000at 58.883 kb on + strand, within GFF6000at 58.884 kb on - strand, within GFF6000at 58.884 kb on - strand, within GFF6000at 58.884 kb on - strand, within GFF6000at 58.884 kb on - strand, within GFF6000at 58.927 kb on - strand, within GFF6000at 58.927 kb on - strand, within GFF6000at 58.927 kb on - strand, within GFF6000at 59.004 kb on - strand, within GFF6000at 59.093 kb on + strand, within GFF6000at 59.094 kb on - strand, within GFF6000at 59.094 kb on - strand, within GFF6000at 59.094 kb on - strand, within GFF6000at 59.094 kb on - strand, within GFF6000at 59.153 kb on + strand, within GFF6000at 59.247 kb on - strand, within GFF6000at 59.247 kb on - strand, within GFF6000at 59.247 kb on - strand, within GFF6000at 59.247 kb on - strand, within GFF6000at 59.247 kb on - strand, within GFF6000at 59.264 kb on + strand, within GFF6000at 59.264 kb on - strand, within GFF6000at 59.296 kb on - strand, within GFF6000at 59.371 kb on - strandat 59.371 kb on - strandat 59.371 kb on - strandat 59.371 kb on - strandat 59.371 kb on - strandat 59.371 kb on - strandat 59.668 kb on + strand, within GFF6001at 59.668 kb on + strand, within GFF6001at 59.668 kb on + strand, within GFF6001at 59.669 kb on - strand, within GFF6001at 59.683 kb on + strand, within GFF6001at 59.684 kb on - strand, within GFF6001at 59.698 kb on + strand, within GFF6001at 59.698 kb on + strand, within GFF6001at 59.698 kb on + strand, within GFF6001at 59.698 kb on + strand, within GFF6001at 59.698 kb on + strand, within GFF6001at 59.698 kb on + strand, within GFF6001at 59.699 kb on - strand, within GFF6001at 59.699 kb on - strand, within GFF6001at 59.699 kb on - strand, within GFF6001at 59.699 kb on - strand, within GFF6001at 59.750 kb on + strand, within GFF6001at 59.751 kb on - strand, within GFF6001at 59.751 kb on - strand, within GFF6001at 59.751 kb on - strand, within GFF6001at 59.751 kb on - strand, within GFF6001at 59.915 kb on - strand, within GFF6001at 59.987 kb on - strand, within GFF6001at 59.987 kb on - strand, within GFF6001at 60.067 kb on + strand, within GFF6001at 60.067 kb on + strand, within GFF6001at 60.067 kb on + strand, within GFF6001at 60.068 kb on - strand, within GFF6001at 60.068 kb on - strand, within GFF6001at 60.068 kb on - strand, within GFF6001at 60.068 kb on - strand, within GFF6001at 60.070 kb on + strand, within GFF6001at 60.070 kb on + strand, within GFF6001at 60.070 kb on + strand, within GFF6001at 60.070 kb on + strand, within GFF6001at 60.070 kb on + strand, within GFF6001at 60.071 kb on - strand, within GFF6001at 60.071 kb on - strand, within GFF6001at 60.071 kb on - strand, within GFF6001at 60.071 kb on - strand, within GFF6001at 60.071 kb on - strand, within GFF6001at 60.181 kb on + strand, within GFF6001at 60.182 kb on - strand, within GFF6001at 60.182 kb on - strand, within GFF6001at 60.182 kb on - strand, within GFF6001at 60.182 kb on - strand, within GFF6001at 60.233 kb on - strand, within GFF6001at 60.242 kb on - strand, within GFF6001at 60.505 kb on + strandat 60.506 kb on - strandat 60.506 kb on - strandat 60.543 kb on + strandat 60.544 kb on - strandat 60.544 kb on - strandat 60.654 kb on + strandat 60.654 kb on + strandat 60.654 kb on + strandat 60.790 kb on - strand, within GFF6002at 60.790 kb on - strand, within GFF6002at 60.790 kb on - strand, within GFF6002at 60.790 kb on - strand, within GFF6002at 60.790 kb on - strand, within GFF6002at 60.874 kb on - strand, within GFF6002at 61.110 kb on + strand, within GFF6002at 61.279 kb on - strand, within GFF6002at 61.332 kb on + strand, within GFF6002at 61.332 kb on + strand, within GFF6002

