Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5981 and GFF5982 are separated by 91 nucleotides GFF5982 and GFF5983 are separated by 65 nucleotides GFF5983 and GFF5984 are separated by 125 nucleotides
GFF5981 - COGs COG3558, at 35,300 to 35,713
GFF5981
GFF5982 - Transcriptional regulator, AcrR family, at 35,805 to 36,395
GFF5982
GFF5983 - Transcriptional regulator, LysR family, at 36,461 to 37,348
GFF5983
GFF5984 - L-lactate dehydrogenase, at 37,474 to 38,631
GFF5984
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1 at 35.601 kb on + strand, within GFF5981 at 35.602 kb on - strand, within GFF5981 at 35.713 kb on + strand at 35.793 kb on + strand at 35.794 kb on - strand at 35.865 kb on + strand, within GFF5982 at 35.865 kb on + strand, within GFF5982 at 35.866 kb on - strand, within GFF5982 at 35.866 kb on - strand, within GFF5982 at 35.866 kb on - strand, within GFF5982 at 35.866 kb on - strand, within GFF5982 at 36.427 kb on - strand at 36.812 kb on + strand, within GFF5983 at 36.813 kb on - strand, within GFF5983 at 36.813 kb on - strand, within GFF5983 at 36.971 kb on + strand, within GFF5983 at 36.972 kb on - strand, within GFF5983 at 37.421 kb on + strand at 37.421 kb on + strand at 37.422 kb on - strand at 37.422 kb on - strand at 37.549 kb on + strand at 37.549 kb on + strand at 37.550 kb on - strand at 37.873 kb on + strand, within GFF5984 at 37.873 kb on + strand, within GFF5984 at 37.873 kb on + strand, within GFF5984 at 37.873 kb on + strand, within GFF5984 at 37.873 kb on + strand, within GFF5984 at 37.873 kb on + strand, within GFF5984 at 37.874 kb on - strand, within GFF5984 at 37.874 kb on - strand, within GFF5984 at 37.874 kb on - strand, within GFF5984
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 35,601 + GFF5981 0.73 +0.2 35,602 - GFF5981 0.73 +1.2 35,713 + -0.4 35,793 + -1.7 35,794 - -0.1 35,865 + GFF5982 0.10 +0.9 35,865 + GFF5982 0.10 -0.4 35,866 - GFF5982 0.10 -0.5 35,866 - GFF5982 0.10 -0.8 35,866 - GFF5982 0.10 +0.3 35,866 - GFF5982 0.10 -0.2 36,427 - -0.7 36,812 + GFF5983 0.40 -0.1 36,813 - GFF5983 0.40 +1.0 36,813 - GFF5983 0.40 +1.3 36,971 + GFF5983 0.57 +0.0 36,972 - GFF5983 0.58 +0.8 37,421 + +0.5 37,421 + -0.4 37,422 - -0.2 37,422 - -0.8 37,549 + +1.1 37,549 + +0.5 37,550 - -0.4 37,873 + GFF5984 0.34 -0.3 37,873 + GFF5984 0.34 -2.3 37,873 + GFF5984 0.34 -0.1 37,873 + GFF5984 0.34 -0.9 37,873 + GFF5984 0.34 -0.8 37,873 + GFF5984 0.34 +0.1 37,874 - GFF5984 0.35 +0.0 37,874 - GFF5984 0.35 -0.0 37,874 - GFF5984 0.35 +0.4
Or see this region's nucleotide sequence