Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5996 and GFF5997 are separated by 19 nucleotides GFF5997 and GFF5998 are separated by 103 nucleotides GFF5998 and GFF5999 are separated by 106 nucleotides
GFF5996 - BUG/TctC family periplasmic protein, at 55,080 to 56,075
GFF5996
GFF5997 - hypothetical protein, at 56,095 to 56,664
GFF5997
GFF5998 - Uncharacterized protein YiiX, at 56,768 to 57,394
GFF5998
GFF5999 - DNA polymerase IV (EC 2.7.7.7), at 57,501 to 58,688
GFF5999
Position (kb) 56
57 Strain fitness (log2 ratio) -2
-1
0
1 at 55.212 kb on + strand, within GFF5996 at 55.212 kb on + strand, within GFF5996 at 55.212 kb on + strand, within GFF5996 at 55.213 kb on - strand, within GFF5996 at 55.213 kb on - strand, within GFF5996 at 55.213 kb on - strand, within GFF5996 at 55.213 kb on - strand, within GFF5996 at 55.426 kb on - strand, within GFF5996 at 55.737 kb on + strand, within GFF5996 at 55.737 kb on + strand, within GFF5996 at 55.737 kb on + strand, within GFF5996 at 55.738 kb on - strand, within GFF5996 at 55.968 kb on + strand, within GFF5996 at 55.968 kb on + strand, within GFF5996 at 55.968 kb on + strand, within GFF5996 at 55.968 kb on + strand, within GFF5996 at 55.969 kb on - strand, within GFF5996 at 55.969 kb on - strand, within GFF5996 at 55.969 kb on - strand, within GFF5996 at 56.085 kb on + strand at 56.086 kb on - strand at 56.086 kb on - strand at 56.166 kb on - strand, within GFF5997 at 56.186 kb on + strand, within GFF5997 at 56.186 kb on + strand, within GFF5997 at 56.187 kb on - strand, within GFF5997 at 56.192 kb on + strand, within GFF5997 at 56.192 kb on + strand, within GFF5997 at 56.192 kb on + strand, within GFF5997 at 56.192 kb on + strand, within GFF5997 at 56.192 kb on + strand, within GFF5997 at 56.193 kb on - strand, within GFF5997 at 56.216 kb on + strand, within GFF5997 at 56.216 kb on + strand, within GFF5997 at 56.217 kb on - strand, within GFF5997 at 56.511 kb on - strand, within GFF5997 at 56.511 kb on - strand, within GFF5997 at 56.511 kb on - strand, within GFF5997 at 56.934 kb on - strand, within GFF5998 at 57.006 kb on - strand, within GFF5998 at 57.050 kb on + strand, within GFF5998 at 57.051 kb on - strand, within GFF5998 at 57.051 kb on - strand, within GFF5998 at 57.146 kb on + strand, within GFF5998 at 57.182 kb on + strand, within GFF5998 at 57.182 kb on + strand, within GFF5998 at 57.182 kb on + strand, within GFF5998 at 57.183 kb on - strand, within GFF5998 at 57.513 kb on + strand at 57.513 kb on + strand at 57.514 kb on - strand at 57.514 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 55,212 + GFF5996 0.13 +0.1 55,212 + GFF5996 0.13 -0.8 55,212 + GFF5996 0.13 +0.0 55,213 - GFF5996 0.13 -0.0 55,213 - GFF5996 0.13 +0.2 55,213 - GFF5996 0.13 -0.4 55,213 - GFF5996 0.13 -1.1 55,426 - GFF5996 0.35 +0.1 55,737 + GFF5996 0.66 +1.5 55,737 + GFF5996 0.66 -0.8 55,737 + GFF5996 0.66 -1.2 55,738 - GFF5996 0.66 +0.2 55,968 + GFF5996 0.89 +0.2 55,968 + GFF5996 0.89 -1.1 55,968 + GFF5996 0.89 -0.5 55,968 + GFF5996 0.89 -1.8 55,969 - GFF5996 0.89 +0.8 55,969 - GFF5996 0.89 -1.0 55,969 - GFF5996 0.89 +1.2 56,085 + -0.6 56,086 - +0.1 56,086 - -0.4 56,166 - GFF5997 0.12 -1.2 56,186 + GFF5997 0.16 +0.8 56,186 + GFF5997 0.16 +0.5 56,187 - GFF5997 0.16 +0.8 56,192 + GFF5997 0.17 +0.7 56,192 + GFF5997 0.17 +0.2 56,192 + GFF5997 0.17 +0.1 56,192 + GFF5997 0.17 -0.2 56,192 + GFF5997 0.17 -0.8 56,193 - GFF5997 0.17 -0.7 56,216 + GFF5997 0.21 +0.1 56,216 + GFF5997 0.21 +0.4 56,217 - GFF5997 0.21 +1.0 56,511 - GFF5997 0.73 -2.2 56,511 - GFF5997 0.73 +0.7 56,511 - GFF5997 0.73 +0.5 56,934 - GFF5998 0.26 +0.3 57,006 - GFF5998 0.38 +1.5 57,050 + GFF5998 0.45 -0.5 57,051 - GFF5998 0.45 -0.4 57,051 - GFF5998 0.45 -0.0 57,146 + GFF5998 0.60 -0.3 57,182 + GFF5998 0.66 -2.6 57,182 + GFF5998 0.66 -0.4 57,182 + GFF5998 0.66 +0.5 57,183 - GFF5998 0.66 -0.2 57,513 + -0.5 57,513 + -0.2 57,514 - -0.8 57,514 - -0.0
Or see this region's nucleotide sequence