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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58,416 + GFF5999 0.77 +1.8
58,416 + GFF5999 0.77 -0.3
58,417 - GFF5999 0.77 -1.3
58,417 - GFF5999 0.77 +0.8
58,417 - GFF5999 0.77 +1.0
58,417 - GFF5999 0.77 -1.7
58,417 - GFF5999 0.77 -0.4
58,417 - GFF5999 0.77 +1.3
58,417 - GFF5999 0.77 +0.2
58,450 - GFF5999 0.80 -0.2
58,450 - GFF5999 0.80 -0.8
58,450 - GFF5999 0.80 +0.8
58,767 - -0.9
58,767 - +0.1
58,767 - +0.6
58,767 - +0.4
58,767 - -0.4
58,858 - GFF6000 0.23 -0.4
58,883 + GFF6000 0.27 +0.6
58,883 + GFF6000 0.27 +0.4
58,884 - GFF6000 0.27 -0.5
58,884 - GFF6000 0.27 -0.6
58,884 - GFF6000 0.27 -0.4
58,884 - GFF6000 0.27 -0.8
58,927 - GFF6000 0.33 -0.2
58,927 - GFF6000 0.33 -0.6
58,927 - GFF6000 0.33 -0.6
59,004 - GFF6000 0.44 -0.4
59,093 + GFF6000 0.57 -0.9
59,094 - GFF6000 0.57 -0.7
59,094 - GFF6000 0.57 +0.9
59,094 - GFF6000 0.57 +0.1
59,094 - GFF6000 0.57 +0.5
59,153 + GFF6000 0.66 -0.8
59,247 - GFF6000 0.79 +0.3
59,247 - GFF6000 0.79 +1.0
59,247 - GFF6000 0.79 -0.2
59,247 - GFF6000 0.79 -0.4
59,247 - GFF6000 0.79 -0.2
59,264 + GFF6000 0.82 -0.7
59,264 - GFF6000 0.82 -0.4
59,296 - GFF6000 0.86 -1.5
59,371 - -1.4
59,371 - -0.2
59,371 - -0.2
59,371 - +0.5
59,371 - -0.4
59,371 - -1.1
59,668 + GFF6001 0.25 -0.4
59,668 + GFF6001 0.25 -0.4
59,668 + GFF6001 0.25 +0.5
59,669 - GFF6001 0.25 +0.2
59,683 + GFF6001 0.27 +0.5
59,684 - GFF6001 0.27 +1.3
59,698 + GFF6001 0.28 -0.4
59,698 + GFF6001 0.28 +0.0
59,698 + GFF6001 0.28 +2.2
59,698 + GFF6001 0.28 +1.4
59,698 + GFF6001 0.28 -0.3
59,698 + GFF6001 0.28 -0.5
59,699 - GFF6001 0.28 +2.0
59,699 - GFF6001 0.28 -2.0
59,699 - GFF6001 0.28 -0.1
59,699 - GFF6001 0.28 +0.2
59,750 + GFF6001 0.33 -0.5
59,751 - GFF6001 0.33 +0.1
59,751 - GFF6001 0.33 -0.6
59,751 - GFF6001 0.33 -0.0
59,751 - GFF6001 0.33 -0.0
59,915 - GFF6001 0.49 -0.3
59,987 - GFF6001 0.56 -0.1
59,987 - GFF6001 0.56 -1.5
60,067 + GFF6001 0.63 +0.8
60,067 + GFF6001 0.63 -0.1
60,067 + GFF6001 0.63 -0.6
60,068 - GFF6001 0.63 -0.2
60,068 - GFF6001 0.63 -1.3
60,068 - GFF6001 0.63 +0.4
60,068 - GFF6001 0.63 +0.1
60,070 + GFF6001 0.63 -0.3
60,070 + GFF6001 0.63 -1.1
60,070 + GFF6001 0.63 +0.7
60,070 + GFF6001 0.63 +0.2
60,070 + GFF6001 0.63 -0.1
60,071 - GFF6001 0.64 +0.6
60,071 - GFF6001 0.64 -0.1
60,071 - GFF6001 0.64 +0.3
60,071 - GFF6001 0.64 +0.4
60,071 - GFF6001 0.64 +0.8
60,181 + GFF6001 0.74 +0.8
60,182 - GFF6001 0.74 -0.2
60,182 - GFF6001 0.74 +0.8
60,182 - GFF6001 0.74 -0.3
60,182 - GFF6001 0.74 +0.3
60,233 - GFF6001 0.79 +0.1
60,242 - GFF6001 0.80 +0.5
60,505 + -0.2
60,506 - +0.2
60,506 - +0.7
60,543 + -0.8
60,544 - -0.5
60,544 - -0.9
60,654 + -0.3
60,654 + -1.0
60,654 + -0.4
60,790 - GFF6002 0.18 -0.6
60,790 - GFF6002 0.18 -0.1
60,790 - GFF6002 0.18 -0.3
60,790 - GFF6002 0.18 -0.2
60,790 - GFF6002 0.18 -0.3
60,874 - GFF6002 0.25 +1.6
61,110 + GFF6002 0.44 +0.2
61,279 - GFF6002 0.57 +0.1
61,332 + GFF6002 0.62 +1.0
61,332 + GFF6002 0.62 +1.8

Or see this region's nucleotide sequence