Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5937 and GFF5938 overlap by 4 nucleotides GFF5938 and GFF5939 are separated by 8 nucleotides GFF5939 and GFF5940 overlap by 8 nucleotides
GFF5937 - T6SS component TssG (ImpH/VasB), at 157,198 to 158,223
GFF5937
GFF5938 - T6SS component TssF (ImpG/VasA), at 158,220 to 160,112
GFF5938
GFF5939 - T6SS lysozyme-like component TssE, at 160,121 to 160,636
GFF5939
GFF5940 - T6SS associated component TagJ (ImpE), at 160,629 to 161,453
GFF5940
Position (kb) 158
159
160
161 Strain fitness (log2 ratio) -1
0
1
2 at 157.631 kb on + strand, within GFF5937 at 157.841 kb on + strand, within GFF5937 at 157.842 kb on - strand, within GFF5937 at 158.527 kb on + strand, within GFF5938 at 158.593 kb on + strand, within GFF5938 at 158.593 kb on + strand, within GFF5938 at 158.594 kb on - strand, within GFF5938 at 158.594 kb on - strand, within GFF5938 at 158.840 kb on - strand, within GFF5938 at 158.926 kb on + strand, within GFF5938 at 159.316 kb on + strand, within GFF5938 at 159.316 kb on + strand, within GFF5938 at 159.317 kb on - strand, within GFF5938 at 159.598 kb on - strand, within GFF5938 at 159.662 kb on - strand, within GFF5938 at 159.662 kb on - strand, within GFF5938 at 159.671 kb on - strand, within GFF5938 at 160.122 kb on + strand at 160.122 kb on + strand at 160.122 kb on + strand at 160.122 kb on + strand at 160.123 kb on - strand at 160.123 kb on - strand at 160.175 kb on + strand, within GFF5939 at 160.399 kb on + strand, within GFF5939 at 160.410 kb on + strand, within GFF5939 at 160.957 kb on + strand, within GFF5940 at 160.958 kb on - strand, within GFF5940 at 160.960 kb on + strand, within GFF5940 at 160.960 kb on + strand, within GFF5940 at 160.960 kb on + strand, within GFF5940 at 160.961 kb on - strand, within GFF5940
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 157,631 + GFF5937 0.42 -0.6 157,841 + GFF5937 0.63 +0.5 157,842 - GFF5937 0.63 -0.4 158,527 + GFF5938 0.16 +0.4 158,593 + GFF5938 0.20 -0.1 158,593 + GFF5938 0.20 -1.6 158,594 - GFF5938 0.20 -0.4 158,594 - GFF5938 0.20 +1.0 158,840 - GFF5938 0.33 +0.2 158,926 + GFF5938 0.37 +1.8 159,316 + GFF5938 0.58 +0.1 159,316 + GFF5938 0.58 +0.5 159,317 - GFF5938 0.58 +0.5 159,598 - GFF5938 0.73 +0.1 159,662 - GFF5938 0.76 -0.7 159,662 - GFF5938 0.76 -0.3 159,671 - GFF5938 0.77 +0.5 160,122 + -0.3 160,122 + +0.3 160,122 + +0.6 160,122 + -0.7 160,123 - -0.2 160,123 - -0.2 160,175 + GFF5939 0.10 -0.8 160,399 + GFF5939 0.54 +1.2 160,410 + GFF5939 0.56 -0.6 160,957 + GFF5940 0.40 +0.0 160,958 - GFF5940 0.40 -0.3 160,960 + GFF5940 0.40 -0.2 160,960 + GFF5940 0.40 -1.2 160,960 + GFF5940 0.40 -0.3 160,961 - GFF5940 0.40 -1.1
Or see this region's nucleotide sequence